RchiOBHm_Chr1g0378371

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
64912905 .. 64915047
2143 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60179

Sequence Viewer

Length: 1404 bp
ATGACTCTGCTCTCTGATAAGCTCCTTCATCTCTCTGAAACTATGTCTTCCACTACATTATCTCTGAAGCAAATGCTCATGAAGCCAACCTCATTGTTTGGTGCCAAGTTATGGGTTCTGCTTGTGACCTTCACTGTTCTATTCACCCTTCTGGTGATTGTCTTTGTCTTGGTGATCTATATCATCCGGTACCGCCGGCACCGGAAGTCCTACAATTCCCATTTGTGTGTACAAAATCCCATTGCTTCCAAAGCCCCTCACATTGCTTATGGTCACTCATCTCTTGATCGGAGGCTGCTTTCGCTTAACATGTCCAAAATTGAGATGAACAATGGGAAGGAGAGGCAAACTGTGCTCTCTGATCAGCTGTCCTCTACTGGCGCCAGCGGGATAACCCCCACTAGTACTAAGGTGAGTGAATCGGAATCTAGGTACTCTTCGGTGGTTAAAGATGTGTGGAGGGGTGACAAGTTTACTCTAAGGGAACTTGAGGCAGCAACAAATGGGTTTGGTAGAGAAAATCTGATTGGCAATGGAGACTATGGCATTGTATATCACGGTATTCTGTTTGATAATATTCGTGTGGCGGTGAAGAGGCTTGTGAGTGACAGTTGCCATGAGGATGACTTCATAGCAGAAATGGAGGCGATTGGGCATGTGAGACACAAAAATCTTGTCAAGATGCTTGGATACAGAATCGAAAGAGCTTACAGATTGCTTGTGCATGAGTATGTAGATAACAAAAGTCTGCACCATTGGCTTCATGAATGTTCAAGAAGTGTCAGCCCTCTAACATGGGATATTCGGATGAAAATAATCCATGGAATAGCAAAAGGATTGGCCTACCTTCATGAGGATATTGAACCAAAAATTTTCCATAGAAGCCTAATATCTAGCAATGTACTGCTTGGTCACCAATGGGATCCTAAGATTTCTGATTTTGGCCTTGCTAAGCTATACAGTCCGGCGTGGGGAATCACCATAATGGAATCGTTAGGTTATGTTGCCCCAGAATATGCTGCCACTGGTGATTTTAATGAGAAGTCGGATGTTTATAGCTTCGGAGTGTTGATTATGGAGATAATTTCTGGCAGGACTCCTATTGACCGCACTCAACACCAACCATATCTGGTAGACTGGTTAAAGTCCATGGTTGCCAGTCAAAGAACTGCTTATGTAGTTGATCCTAAATTACCAGAGAAGCCATCTTCAAAAGAACTCAAAAGGGTTCTTCTGGTTGCTCTTCGTTGCGCTGATCCTGATTTAGAAGATAGGCCTAGAATGGGAGAAGTTCTTCACATGCTTGAGCCCCGCGACTTGCTAATGCTCGACGATCGATGGCTTAAGAGATCGAGAGACTGCTCATCATCTTTGCCTACAAGAGAGCTTCTGCAAGAACGATGA

Protein Analysis

467

Amino Acids

53.35

Weight (kDa)

