RLG00000026440

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
3065688 .. 3067576
1889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026440

Sequence Viewer

Length: 1362 bp
ATGTCTTCCACTACATTATCTCTGAAGCAAAAGCTCATGGAGCCAACCTCATTGTTTGGTGCCAAGTTATGGGTTCTGCTTGTGACCTTCACTGTTCTATTCACCCTTCTGGTGATTGTCTTTGTCTTGGTGATCTATATCATCCGGTACCGCCGGCACCGGAAGTCCTACAATTCCCATTTGTGTGTACAAAATCCCATTGCTTCCAAAGTCCCTCACATTGCTTATGGCCACTCATCTCTTGATCGGAGGCTGCTTTCGCTTAACATGTCCGAAATTGAGATGAACAATGGGAAGGAGAGGCAGACTGTGCTCTCTGATCAGCTGTCCTCTACTGGCGCCAGTGGGATAACCCCCACTAGTACTAAGGTGAGTGAATCGGAATCTAGGTACTCTTCGGTGGTTAAAGATGTGTGGAGGGGTGACAAGTTTACTCTAAGGGAACTTGAGGCAGCAACAAATGGGTTTGGTAGAGAAAATCTGATTGGCAATGGAGACTATGGCATTGTATATCATGGTATTCTGTTTGATAATATTCGTGTGGCGGTGAAGAGGCTTGTGAGTGACAGTTGCCATGAGGATGACTTCATAGCAGAAATGGAGGCGATTGGGCATGTGAGACACAAAAATCTTGTCAAGATGCTTGGATACAGAATCGAAAGAGCTTACAGATTGCTTGTGCATGAGTATGTAGATAACAAAAGTCTGCACCATTGGCTTCATGAATGTTCAAGAAGTGTCAGCCCTCTAACATGGGACATTCGGATGAAAATAATCCATGGAATAGCAAAAGGATTGGCCTACCTTCATGAGGATATTGAACCAAAAATTTTCCATAGAAGCCTAATATCTAGCAATGTACTGCTTGATCACCAATGGGATCCTAAGATTTCTGATTTTGGCCTTGCTAAGCTATACAGTCCGGCGTGGGGAATCACCATAATGGAATCGTTAGGTTATGTTGCCCCAGAATATGCTGCCACTGGTGATTTTAATGAGAAGTCGGATATTTATAGCTTCGGAGTGTTGATTATGGAGATAATTTCTGGCAGGACTCCTATTGACCGCACTCAACACCAACCATATCTGGTGGACTGGTTAAAGTCCATGGTTGCCAGTCAAAGAACTGCTTATGTAGTTGATCCTAAATTGCCAGAGAAGCCATCTTCAAAAGAACTCAAAAGGGTACTTCTGGTTGCTCTTCGTTGCGCTGATCCTGATTTAGAAGATAGGCCTAGAATGGGAGAAGTTCTTCACATGCTTGAGCCCCGCAACTGGCTAATGCGCGACGATCGATGGCTTAAGAGATCAAGAGACTGCTCATCATATTTGCCTACAAGAGAGCTTCTGCAAGAACGATGA

Protein Analysis

454

Amino Acids

52.06

Weight (kDa)

