Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0017368

Physical Location & Seq

Genomic Coordinates Reverse (-)

22084847 .. 22087142

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g30240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGACTCTTCTCTCTGATAAGCTTGTTCATCTCATTCAAACCTTGTCTTCCATTGCATTTTCTCTTAAGCAGAAGCTCATGAACCCAACCTTGTTGCTTGGTGCCAAGCTATGGGTTTTGATTGTGACCTTGATTGTTCTATTCACCCTTCTGGTGATTGTCATTGTCTTGGTGATCTACATCATCAAGTACCTGCGAGGCCGAAAATCCTACGACACTGATTTGTGTGTACAAACTCCCATTGCTTCTAAAGTCCCTCACAATCCCTATGGCCACTCATCCCTCAATCGGAGGCTACTTTCGCTTAACATGTCCGAAATTGAGATGAACATTGGGAAGGAGAGGCATACTGTGTTCTCTGATCAGCTGTCCTGTACTGGTGCCAGTGGGATGACCCCAACTAGTGCTAAGGTGAATGTATTGCAATCTAGGTACATTCCAGTGGTTAAAGATGTGTGGAGAGGTGACAAGTTTACTTTAAGGGAACTTGAGGCAGCAACAAATGGGTTTGGTAAAGATAATCTGATTGGCAATGGAGACTATGGCATTGTTTATCATGGCGTTCTGTTTAATAATACTCGAGTTGCAGTGAAGAGGCTTGTGAGTGACAGTTGCCATGAGGATGATTTCATAGCAGAAATGGAGGCTATTGGGCATGTGAGGCACAAAAATCTTGTCAAACTGCTCGGATACAGAATCGAAAGAGCTTACAGATTGCTTGTGAATGAGTATGTAGATAACAAAAGTCTGCACTATTGGCTTCATGAATGTCCACTAAATGTCAGCCCTCTAACATGGGACATCCGGATGAAAATAATCCAAGGAATAGCAAAAGGATTGGCCTACCTTCATGAGGATATTGAACCAAACATTTTCCATATGACCCTAATATCTAGCAATGTACTGCTTGATCAACAGTGGGAACCTAAGCTTTCTGATTTTGGCCTTGCTAAGCTATACAGTCCGGCGTGGGGAATCACTATAATGGAATCGTTAGGTTATGTTGCCCCAGAATATTTTGCCACTGGTGATTTTGATGAGAAGTCGGATGTTTATAGCTTCGGAATACTTCTTATGGAGATAATTTGTGGCAGGAGTCCTATTGATCGTACTCAATGCCAACCATATCTGATAGACTGGTTAAAGTCCATGGTTGCTAGTCAAACAACTGCTTATGTAGTTGATCCTAAATTGCCAGAGAAGCCATATTCAAAAGAACTCAAAAGGCTTCTTCTGGTTGCTCTTCGTTGCGTTGATCCTGATTTAGAAGTTAGGCCGAGAATGGGAGAAGTTCTTCACATGCTTGAGCATGCTCGAACCCCTGGACTTGCTAATGGACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

448

Amino Acids

50.66

Weight (kDa)