8.85

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 172 - 433 8.2e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 174 - 434 6.8e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017368)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30240
malus_domestica MD01G1208500.v1.1
prunus_persica Prupe.2G301100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0378371
rosa_laevigata RLG00000026440
rosa_multiflora Rmu_sc0013545.1_g000010
rosa_roxburghii Rroxscaffold_4G00280500
rosa_rugosa Rorug01G0408300
rosa_samantha Rh1AG429800 Rh1BG387500 Rh1CG401000 Rh1DG418600
rosa_wichuraiana Rw1G037610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 4 cut(s) 101, 189, 198, 380
AccB7I CCANNNNNTGG 1 cut(s) 111
AccI GTMKAC 1 cut(s) 1134
AccII CGCG 1 cut(s) 1314
AciI CCGC 5 cut(s) 193, 387, 587, 1108, 1312
AclWI GGATC 4 cut(s) 917, 930, 1178, 1250
AcsI RAATTY 1 cut(s) 870
AcuI CTGAAG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 5 cut(s) 191, 231, 406, 434, 903
AfiI CCNNNNNNNGG 4 cut(s) 111, 853, 971, 1283
AflII CTTAAG 1 cut(s) 1343
AflIII ACRYGT 1 cut(s) 309
AgsI TTSAA 3 cut(s) 774, 863, 1212
AhlI ACTAGT 1 cut(s) 401
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AluBI AGCT 6 cut(s) 22, 367, 707, 955, 1059, 1387
AluI AGCT 6 cut(s) 22, 367, 707, 955, 1059, 1387
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 3 cut(s) 531, 655, 1350
AlwI GGATC 4 cut(s) 917, 930, 1178, 1250
AoxI GGCC 3 cut(s) 840, 943, 1274
ApeKI GCWGC 3 cut(s) 295, 494, 1019
ApoI RAATTY 1 cut(s) 870
ArsI GACNNNNNNTTYG 2 cut(s) 660, 692
Asp700I GAANNNNTTC 1 cut(s) 1293
Asp718I GGTACC 1 cut(s) 189
AspLEI GCGC 2 cut(s) 383, 1253
AsuHPI GGTGA 9 cut(s) 136, 166, 184, 424, 476, 601, 905, 970, 1040
BamHI GGATCC 1 cut(s) 922
BanI GGYRCC 4 cut(s) 101, 189, 198, 380
BanII GRGCYC 1 cut(s) 1311
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 3 cut(s) 282, 506, 1006
BccI CCATC 2 cut(s) 1213, 1332
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 3 cut(s) 531, 655, 1350
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 4 cut(s) 402, 429, 894, 1278
BfoI RGCGCY 1 cut(s) 384
BfrI CTTAAG 1 cut(s) 1343
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 3 cut(s) 296, 495, 1020
BlpI GCTNAGC 1 cut(s) 951
BlsI GCNGC 3 cut(s) 297, 496, 1021
BmcAI AGTACT 1 cut(s) 406
BmiI GGNNCC 5 cut(s) 103, 191, 200, 382, 924
BmsI GCATC 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 951
BpuEI CTTGAG 2 cut(s) 509, 1325
Bsa29I ATCGAT 1 cut(s) 1336
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 381
BsaJI CCNNGG 2 cut(s) 820, 1149
BsaWI WCCGGW 2 cut(s) 186, 201
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 853, 971, 1283
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 4 cut(s) 382, 1030, 1142, 1158
Bse3DI GCAATG 4 cut(s) 240, 261, 538, 904
Bse8I GATNNNNATC 1 cut(s) 179
BseCI ATCGAT 1 cut(s) 1336