8.74

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 158 - 419 8.9e-38 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 160 - 420 9.2e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017368)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30240
malus_domestica MD01G1208500.v1.1
prunus_persica Prupe.2G301100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0378371
rosa_laevigata RLG00000026440
rosa_multiflora Rmu_sc0013545.1_g000010
rosa_roxburghii Rroxscaffold_4G00280500
rosa_rugosa Rorug01G0408300
rosa_samantha Rh1AG429800 Rh1BG387500 Rh1CG401000 Rh1DG418600
rosa_wichuraiana Rw1G037610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 147
AccB1I GGYRCC 4 cut(s) 59, 147, 156, 338
AccB7I CCANNNNNTGG 1 cut(s) 69
AccII CGCG 1 cut(s) 1287
AciI CCGC 4 cut(s) 151, 545, 1066, 1270
AclWI GGATC 4 cut(s) 875, 888, 1136, 1208
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 828
AcuI CTGAAG 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 339
AfaI GTAC 6 cut(s) 149, 189, 364, 392, 861, 1188
AfiI CCNNNNNNNGG 5 cut(s) 69, 811, 929, 1241, 1275
AflII CTTAAG 1 cut(s) 1301
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 3 cut(s) 732, 821, 1170
AhlI ACTAGT 1 cut(s) 359
AjuI GAANNNNNNNTTGG 2 cut(s) 468, 500
AluBI AGCT 6 cut(s) 34, 325, 665, 913, 1017, 1345
AluI AGCT 6 cut(s) 34, 325, 665, 913, 1017, 1345
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 3 cut(s) 489, 613, 1308
AlwI GGATC 4 cut(s) 875, 888, 1136, 1208
AoxI GGCC 4 cut(s) 229, 798, 901, 1232
ApeKI GCWGC 3 cut(s) 253, 452, 977
ApoI RAATTY 1 cut(s) 828
ArsI GACNNNNNNTTYG 2 cut(s) 618, 650
Asp700I GAANNNNTTC 1 cut(s) 1251
Asp718I GGTACC 1 cut(s) 147
AspLEI GCGC 3 cut(s) 341, 1211, 1287
AsuHPI GGTGA 9 cut(s) 94, 124, 142, 382, 434, 559, 863, 928, 998
BalI TGGCCA 1 cut(s) 231
BamHI GGATCC 1 cut(s) 880
BanI GGYRCC 4 cut(s) 59, 147, 156, 338
BanII GRGCYC 1 cut(s) 1269
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 3 cut(s) 240, 464, 964
BccI CCATC 2 cut(s) 1171, 1290
BciVI GTATCC 1 cut(s) 641
BclI TGATCA 2 cut(s) 319, 868
BcoDI GTCTC 3 cut(s) 489, 613, 1308
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 4 cut(s) 360, 387, 852, 1236
BfoI RGCGCY 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 1301
BfuI GTATCC 1 cut(s) 641
BisI GCNGC 3 cut(s) 254, 453, 978
BlpI GCTNAGC 1 cut(s) 909
BlsI GCNGC 3 cut(s) 255, 454, 979
BmcAI AGTACT 1 cut(s) 364
BmiI GGNNCC 6 cut(s) 42, 61, 149, 158, 340, 882
BmsI GCATC 1 cut(s) 630
BplI GAGNNNNNCTC 2 cut(s) 32, 64
Bpu1102I GCTNAGC 1 cut(s) 909
BpuEI CTTGAG 2 cut(s) 467, 1283
Bsa29I ATCGAT 1 cut(s) 1294
BsaBI GATNNNNATC 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 339
BsaJI CCNNGG 2 cut(s) 778, 1107
BsaWI WCCGGW 2 cut(s) 144, 159
Bsc4I CCNNNNNNNGG 5 cut(s) 69, 811, 929, 1241, 1275
Bse118I RCCGGY 1 cut(s) 153
Bse1I ACTGG 6 cut(s) 340, 342, 988, 1100, 1116, 1280
Bse3DI GCAATG 4 cut(s) 198, 219, 496, 862