7.65

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	173 - 432	5.1e-37	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	174 - 434	1e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30240
malus_domestica	MD01G1208500.v1.1
prunus_persica	Prupe.2G301100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378371
rosa_laevigata	RLG00000026440
rosa_multiflora	Rmu_sc0013545.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280500
rosa_rugosa	Rorug01G0408300
rosa_samantha	Rh1AG429800 Rh1BG387500 Rh1CG401000 Rh1DG418600
rosa_wichuraiana	Rw1G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AccB1I	GGYRCC	2 cut(s)	101, 380
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	804
AclWI	GGATC	2 cut(s)	1178, 1250
AcoI	YGGCCR	1 cut(s)	271
AfaI	GTAC	6 cut(s)	191, 231, 376, 434, 903, 1111
AfiI	CCNNNNNNNGG	5 cut(s)	111, 288, 853, 971, 1283
AflII	CTTAAG	1 cut(s)	65
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	3 cut(s)	38, 863, 1212
AhlI	ACTAGT	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	1321
AluBI	AGCT	8 cut(s)	22, 76, 109, 367, 707, 931, 955, 1059
AluI	AGCT	8 cut(s)	22, 76, 109, 367, 707, 931, 955, 1059
Alw26I	GTCTC	1 cut(s)	531
AlwI	GGATC	2 cut(s)	1178, 1250
Ama87I	CYCGRG	1 cut(s)	579
Aor13HI	TCCGGA	1 cut(s)	804
AoxI	GGCC	5 cut(s)	199, 271, 840, 943, 1274
ApeKI	GCWGC	1 cut(s)	494
ArsI	GACNNNNNNTTYG	2 cut(s)	660, 692
Asp700I	GAANNNNTTC	1 cut(s)	1293
AsuHPI	GGTGA	6 cut(s)	136, 166, 184, 424, 476, 1040
AvaI	CYCGRG	1 cut(s)	579
BalI	TGGCCA	1 cut(s)	273
BanI	GGYRCC	2 cut(s)	101, 380
BbsI	GAAGAC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	506
BciT130I	CCWGG	1 cut(s)	1323
BciVI	GTATCC	1 cut(s)	683
BclI	TGATCA	2 cut(s)	361, 910
BcoDI	GTCTC	1 cut(s)	531
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	4 cut(s)	402, 429, 894, 1158
BfrI	CTTAAG	1 cut(s)	65
BfuAI	ACCTGC	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	683
BisI	GCNGC	1 cut(s)	495
BlpI	GCTNAGC	1 cut(s)	951
BlsI	GCNGC	1 cut(s)	496
Bme1390I	CCNGG	1 cut(s)	1323
BmeT110I	CYCGRG	1 cut(s)	579
BmiI	GGNNCC	3 cut(s)	103, 382, 924
BmrFI	CCNGG	1 cut(s)	1323
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	408, 927
Bpu1102I	GCTNAGC	1 cut(s)	951
BpuEI	CTTGAG	2 cut(s)	509, 1325
BsaBI	GATNNNNATC	1 cut(s)	179
BsaJI	CCNNGG	3 cut(s)	820, 1149, 1321
BsaWI	WCCGGW	1 cut(s)	804
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 288, 853, 971, 1283
Bse1I	ACTGG	5 cut(s)	382, 384, 440, 1030, 1142
Bse3DI	GCAATG	4 cut(s)	51, 240, 538, 904
Bse8I	GATNNNNATC	1 cut(s)	179
BseAI	TCCGGA	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	1323
BseDI	CCNNGG	3 cut(s)	820, 1149, 1321
BseGI	GGATG	6 cut(s)	278, 396, 628, 801, 813, 1054
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	5 cut(s)	111, 288, 853, 971, 1283
BseMI	GCAATG	4 cut(s)	51, 240, 538, 904
BseNI	ACTGG	5 cut(s)	382, 384, 440, 1030, 1142
BseXI	GCAGC	1 cut(s)	506
BsgI	GTGCAG	1 cut(s)	734
BshFI	GGCC	5 cut(s)	201, 273, 842, 945, 1276
BshNI	GGYRCC	2 cut(s)	101, 380
BsiHKCI	CYCGRG	1 cut(s)	579
BsiSI	CCGG	2 cut(s)	805, 965
BslFI	GGGAC	2 cut(s)	239, 812
BslI	CCNNNNNNNGG	5 cut(s)	111, 288, 853, 971, 1283
BsmAI	GTCTC	1 cut(s)	531
BsmFI	GGGAC	2 cut(s)	239, 812
BsnI	GGCC	5 cut(s)	201, 273, 842, 945, 1276
BsoBI	CYCGRG	1 cut(s)	579
