Rh1DG418600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0017368
Physical Location & Seq
Reverse (-)
63379326 .. 63380145
820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG418600.1

Sequence Viewer

Length: 720 bp
ATGACTCTGCTCTCTGATAGGCTTCTTCATCTCTCTGAAACCATGTCTTCCACTACATTATCTCTGAAGCAAATGCTCATGAAGCCAACCTCATTGTTTGGTGCCAAGTTATGGGTTCTGCTTGTGACCTTCACTGTTCTATTCACCCTTCTGGTGATTGTCTTTGTCTTGGTGATCTATATCATCCGGTACCGCCGGCACCGGAAGTCCTACAATTCCCATTTGTGTGTACAAAATCCCATTGCTTCCAAAGTCCCTCACATTGCTTATGGCCACTCATCTCTTGATCGGAGGCTGCTTTCGCTTAACATGTCCAAAATTGAGATGAACAATGGGAAGGAGAGGCAAACTGTGCTCTCTGATCAGCTGTCCTCTACTGGCGCCAGTGGGATAACCCCCACTAGTACTAAGGTGAGTGAATCGGAATCTAGGTACTCTTCGGTGGTTAAAGATGTGTGGAGGGGTGACAAGTTTACTCTAAGGGAACTTGAGGCAGCAACAAATGGGTTTGGTAGAGAAAATCTGATTGGCAATGGAGACTATGGCATTGTATATCATGGTATTCTGTTTGATAATATTCGTGTGGCGGTGAAGAGGCTTGTGAGTGACAGTTGCCATGAGGATGACTTCATAGCAGAAATGGAGGCGATTGGGCATGTGAGACACAAAAATCTTGTCAAGATGCTTGGATACAGAATCGAAAGAGCTTACAGATTTTGA

Protein Analysis

239

Amino Acids

27.17

Weight (kDa)