BseDI CCNNGG 2 cut(s) 820, 1149
BseGI GGATG 4 cut(s) 183, 628, 813, 1054
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 4 cut(s) 111, 853, 971, 1283
BseMI GCAATG 4 cut(s) 240, 261, 538, 904
BseNI ACTGG 4 cut(s) 382, 1030, 1142, 1158
BseXI GCAGC 3 cut(s) 282, 506, 1006
BsgI GTGCAG 1 cut(s) 734
Bsh1236I CGCG 1 cut(s) 1314
Bsh1285I CGRYCG 1 cut(s) 1336
BshFI GGCC 3 cut(s) 842, 945, 1276
BshNI GGYRCC 4 cut(s) 101, 189, 198, 380
BshVI ATCGAT 1 cut(s) 1336
BsiEI CGRYCG 1 cut(s) 1336
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 4 cut(s) 187, 196, 202, 965
BslI CCNNNNNNNGG 4 cut(s) 111, 853, 971, 1283
BsmAI GTCTC 3 cut(s) 531, 655, 1350
BsnI GGCC 3 cut(s) 842, 945, 1276
Bsp1286I GDGCHC 2 cut(s) 357, 1311
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 8 cut(s) 174, 286, 361, 922, 1183, 1255, 1333, 1349
Bsp1720I GCTNAGC 1 cut(s) 951
Bsp19I CCATGG 2 cut(s) 820, 1149
BspACI CCGC 5 cut(s) 193, 387, 587, 1108, 1312
BspANI GGCC 3 cut(s) 842, 945, 1276
BspDI ATCGAT 1 cut(s) 1336
BspFNI CGCG 1 cut(s) 1314
BspHI TCATGA 3 cut(s) 78, 763, 850
BspLI GGNNCC 5 cut(s) 103, 191, 200, 382, 924
BspPI GGATC 4 cut(s) 917, 930, 1178, 1250
BspQI GCTCTTC 1 cut(s) 1248
BspT107I GGYRCC 4 cut(s) 101, 189, 198, 380
BspTI CTTAAG 1 cut(s) 1343
BsrDI GCAATG 4 cut(s) 240, 261, 538, 904
BsrFI RCCGGY 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 229
BsrI ACTGG 4 cut(s) 382, 1030, 1142, 1158
BssAI RCCGGY 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 820, 1149
BssMI GATC 8 cut(s) 174, 286, 361, 922, 1183, 1255, 1333, 1349
BssNI GRCGYC 1 cut(s) 381
BssT1I CCWWGG 2 cut(s) 820, 1149
Bst4CI ACNGT 5 cut(s) 136, 352, 560, 611, 962
Bst6I CTCTTC 3 cut(s) 442, 587, 1248
BstACI GRCGYC 1 cut(s) 381
BstAFI CTTAAG 1 cut(s) 1343
BstAPI GCANNNNNTGC 1 cut(s) 352
BstAUI TGTACA 1 cut(s) 229
BstC8I GCNNGC 2 cut(s) 197, 385
BstDEI CTNAG 4 cut(s) 408, 479, 927, 951
BstDSI CCRYGG 2 cut(s) 820, 1149
BstEII GGTNACC 1 cut(s) 911
BstENI CCTNNNNNAGG 1 cut(s) 851
BstF5I GGATG 4 cut(s) 183, 628, 813, 1054
BstFNI CGCG 1 cut(s) 1314
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 2 cut(s) 383, 1253
BstKTI GATC 8 cut(s) 177, 289, 364, 925, 1186, 1258, 1336, 1352
BstMAI GTCTC 3 cut(s) 531, 655, 1350
BstMBI GATC 8 cut(s) 174, 286, 361, 922, 1183, 1255, 1333, 1349
BstMCI CGRYCG 1 cut(s) 1336
BstMWI GCNNNNNNNGC 5 cut(s) 82, 251, 301, 352, 757
BstNSI RCATGY 3 cut(s) 313, 659, 1303
BstPI GGTNACC 1 cut(s) 911
BstUI CGCG 1 cut(s) 1314
BstV1I GCAGC 3 cut(s) 282, 506, 1006
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 922
BstYI RGATCY 1 cut(s) 922
Bsu15I ATCGAT 1 cut(s) 1336
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 3 cut(s) 842, 945, 1276
BsuTUI ATCGAT 1 cut(s) 1336
BtgI CCRYGG 2 cut(s) 820, 1149
BtsCI GGATG 4 cut(s) 183, 628, 813, 1054
BtsIMutI CAGTG 2 cut(s) 132, 1023
Cac8I GCNNGC 2 cut(s) 197, 385