Bsp13I	TCCGGA	1 cut(s)	804
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	6 cut(s)	174, 361, 910, 1105, 1183, 1255
Bsp1720I	GCTNAGC	1 cut(s)	951
Bsp19I	CCATGG	1 cut(s)	1149
BspANI	GGCC	5 cut(s)	201, 273, 842, 945, 1276
BspEI	TCCGGA	1 cut(s)	804
BspHI	TCATGA	3 cut(s)	78, 763, 850
BspLI	GGNNCC	3 cut(s)	103, 382, 924
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	1178, 1250
BspQI	GCTCTTC	1 cut(s)	1248
BspT107I	GGYRCC	2 cut(s)	101, 380
BspTI	CTTAAG	1 cut(s)	65
BsrDI	GCAATG	4 cut(s)	51, 240, 538, 904
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	5 cut(s)	382, 384, 440, 1030, 1142
BssECI	CCNNGG	3 cut(s)	820, 1149, 1321
BssMI	GATC	6 cut(s)	174, 361, 910, 1105, 1183, 1255
BssT1I	CCWWGG	2 cut(s)	820, 1149
Bst2UI	CCWGG	1 cut(s)	1323
Bst4CI	ACNGT	5 cut(s)	352, 611, 918, 962, 1341
Bst6I	CTCTTC	3 cut(s)	12, 587, 1248
BstAFI	CTTAAG	1 cut(s)	65
BstAUI	TGTACA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	1311
BstDEI	CTNAG	3 cut(s)	408, 927, 951
BstDSI	CCRYGG	1 cut(s)	1149
BstENI	CCTNNNNNAGG	1 cut(s)	851
BstF5I	GGATG	6 cut(s)	278, 396, 628, 801, 813, 1054
BstKTI	GATC	6 cut(s)	177, 364, 913, 1108, 1186, 1258
BstMAI	GTCTC	1 cut(s)	531
BstMBI	GATC	6 cut(s)	174, 361, 910, 1105, 1183, 1255
BstMWI	GCNNNNNNNGC	4 cut(s)	301, 661, 757, 1201
BstNI	CCWGG	1 cut(s)	1323
BstNSI	RCATGY	4 cut(s)	313, 659, 1303, 1313
BstSCI	CCNGG	1 cut(s)	1321
BstV1I	GCAGC	1 cut(s)	506
BstV2I	GAAGAC	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	5 cut(s)	201, 273, 842, 945, 1276
BtgI	CCRYGG	1 cut(s)	1149
BtsCI	GGATG	6 cut(s)	278, 396, 628, 801, 813, 1054
BtsI	GCAGTG	1 cut(s)	594
BtsIMutI	CAGTG	6 cut(s)	216, 391, 447, 594, 923, 1023
BveI	ACCTGC	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	1311
CciI	TCATGA	3 cut(s)	78, 763, 850
Csp6I	GTAC	6 cut(s)	190, 230, 375, 433, 902, 1110
CviQI	GTAC	6 cut(s)	190, 230, 375, 433, 902, 1110
DdeI	CTNAG	3 cut(s)	408, 927, 951
DpnI	GATC	6 cut(s)	176, 363, 912, 1107, 1185, 1257
DpnII	GATC	6 cut(s)	174, 361, 910, 1105, 1183, 1255
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	12, 587, 1248
EarI	CTCTTC	3 cut(s)	12, 587, 1248
Eco130I	CCWWGG	2 cut(s)	820, 1149
Eco88I	CYCGRG	1 cut(s)	579
EcoNI	CCTNNNNNAGG	1 cut(s)	851
EcoRII	CCWGG	1 cut(s)	1321
EcoT14I	CCWWGG	2 cut(s)	820, 1149
ErhI	CCWWGG	2 cut(s)	820, 1149
FaqI	GGGAC	2 cut(s)	239, 812
FauNDI	CATATG	1 cut(s)	879
FbaI	TGATCA	2 cut(s)	361, 910
Fnu4HI	GCNGC	1 cut(s)	495
FokI	GGATG	6 cut(s)	265, 403, 635, 788, 820, 1061
Fsp4HI	GCNGC	1 cut(s)	495
FspBI	CTAG	4 cut(s)	402, 429, 894, 1158
GluI	GCNGC	1 cut(s)	495
HaeIII	GGCC	5 cut(s)	201, 273, 842, 945, 1276
HapII	CCGG	2 cut(s)	805, 965
HindIII	AAGCTT	2 cut(s)	20, 929
HinfI	GANTC	5 cut(s)	4, 696, 975, 989, 1096
HpaII	CCGG	2 cut(s)	805, 965
HphI	GGTGA	6 cut(s)	136, 166, 184, 424, 476, 1040
Hpy166II	GTNNAC	3 cut(s)	230, 474, 773
Hpy188III	TCNNGA	5 cut(s)	79, 764, 805, 851, 1259
Hpy8I	GTNNAC	3 cut(s)	230, 474, 773
HpyAV	CCTTC	3 cut(s)	158, 331, 857
HpyCH4III	ACNGT	5 cut(s)	352, 611, 918, 962, 1341
HpyCH4V	TGCA	4 cut(s)	56, 424, 587, 751
HpyF10VI	GCNNNNNNNGC	4 cut(s)	301, 661, 757, 1201
HpyF3I	CTNAG	3 cut(s)	408, 927, 951
Kpn2I	TCCGGA	1 cut(s)	804
Ksp22I	TGATCA	2 cut(s)	361, 910
Kzo9I	GATC	6 cut(s)	174, 361, 910, 1105, 1183, 1255
LguI	GCTCTTC	1 cut(s)	1248