Bse8I GATNNNNATC 1 cut(s) 137
BseCI ATCGAT 1 cut(s) 1294
BseDI CCNNGG 2 cut(s) 778, 1107
BseGI GGATG 3 cut(s) 141, 586, 771
BseJI GATNNNNATC 1 cut(s) 137
BseLI CCNNNNNNNGG 5 cut(s) 69, 811, 929, 1241, 1275
BseMI GCAATG 4 cut(s) 198, 219, 496, 862
BseNI ACTGG 6 cut(s) 340, 342, 988, 1100, 1116, 1280
BseXI GCAGC 3 cut(s) 240, 464, 964
BsgI GTGCAG 1 cut(s) 692
Bsh1236I CGCG 1 cut(s) 1287
Bsh1285I CGRYCG 1 cut(s) 1294
BshFI GGCC 4 cut(s) 231, 800, 903, 1234
BshNI GGYRCC 4 cut(s) 59, 147, 156, 338
BshVI ATCGAT 1 cut(s) 1294
BsiEI CGRYCG 1 cut(s) 1294
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 4 cut(s) 145, 154, 160, 923
BslFI GGGAC 2 cut(s) 197, 770
BslI CCNNNNNNNGG 5 cut(s) 69, 811, 929, 1241, 1275
BsmAI GTCTC 3 cut(s) 489, 613, 1308
BsmFI GGGAC 2 cut(s) 197, 770
BsnI GGCC 4 cut(s) 231, 800, 903, 1234
Bsp1286I GDGCHC 2 cut(s) 315, 1269
Bsp1407I TGTACA 1 cut(s) 187
Bsp143I GATC 9 cut(s) 132, 244, 319, 868, 880, 1141, 1213, 1291, 1307
Bsp1720I GCTNAGC 1 cut(s) 909
Bsp19I CCATGG 2 cut(s) 778, 1107
BspACI CCGC 4 cut(s) 151, 545, 1066, 1270
BspANI GGCC 4 cut(s) 231, 800, 903, 1234
BspDI ATCGAT 1 cut(s) 1294
BspFNI CGCG 1 cut(s) 1287
BspHI TCATGA 2 cut(s) 721, 808
BspLI GGNNCC 6 cut(s) 42, 61, 149, 158, 340, 882
BspPI GGATC 4 cut(s) 875, 888, 1136, 1208
BspQI GCTCTTC 1 cut(s) 1206
BspT107I GGYRCC 4 cut(s) 59, 147, 156, 338
BspTI CTTAAG 1 cut(s) 1301
BsrDI GCAATG 4 cut(s) 198, 219, 496, 862
BsrFI RCCGGY 1 cut(s) 153
BsrGI TGTACA 1 cut(s) 187
BsrI ACTGG 6 cut(s) 340, 342, 988, 1100, 1116, 1280
BssAI RCCGGY 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 778, 1107
BssMI GATC 9 cut(s) 132, 244, 319, 868, 880, 1141, 1213, 1291, 1307
BssNI GRCGYC 1 cut(s) 339
BssT1I CCWWGG 2 cut(s) 778, 1107
Bst4CI ACNGT 4 cut(s) 94, 310, 569, 920
Bst6I CTCTTC 3 cut(s) 400, 545, 1206
BstACI GRCGYC 1 cut(s) 339
BstAFI CTTAAG 1 cut(s) 1301
BstAPI GCANNNNNTGC 1 cut(s) 310
BstAUI TGTACA 1 cut(s) 187
BstC8I GCNNGC 1 cut(s) 155
BstDEI CTNAG 4 cut(s) 366, 437, 885, 909
BstDSI CCRYGG 2 cut(s) 778, 1107
BstENI CCTNNNNNAGG 1 cut(s) 809
BstF5I GGATG 3 cut(s) 141, 586, 771
BstFNI CGCG 1 cut(s) 1287
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 3 cut(s) 341, 1211, 1287
BstKTI GATC 9 cut(s) 135, 247, 322, 871, 883, 1144, 1216, 1294, 1310
BstMAI GTCTC 3 cut(s) 489, 613, 1308
BstMBI GATC 9 cut(s) 132, 244, 319, 868, 880, 1141, 1213, 1291, 1307
BstMCI CGRYCG 1 cut(s) 1294
BstMWI GCNNNNNNNGC 5 cut(s) 40, 259, 310, 715, 1159
BstNSI RCATGY 3 cut(s) 271, 617, 1261
BstUI CGCG 1 cut(s) 1287
BstV1I GCAGC 3 cut(s) 240, 464, 964
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
Bsu15I ATCGAT 1 cut(s) 1294
BsuI GTATCC 1 cut(s) 641
BsuRI GGCC 4 cut(s) 231, 800, 903, 1234
BsuTUI ATCGAT 1 cut(s) 1294
BtgI CCRYGG 2 cut(s) 778, 1107
BtsCI GGATG 3 cut(s) 141, 586, 771
BtsIMutI CAGTG 3 cut(s) 90, 349, 981
Cac8I GCNNGC 1 cut(s) 155
CciI TCATGA 2 cut(s) 721, 808