CciI TCATGA 3 cut(s) 78, 763, 850
CfoI GCGC 2 cut(s) 383, 1253
Cfr10I RCCGGY 1 cut(s) 195
ClaI ATCGAT 1 cut(s) 1336
Csp6I GTAC 5 cut(s) 190, 230, 405, 433, 902
CviQI GTAC 5 cut(s) 190, 230, 405, 433, 902
DdeI CTNAG 4 cut(s) 408, 479, 927, 951
DinI GGCGCC 1 cut(s) 382
DpnI GATC 8 cut(s) 176, 288, 363, 924, 1185, 1257, 1335, 1351
DpnII GATC 8 cut(s) 174, 286, 361, 922, 1183, 1255, 1333, 1349
Eam1104I CTCTTC 3 cut(s) 442, 587, 1248
EarI CTCTTC 3 cut(s) 442, 587, 1248
Eco130I CCWWGG 2 cut(s) 820, 1149
Eco147I AGGCCT 1 cut(s) 1276
Eco24I GRGCYC 1 cut(s) 1311
Eco57I CTGAAG 1 cut(s) 86
Eco91I GGTNACC 1 cut(s) 911
EcoNI CCTNNNNNAGG 1 cut(s) 851
EcoO65I GGTNACC 1 cut(s) 911
EcoT14I CCWWGG 2 cut(s) 820, 1149
EcoT38I GRGCYC 1 cut(s) 1311
EgeI GGCGCC 1 cut(s) 382
EheI GGCGCC 1 cut(s) 382
ErhI CCWWGG 2 cut(s) 820, 1149
FalI AAGNNNNNCTT 2 cut(s) 1156, 1188
FauI CCCGC 2 cut(s) 380, 1319
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 1134
Fnu4HI GCNGC 3 cut(s) 296, 495, 1020
FokI GGATG 4 cut(s) 170, 635, 820, 1061
FriOI GRGCYC 1 cut(s) 1311
Fsp4HI GCNGC 3 cut(s) 296, 495, 1020
FspBI CTAG 4 cut(s) 402, 429, 894, 1278
GlaI GCGC 2 cut(s) 382, 1252
GluI GCNGC 3 cut(s) 296, 495, 1020
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 3 cut(s) 842, 945, 1276
HapII CCGG 4 cut(s) 187, 196, 202, 965
HhaI GCGC 2 cut(s) 383, 1253
Hin1I GRCGYC 1 cut(s) 381
Hin6I GCGC 2 cut(s) 381, 1251
HinP1I GCGC 2 cut(s) 381, 1251
HinfI GANTC 7 cut(s) 4, 419, 425, 696, 975, 989, 1096
HpaII CCGG 4 cut(s) 187, 196, 202, 965
HphI GGTGA 9 cut(s) 136, 166, 184, 424, 476, 601, 905, 970, 1040
Hpy166II GTNNAC 3 cut(s) 230, 474, 1135
Hpy188III TCNNGA 8 cut(s) 79, 284, 679, 764, 774, 851, 1259, 1353
Hpy8I GTNNAC 3 cut(s) 230, 474, 1135
Hpy99I CGWCG 1 cut(s) 1334
HpyAV CCTTC 5 cut(s) 35, 139, 158, 331, 857
HpyCH4III ACNGT 5 cut(s) 136, 352, 560, 611, 962
HpyCH4V TGCA 3 cut(s) 724, 751, 1393
HpyF10VI GCNNNNNNNGC 5 cut(s) 82, 251, 301, 352, 757
HpyF3I CTNAG 4 cut(s) 408, 479, 927, 951
Hsp92I GRCGYC 1 cut(s) 381
HspAI GCGC 2 cut(s) 381, 1251
KasI GGCGCC 1 cut(s) 380
KpnI GGTACC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 8 cut(s) 174, 286, 361, 922, 1183, 1255, 1333, 1349
LguI GCTCTTC 1 cut(s) 1248
LmnI GCTCC 1 cut(s) 27
Lsp1109I GCAGC 3 cut(s) 282, 506, 1006
LweI GCATC 1 cut(s) 672
MaeI CTAG 4 cut(s) 402, 429, 894, 1278
MaeIII GTNAC 5 cut(s) 124, 272, 464, 605, 911
MalI GATC 8 cut(s) 176, 288, 363, 924, 1185, 1257, 1335, 1351
MboI GATC 8 cut(s) 174, 286, 361, 922, 1183, 1255, 1333, 1349
MboII GAAGA 8 cut(s) 39, 429, 604, 1200, 1223, 1235, 1280, 1286
MflI RGATCY 1 cut(s) 922
MhlI GDGCHC 2 cut(s) 357, 1311
MluCI AATT 5 cut(s) 214, 318, 870, 1083, 1190
Mly113I GGCGCC 1 cut(s) 381
MlyI GAGTC 1 cut(s) 1090
MmeI TCCRAC 1 cut(s) 1026
MroNI GCCGGC 1 cut(s) 195
MroXI GAANNNNTTC 1 cut(s) 1293
MseI TTAA 5 cut(s) 306, 447, 1035, 1142, 1344