Lsp1109I	GCAGC	1 cut(s)	506
MaeI	CTAG	4 cut(s)	402, 429, 894, 1158
MaeIII	GTNAC	3 cut(s)	124, 464, 605
MalI	GATC	6 cut(s)	176, 363, 912, 1107, 1185, 1257
MboI	GATC	6 cut(s)	174, 361, 910, 1105, 1183, 1255
MboII	GAAGA	5 cut(s)	39, 604, 1223, 1235, 1286
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	3 cut(s)	318, 1083, 1190
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	1105
MmeI	TCCRAC	1 cut(s)	1026
Mox20I	TGGCCA	1 cut(s)	273
MroI	TCCGGA	1 cut(s)	804
MroXI	GAANNNNTTC	1 cut(s)	1293
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	6 cut(s)	66, 306, 447, 479, 570, 1142
MslI	CAYNNNNRTG	4 cut(s)	440, 621, 806, 983
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	367
MspCI	CTTAAG	1 cut(s)	65
MspI	CCGG	2 cut(s)	805, 965
MspR9I	CCNGG	1 cut(s)	1323
MvaI	CCWGG	1 cut(s)	1323
MwoI	GCNNNNNNNGC	4 cut(s)	301, 661, 757, 1201
NcoI	CCATGG	1 cut(s)	1149
NdeI	CATATG	1 cut(s)	879
NdeII	GATC	6 cut(s)	174, 361, 910, 1105, 1183, 1255
NlaIV	GGNNCC	3 cut(s)	103, 382, 924
NmeAIII	GCCGAG	1 cut(s)	1302
NmuCI	GTSAC	3 cut(s)	124, 464, 605
NspI	RCATGY	4 cut(s)	313, 659, 1303, 1313
PaeI	GCATGC	1 cut(s)	1313
PaeR7I	CTCGAG	1 cut(s)	579
PagI	TCATGA	3 cut(s)	78, 763, 850
PciI	ACATGT	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	1248
PdmI	GAANNNNTTC	1 cut(s)	1293
PfeI	GAWTC	3 cut(s)	696, 975, 989
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	496
PleI	GAGTC	1 cut(s)	1104
PpsI	GAGTC	1 cut(s)	1104
PscI	ACATGT	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	1321
PspGI	CCWGG	1 cut(s)	1321
PspN4I	GGNNCC	3 cut(s)	103, 382, 924
PspXI	VCTCGAGB	1 cut(s)	579
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	6 cut(s)	191, 231, 376, 434, 903, 1111
RsaNI	GTAC	6 cut(s)	190, 230, 375, 433, 902, 1110
RseI	CAYNNNNRTG	4 cut(s)	440, 621, 806, 983
SapI	GCTCTTC	1 cut(s)	1248
SaqAI	TTAA	6 cut(s)	66, 306, 447, 479, 570, 1142
SatI	GCNGC	1 cut(s)	495
Sau3AI	GATC	6 cut(s)	174, 361, 910, 1105, 1183, 1255
SchI	GAGTC	1 cut(s)	1105
ScrFI	CCNGG	1 cut(s)	1323
Sfr274I	CTCGAG	1 cut(s)	579
SlaI	CTCGAG	1 cut(s)	579
SmiMI	CAYNNNNRTG	4 cut(s)	440, 621, 806, 983
SmlI	CTYRAG	4 cut(s)	65, 488, 579, 1304
SmoI	CTYRAG	4 cut(s)	65, 488, 579, 1304
SpeI	ACTAGT	1 cut(s)	401
SphI	GCATGC	1 cut(s)	1313
Sse9I	AATT	3 cut(s)	318, 1083, 1190
SspI	AATATT	1 cut(s)	1016
SspMI	CTAG	4 cut(s)	402, 429, 894, 1158
StyD4I	CCNGG	1 cut(s)	1321
StyI	CCWWGG	2 cut(s)	820, 1149
TaaI	ACNGT	5 cut(s)	352, 611, 918, 962, 1341
TaqI	TCGA	3 cut(s)	580, 699, 1315
TasI	AATT	3 cut(s)	318, 1083, 1190
TatI	WGTACW	3 cut(s)	229, 374, 901
TfiI	GAWTC	3 cut(s)	696, 975, 989
Tru1I	TTAA	6 cut(s)	66, 306, 447, 479, 570, 1142
Tru9I	TTAA	6 cut(s)	66, 306, 447, 479, 570, 1142
TscAI	CASTG	6 cut(s)	223, 391, 447, 594, 923, 1030
TseFI	GTSAC	3 cut(s)	124, 464, 605
TseI	GCWGC	1 cut(s)	494
Tsp45I	GTSAC	3 cut(s)	124, 464, 605
TspDTI	ATGAA	8 cut(s)	17, 95, 341, 619, 752, 780, 824, 839
TspRI	CASTG	6 cut(s)	223, 391, 447, 594, 923, 1030
Van91I	CCANNNNNTGG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	65
XagI	CCTNNNNNAGG	1 cut(s)	851
XceI	RCATGY	4 cut(s)	313, 659, 1303, 1313
XhoI	CTCGAG	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	1293
XspI	CTAG	4 cut(s)	402, 429, 894, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.