CfoI GCGC 3 cut(s) 341, 1211, 1287
Cfr10I RCCGGY 1 cut(s) 153
ClaI ATCGAT 1 cut(s) 1294
Csp6I GTAC 6 cut(s) 148, 188, 363, 391, 860, 1187
CviQI GTAC 6 cut(s) 148, 188, 363, 391, 860, 1187
DdeI CTNAG 4 cut(s) 366, 437, 885, 909
DinI GGCGCC 1 cut(s) 340
DpnI GATC 9 cut(s) 134, 246, 321, 870, 882, 1143, 1215, 1293, 1309
DpnII GATC 9 cut(s) 132, 244, 319, 868, 880, 1141, 1213, 1291, 1307
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 3 cut(s) 400, 545, 1206
EarI CTCTTC 3 cut(s) 400, 545, 1206
Eco130I CCWWGG 2 cut(s) 778, 1107
Eco147I AGGCCT 1 cut(s) 1234
Eco24I GRGCYC 1 cut(s) 1269
Eco57I CTGAAG 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 809
EcoT14I CCWWGG 2 cut(s) 778, 1107
EcoT38I GRGCYC 1 cut(s) 1269
EgeI GGCGCC 1 cut(s) 340
EheI GGCGCC 1 cut(s) 340
ErhI CCWWGG 2 cut(s) 778, 1107
FalI AAGNNNNNCTT 2 cut(s) 1114, 1146
FaqI GGGAC 2 cut(s) 197, 770
FauI CCCGC 1 cut(s) 1277
FbaI TGATCA 2 cut(s) 319, 868
Fnu4HI GCNGC 3 cut(s) 254, 453, 978
FokI GGATG 3 cut(s) 128, 593, 778
FriOI GRGCYC 1 cut(s) 1269
Fsp4HI GCNGC 3 cut(s) 254, 453, 978
FspBI CTAG 4 cut(s) 360, 387, 852, 1236
GlaI GCGC 3 cut(s) 340, 1210, 1286
GluI GCNGC 3 cut(s) 254, 453, 978
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 4 cut(s) 231, 800, 903, 1234
HapII CCGG 4 cut(s) 145, 154, 160, 923
HhaI GCGC 3 cut(s) 341, 1211, 1287
Hin1I GRCGYC 1 cut(s) 339
Hin6I GCGC 3 cut(s) 339, 1209, 1285
HinP1I GCGC 3 cut(s) 339, 1209, 1285
HinfI GANTC 6 cut(s) 377, 383, 654, 933, 947, 1054
HpaII CCGG 4 cut(s) 145, 154, 160, 923
HphI GGTGA 9 cut(s) 94, 124, 142, 382, 434, 559, 863, 928, 998
Hpy166II GTNNAC 3 cut(s) 188, 432, 1093
Hpy188III TCNNGA 7 cut(s) 242, 637, 722, 732, 809, 1217, 1311
Hpy8I GTNNAC 3 cut(s) 188, 432, 1093
Hpy99I CGWCG 1 cut(s) 1292
HpyAV CCTTC 4 cut(s) 97, 116, 289, 815
HpyCH4III ACNGT 4 cut(s) 94, 310, 569, 920
HpyCH4V TGCA 3 cut(s) 682, 709, 1351
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 259, 310, 715, 1159
HpyF3I CTNAG 4 cut(s) 366, 437, 885, 909
Hsp92I GRCGYC 1 cut(s) 339
HspAI GCGC 3 cut(s) 339, 1209, 1285
KasI GGCGCC 1 cut(s) 338
KpnI GGTACC 1 cut(s) 151
KroI GCCGGC 1 cut(s) 153
KroNI GCCGGC 1 cut(s) 155
Ksp22I TGATCA 2 cut(s) 319, 868
Kzo9I GATC 9 cut(s) 132, 244, 319, 868, 880, 1141, 1213, 1291, 1307
LguI GCTCTTC 1 cut(s) 1206
LmnI GCTCC 1 cut(s) 40
Lsp1109I GCAGC 3 cut(s) 240, 464, 964
LweI GCATC 1 cut(s) 630
MaeI CTAG 4 cut(s) 360, 387, 852, 1236
MaeIII GTNAC 3 cut(s) 82, 422, 563
MalI GATC 9 cut(s) 134, 246, 321, 870, 882, 1143, 1215, 1293, 1309
MboI GATC 9 cut(s) 132, 244, 319, 868, 880, 1141, 1213, 1291, 1307
MboII GAAGA 6 cut(s) 387, 562, 1158, 1193, 1238, 1244
MflI RGATCY 1 cut(s) 880
MhlI GDGCHC 2 cut(s) 315, 1269
MlsI TGGCCA 1 cut(s) 231
MluCI AATT 5 cut(s) 172, 276, 828, 1041, 1148
MluNI TGGCCA 1 cut(s) 231
Mly113I GGCGCC 1 cut(s) 339
MlyI GAGTC 1 cut(s) 1048
MmeI TCCRAC 1 cut(s) 984
Mox20I TGGCCA 1 cut(s) 231