MslI CAYNNNNRTG 4 cut(s) 225, 621, 729, 983
MspA1I CMGCKG 2 cut(s) 367, 387
MspCI CTTAAG 1 cut(s) 1343
MspI CCGG 4 cut(s) 187, 196, 202, 965
MvnI CGCG 1 cut(s) 1314
MwoI GCNNNNNNNGC 5 cut(s) 82, 251, 301, 352, 757
NaeI GCCGGC 1 cut(s) 197
NarI GGCGCC 1 cut(s) 381
NcoI CCATGG 2 cut(s) 820, 1149
NdeII GATC 8 cut(s) 174, 286, 361, 922, 1183, 1255, 1333, 1349
NgoMIV GCCGGC 1 cut(s) 195
NlaIV GGNNCC 5 cut(s) 103, 191, 200, 382, 924
NmuCI GTSAC 5 cut(s) 124, 272, 464, 605, 911
NspI RCATGY 3 cut(s) 313, 659, 1303
PagI TCATGA 3 cut(s) 78, 763, 850
PceI AGGCCT 1 cut(s) 1276
PciI ACATGT 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 1248
PdiI GCCGGC 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 1293
PfeI GAWTC 5 cut(s) 419, 425, 696, 975, 989
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 3 cut(s) 297, 496, 1021
Ple19I CGATCG 1 cut(s) 1336
PleI GAGTC 1 cut(s) 1090
PluTI GGCGCC 1 cut(s) 384
PpsI GAGTC 1 cut(s) 1090
PscI ACATGT 1 cut(s) 309
PspEI GGTNACC 1 cut(s) 911
PspN4I GGNNCC 5 cut(s) 103, 191, 200, 382, 924
PsuI RGATCY 1 cut(s) 922
PvuI CGATCG 1 cut(s) 1336
PvuII CAGCTG 1 cut(s) 367
RsaI GTAC 5 cut(s) 191, 231, 406, 434, 903
RsaNI GTAC 5 cut(s) 190, 230, 405, 433, 902
RseI CAYNNNNRTG 4 cut(s) 225, 621, 729, 983
SapI GCTCTTC 1 cut(s) 1248
SaqAI TTAA 5 cut(s) 306, 447, 1035, 1142, 1344
SatI GCNGC 3 cut(s) 296, 495, 1020
Sau3AI GATC 8 cut(s) 174, 286, 361, 922, 1183, 1255, 1333, 1349
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 1 cut(s) 1090
SduI GDGCHC 2 cut(s) 357, 1311
SfaNI GCATC 1 cut(s) 672
SfoI GGCGCC 1 cut(s) 382
SmiMI CAYNNNNRTG 4 cut(s) 225, 621, 729, 983
SmlI CTYRAG 3 cut(s) 488, 1304, 1343
SmoI CTYRAG 3 cut(s) 488, 1304, 1343
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 5 cut(s) 214, 318, 870, 1083, 1190
SseBI AGGCCT 1 cut(s) 1276
SsiI CCGC 5 cut(s) 193, 387, 587, 1108, 1312
SspDI GGCGCC 1 cut(s) 380
SspI AATATT 1 cut(s) 577
SspMI CTAG 4 cut(s) 402, 429, 894, 1278
StuI AGGCCT 1 cut(s) 1276
StyI CCWWGG 2 cut(s) 820, 1149
TaaI ACNGT 5 cut(s) 136, 352, 560, 611, 962
TaqI TCGA 4 cut(s) 699, 1329, 1336, 1352
TasI AATT 5 cut(s) 214, 318, 870, 1083, 1190
TatI WGTACW 3 cut(s) 229, 404, 901
TfiI GAWTC 5 cut(s) 419, 425, 696, 975, 989
Tru1I TTAA 5 cut(s) 306, 447, 1035, 1142, 1344
Tru9I TTAA 5 cut(s) 306, 447, 1035, 1142, 1344
TscAI CASTG 2 cut(s) 139, 1030
TseFI GTSAC 5 cut(s) 124, 272, 464, 605, 911
TseI GCWGC 3 cut(s) 295, 494, 1019
Tsp45I GTSAC 5 cut(s) 124, 272, 464, 605, 911
TspDTI ATGAA 8 cut(s) 17, 95, 341, 619, 752, 780, 824, 839
TspRI CASTG 2 cut(s) 139, 1030
Van91I CCANNNNNTGG 1 cut(s) 111
Vha464I CTTAAG 1 cut(s) 1343
XagI CCTNNNNNAGG 1 cut(s) 851
XapI RAATTY 1 cut(s) 870
XceI RCATGY 3 cut(s) 313, 659, 1303
XmiI GTMKAC 1 cut(s) 1134
XmnI GAANNNNTTC 1 cut(s) 1293
XspI CTAG 4 cut(s) 402, 429, 894, 1278
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.