9.61

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 174 - 233 5e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017368)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g30240
malus_domestica MD01G1208500.v1.1
prunus_persica Prupe.2G301100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0378371
rosa_laevigata RLG00000026440
rosa_multiflora Rmu_sc0013545.1_g000010
rosa_roxburghii Rroxscaffold_4G00280500
rosa_rugosa Rorug01G0408300
rosa_samantha Rh1AG429800 Rh1BG387500 Rh1CG401000 Rh1DG418600
rosa_wichuraiana Rw1G037610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 189
AccB1I GGYRCC 4 cut(s) 101, 189, 198, 380
AccB7I CCANNNNNTGG 1 cut(s) 111
AciI CCGC 2 cut(s) 193, 587
AcoI YGGCCR 1 cut(s) 271
AcuI CTGAAG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 4 cut(s) 191, 231, 406, 434
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 309
AhlI ACTAGT 1 cut(s) 401
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AluBI AGCT 2 cut(s) 367, 707
AluI AGCT 2 cut(s) 367, 707
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 531, 655
AoxI GGCC 1 cut(s) 271
ApeKI GCWGC 2 cut(s) 295, 494
ArsI GACNNNNNNTTYG 2 cut(s) 660, 692
Asp718I GGTACC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 383
AsuHPI GGTGA 6 cut(s) 136, 166, 184, 424, 476, 601
BalI TGGCCA 1 cut(s) 273
BanI GGYRCC 4 cut(s) 101, 189, 198, 380
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 282, 506
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 2 cut(s) 531, 655
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 402, 429
BfoI RGCGCY 1 cut(s) 384
BfuI GTATCC 1 cut(s) 683
BisI GCNGC 2 cut(s) 296, 495
BlsI GCNGC 2 cut(s) 297, 496
BmcAI AGTACT 1 cut(s) 406
BmiI GGNNCC 4 cut(s) 103, 191, 200, 382
BmsI GCATC 1 cut(s) 672
BpiI GAAGAC 1 cut(s) 39
BpuEI CTTGAG 1 cut(s) 509
BsaBI GATNNNNATC 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 381
BsaWI WCCGGW 2 cut(s) 186, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 195
Bse1I ACTGG 2 cut(s) 382, 384
Bse3DI GCAATG 3 cut(s) 240, 261, 538
Bse8I GATNNNNATC 1 cut(s) 179
BseGI GGATG 2 cut(s) 183, 628
BseJI GATNNNNATC 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 3 cut(s) 240, 261, 538
BseNI ACTGG 2 cut(s) 382, 384
BseXI GCAGC 2 cut(s) 282, 506
BshFI GGCC 1 cut(s) 273
BshNI GGYRCC 4 cut(s) 101, 189, 198, 380
BsiHKAI GWGCWC 1 cut(s) 357
BsiSI CCGG 3 cut(s) 187, 196, 202
BslFI GGGAC 1 cut(s) 239
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 531, 655
BsmFI GGGAC 1 cut(s) 239
BsnI GGCC 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 357
Bsp1407I TGTACA 1 cut(s) 229
Bsp143I GATC 3 cut(s) 174, 286, 361
BspACI CCGC 2 cut(s) 193, 587
BspANI GGCC 1 cut(s) 273
BspHI TCATGA 1 cut(s) 78
BspLI GGNNCC 4 cut(s) 103, 191, 200, 382
BspT107I GGYRCC 4 cut(s) 101, 189, 198, 380
BsrDI GCAATG 3 cut(s) 240, 261, 538
BsrFI RCCGGY 1 cut(s) 195
BsrGI TGTACA 1 cut(s) 229
BsrI ACTGG 2 cut(s) 382, 384
BssAI RCCGGY 1 cut(s) 195
BssMI GATC 3 cut(s) 174, 286, 361
BssNI GRCGYC 1 cut(s) 381
Bst4CI ACNGT 3 cut(s) 136, 352, 611
Bst6I CTCTTC 2 cut(s) 442, 587
BstACI GRCGYC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 352
BstAUI TGTACA 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 197
BstDEI CTNAG 2 cut(s) 408, 479
BstF5I GGATG 2 cut(s) 183, 628
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 3 cut(s) 177, 289, 364
BstMAI GTCTC 2 cut(s) 531, 655
BstMBI GATC 3 cut(s) 174, 286, 361
BstMWI GCNNNNNNNGC 3 cut(s) 82, 301, 352
BstNSI RCATGY 2 cut(s) 313, 659
BstV1I GCAGC 2 cut(s) 282, 506
BstV2I GAAGAC 1 cut(s) 39
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 1 cut(s) 273
BtsCI GGATG 2 cut(s) 183, 628
BtsIMutI CAGTG 2 cut(s) 132, 391
Cac8I GCNNGC 1 cut(s) 197
CciI TCATGA 1 cut(s) 78
CfoI GCGC 1 cut(s) 383
Cfr10I RCCGGY 1 cut(s) 195
Csp6I GTAC 4 cut(s) 190, 230, 405, 433
CviAII CATG 6 cut(s) 43, 79, 310, 557, 617, 656
CviJI RGCY 7 cut(s) 22, 85, 273, 295, 367, 598, 707
CviKI_1 RGCY 7 cut(s) 22, 85, 273, 295, 367, 598, 707
CviQI GTAC 4 cut(s) 190, 230, 405, 433