MroNI GCCGGC 1 cut(s) 153
MroXI GAANNNNTTC 1 cut(s) 1251
MscI TGGCCA 1 cut(s) 231
MseI TTAA 5 cut(s) 264, 405, 993, 1100, 1302
MslI CAYNNNNRTG 5 cut(s) 183, 579, 687, 764, 941
Msp20I TGGCCA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 325
MspCI CTTAAG 1 cut(s) 1301
MspI CCGG 4 cut(s) 145, 154, 160, 923
MvnI CGCG 1 cut(s) 1287
MwoI GCNNNNNNNGC 5 cut(s) 40, 259, 310, 715, 1159
NaeI GCCGGC 1 cut(s) 155
NarI GGCGCC 1 cut(s) 339
NcoI CCATGG 2 cut(s) 778, 1107
NdeII GATC 9 cut(s) 132, 244, 319, 868, 880, 1141, 1213, 1291, 1307
NgoMIV GCCGGC 1 cut(s) 153
NlaIV GGNNCC 6 cut(s) 42, 61, 149, 158, 340, 882
NmuCI GTSAC 3 cut(s) 82, 422, 563
NspI RCATGY 3 cut(s) 271, 617, 1261
PagI TCATGA 2 cut(s) 721, 808
PceI AGGCCT 1 cut(s) 1234
PciI ACATGT 1 cut(s) 267
PciSI GCTCTTC 1 cut(s) 1206
PdiI GCCGGC 1 cut(s) 155
PdmI GAANNNNTTC 1 cut(s) 1251
PfeI GAWTC 5 cut(s) 377, 383, 654, 933, 947
PflMI CCANNNNNTGG 1 cut(s) 69
PkrI GCNGC 3 cut(s) 255, 454, 979
Ple19I CGATCG 1 cut(s) 1294
PleI GAGTC 1 cut(s) 1048
PluTI GGCGCC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 1048
PscI ACATGT 1 cut(s) 267
PspN4I GGNNCC 6 cut(s) 42, 61, 149, 158, 340, 882
PsuI RGATCY 1 cut(s) 880
PvuI CGATCG 1 cut(s) 1294
PvuII CAGCTG 1 cut(s) 325
RsaI GTAC 6 cut(s) 149, 189, 364, 392, 861, 1188
RsaNI GTAC 6 cut(s) 148, 188, 363, 391, 860, 1187
RseI CAYNNNNRTG 5 cut(s) 183, 579, 687, 764, 941
SapI GCTCTTC 1 cut(s) 1206
SaqAI TTAA 5 cut(s) 264, 405, 993, 1100, 1302
SatI GCNGC 3 cut(s) 254, 453, 978
Sau3AI GATC 9 cut(s) 132, 244, 319, 868, 880, 1141, 1213, 1291, 1307
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 1 cut(s) 1048
SduI GDGCHC 2 cut(s) 315, 1269
SfaNI GCATC 1 cut(s) 630
SfoI GGCGCC 1 cut(s) 340
SmiMI CAYNNNNRTG 5 cut(s) 183, 579, 687, 764, 941
SmlI CTYRAG 3 cut(s) 446, 1262, 1301
SmoI CTYRAG 3 cut(s) 446, 1262, 1301
SpeI ACTAGT 1 cut(s) 359
Sse9I AATT 5 cut(s) 172, 276, 828, 1041, 1148
SseBI AGGCCT 1 cut(s) 1234
SsiI CCGC 4 cut(s) 151, 545, 1066, 1270
SspDI GGCGCC 1 cut(s) 338
SspI AATATT 1 cut(s) 535
SspMI CTAG 4 cut(s) 360, 387, 852, 1236
StuI AGGCCT 1 cut(s) 1234
StyI CCWWGG 2 cut(s) 778, 1107
TaaI ACNGT 4 cut(s) 94, 310, 569, 920
TaqI TCGA 2 cut(s) 657, 1294
TasI AATT 5 cut(s) 172, 276, 828, 1041, 1148
TatI WGTACW 3 cut(s) 187, 362, 859
TfiI GAWTC 5 cut(s) 377, 383, 654, 933, 947
Tru1I TTAA 5 cut(s) 264, 405, 993, 1100, 1302
Tru9I TTAA 5 cut(s) 264, 405, 993, 1100, 1302
TscAI CASTG 3 cut(s) 97, 349, 988
TseFI GTSAC 3 cut(s) 82, 422, 563
TseI GCWGC 3 cut(s) 253, 452, 977
Tsp45I GTSAC 3 cut(s) 82, 422, 563
TspDTI ATGAA 6 cut(s) 299, 577, 710, 738, 782, 797
TspRI CASTG 3 cut(s) 97, 349, 988
Van91I CCANNNNNTGG 1 cut(s) 69
Vha464I CTTAAG 1 cut(s) 1301
XagI CCTNNNNNAGG 1 cut(s) 809
XapI RAATTY 1 cut(s) 828
XceI RCATGY 3 cut(s) 271, 617, 1261
XmnI GAANNNNTTC 1 cut(s) 1251
XspI CTAG 4 cut(s) 360, 387, 852, 1236
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.