DdeI CTNAG 2 cut(s) 408, 479
DinI GGCGCC 1 cut(s) 382
DpnI GATC 3 cut(s) 176, 288, 363
DpnII GATC 3 cut(s) 174, 286, 361
EaeI YGGCCR 1 cut(s) 271
Eam1104I CTCTTC 2 cut(s) 442, 587
EarI CTCTTC 2 cut(s) 442, 587
Eco57I CTGAAG 1 cut(s) 86
EgeI GGCGCC 1 cut(s) 382
EheI GGCGCC 1 cut(s) 382
FaeI CATG 6 cut(s) 46, 82, 313, 560, 620, 659
FaqI GGGAC 1 cut(s) 239
FatI CATG 6 cut(s) 42, 78, 309, 556, 616, 655
FbaI TGATCA 1 cut(s) 361
Fnu4HI GCNGC 2 cut(s) 296, 495
FokI GGATG 2 cut(s) 170, 635
Fsp4HI GCNGC 2 cut(s) 296, 495
FspBI CTAG 2 cut(s) 402, 429
GlaI GCGC 1 cut(s) 382
GluI GCNGC 2 cut(s) 296, 495
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 1 cut(s) 273
HapII CCGG 3 cut(s) 187, 196, 202
HhaI GCGC 1 cut(s) 383
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 6 cut(s) 46, 82, 313, 560, 620, 659
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HinfI GANTC 4 cut(s) 4, 419, 425, 696
HpaII CCGG 3 cut(s) 187, 196, 202
HphI GGTGA 6 cut(s) 136, 166, 184, 424, 476, 601
Hpy166II GTNNAC 2 cut(s) 230, 474
Hpy188I TCNGA 7 cut(s) 16, 37, 66, 291, 361, 424, 525
Hpy188III TCNNGA 3 cut(s) 79, 284, 679
Hpy8I GTNNAC 2 cut(s) 230, 474
HpyAV CCTTC 3 cut(s) 139, 158, 331
HpyCH4III ACNGT 3 cut(s) 136, 352, 611
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 301, 352
HpyF3I CTNAG 2 cut(s) 408, 479
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 6 cut(s) 46, 82, 313, 560, 620, 659
HspAI GCGC 1 cut(s) 381
KasI GGCGCC 1 cut(s) 380
KpnI GGTACC 1 cut(s) 193
KroI GCCGGC 1 cut(s) 195
KroNI GCCGGC 1 cut(s) 197
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 3 cut(s) 174, 286, 361
LpnPI CCDG 6 cut(s) 137, 200, 209, 215, 363, 397
Lsp1109I GCAGC 2 cut(s) 282, 506
LweI GCATC 1 cut(s) 672
MaeI CTAG 2 cut(s) 402, 429
MaeIII GTNAC 3 cut(s) 124, 464, 605
MalI GATC 3 cut(s) 176, 288, 363
MboI GATC 3 cut(s) 174, 286, 361
MboII GAAGA 4 cut(s) 17, 39, 429, 604
MhlI GDGCHC 1 cut(s) 357
MlsI TGGCCA 1 cut(s) 273
MluCI AATT 2 cut(s) 214, 318
MluNI TGGCCA 1 cut(s) 273
Mly113I GGCGCC 1 cut(s) 381
Mox20I TGGCCA 1 cut(s) 273
MroNI GCCGGC 1 cut(s) 195
MscI TGGCCA 1 cut(s) 273
MseI TTAA 2 cut(s) 306, 447
MslI CAYNNNNRTG 2 cut(s) 225, 621
Msp20I TGGCCA 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 367
MspI CCGG 3 cut(s) 187, 196, 202
MwoI GCNNNNNNNGC 3 cut(s) 82, 301, 352
NaeI GCCGGC 1 cut(s) 197
NarI GGCGCC 1 cut(s) 381
NdeII GATC 3 cut(s) 174, 286, 361
NgoMIV GCCGGC 1 cut(s) 195
NlaIII CATG 6 cut(s) 46, 82, 313, 560, 620, 659
NlaIV GGNNCC 4 cut(s) 103, 191, 200, 382
NmuCI GTSAC 3 cut(s) 124, 464, 605
NspI RCATGY 2 cut(s) 313, 659
PagI TCATGA 1 cut(s) 78
PciI ACATGT 1 cut(s) 309
PdiI GCCGGC 1 cut(s) 197
PfeI GAWTC 3 cut(s) 419, 425, 696
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 2 cut(s) 297, 496
PluTI GGCGCC 1 cut(s) 384
PscI ACATGT 1 cut(s) 309
PspN4I GGNNCC 4 cut(s) 103, 191, 200, 382
PvuII CAGCTG 1 cut(s) 367
RsaI GTAC 4 cut(s) 191, 231, 406, 434
RsaNI GTAC 4 cut(s) 190, 230, 405, 433
RseI CAYNNNNRTG 2 cut(s) 225, 621
SaqAI TTAA 2 cut(s) 306, 447
SatI GCNGC 2 cut(s) 296, 495
Sau3AI GATC 3 cut(s) 174, 286, 361
ScaI AGTACT 1 cut(s) 406
SduI GDGCHC 1 cut(s) 357
SetI ASST 6 cut(s) 92, 131, 369, 414, 434, 709
SfaNI GCATC 1 cut(s) 672
SfoI GGCGCC 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 225, 621
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 2 cut(s) 214, 318
SsiI CCGC 2 cut(s) 193, 587
SspDI GGCGCC 1 cut(s) 380
SspI AATATT 1 cut(s) 577
SspMI CTAG 2 cut(s) 402, 429
TaaI ACNGT 3 cut(s) 136, 352, 611
TaqI TCGA 1 cut(s) 699
TasI AATT 2 cut(s) 214, 318
TatI WGTACW 2 cut(s) 229, 404
TfiI GAWTC 3 cut(s) 419, 425, 696
Tru1I TTAA 2 cut(s) 306, 447
Tru9I TTAA 2 cut(s) 306, 447
TscAI CASTG 2 cut(s) 139, 391
TseFI GTSAC 3 cut(s) 124, 464, 605
TseI GCWGC 2 cut(s) 295, 494
Tsp45I GTSAC 3 cut(s) 124, 464, 605
TspDTI ATGAA 4 cut(s) 17, 95, 341, 619
TspRI CASTG 2 cut(s) 139, 391
Van91I CCANNNNNTGG 1 cut(s) 111
XceI RCATGY 2 cut(s) 313, 659
XspI CTAG 2 cut(s) 402, 429
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.