Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017368

Physical Location & Seq

Genomic Coordinates Reverse (-)

66715235 .. 66715576

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG401000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGTCCAAAATTGAGATGAACAATGGGAAGGAGAGGCAAACTGTGCTCTCTGATCAGCTGTCCTCTACTGGCGCCAGTGGGATAACCCCCACTAGTACTAAGGTGAGTGAATCGGAATCTAGGTACTCTTCGGTGGTTAAAGATGTGTGGAGGGGTGACAAGTTTACTCTAAGGGAACTTGAGGCAGCAACAAATGGGTTTGGTAGAGAAAATCTGATTGGCAATGGAGACTATGGCATTGTATATCATGGTATTCTGTTTGATAATATTCGTGTGGCGGTGAAGAGGCTTGTGAGTGACAGGTACCTATTTATTCACTCGCTCTATTTTGGTGAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

113

Amino Acids

12.71

Weight (kDa)

6.73

Isoelectric Point (pI)

23.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30240
malus_domestica	MD01G1208500.v1.1
prunus_persica	Prupe.2G301100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378371
rosa_laevigata	RLG00000026440
rosa_multiflora	Rmu_sc0013545.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280500
rosa_rugosa	Rorug01G0408300
rosa_samantha	Rh1AG429800 Rh1BG387500 Rh1CG401000 Rh1DG418600
rosa_wichuraiana	Rw1G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	303
AccB1I	GGYRCC	2 cut(s)	71, 303
AciI	CCGC	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	97, 125, 305
AhlI	ACTAGT	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	185
Asp718I	GGTACC	1 cut(s)	303
AspLEI	GCGC	1 cut(s)	74
AsuHPI	GGTGA	3 cut(s)	115, 167, 292
BanI	GGYRCC	2 cut(s)	71, 303
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	197
BclI	TGATCA	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	222
BcuI	ACTAGT	1 cut(s)	92
BfaI	CTAG	2 cut(s)	93, 120
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
BmcAI	AGTACT	1 cut(s)	97
BmiI	GGNNCC	2 cut(s)	73, 305
BpuEI	CTTGAG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	73, 75
Bse3DI	GCAATG	1 cut(s)	229
BseMI	GCAATG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	73, 75
BseXI	GCAGC	1 cut(s)	197
BshNI	GGYRCC	2 cut(s)	71, 303
BsiHKAI	GWGCWC	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	1 cut(s)	278
BspLI	GGNNCC	2 cut(s)	73, 305
BspT107I	GGYRCC	2 cut(s)	71, 303
BsrDI	GCAATG	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	73, 75
BssMI	GATC	1 cut(s)	52
BssNI	GRCGYC	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	133, 278
BstACI	GRCGYC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstDEI	CTNAG	2 cut(s)	99, 170
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	74
BstKTI	GATC	1 cut(s)	55
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	197
BtsIMutI	CAGTG	1 cut(s)	82
CfoI	GCGC	1 cut(s)	74
Csp6I	GTAC	3 cut(s)	96, 124, 304
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	2 cut(s)	58, 289
CviKI_1	RGCY	2 cut(s)	58, 289
CviQI	GTAC	3 cut(s)	96, 124, 304
DdeI	CTNAG	2 cut(s)	99, 170
DinI	GGCGCC	1 cut(s)	73
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	133, 278
EarI	CTCTTC	2 cut(s)	133, 278
EgeI	GGCGCC	1 cut(s)	73
EheI	GGCGCC	1 cut(s)	73
FaeI	CATG	1 cut(s)	251
FaiI	YATR	3 cut(s)	234, 244, 249
FatI	CATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	52
Fnu4HI	GCNGC	1 cut(s)	186
Fsp4HI	GCNGC	1 cut(s)	186
FspBI	CTAG	2 cut(s)	93, 120
GlaI	GCGC	1 cut(s)	73
GluI	GCNGC	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	75
HhaI	GCGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	72
HinP1I	GCGC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	110, 116
HphI	GGTGA	3 cut(s)	115, 167, 292
Hpy166II	GTNNAC	1 cut(s)	165
Hpy188I	TCNGA	3 cut(s)	52, 115, 216
Hpy8I	GTNNAC	1 cut(s)	165
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	1 cut(s)	43
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	2 cut(s)	99, 170
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	1 cut(s)	72
KasI	GGCGCC	1 cut(s)	71
KpnI	GGTACC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	52
LpnPI	CCDG	3 cut(s)	54, 88, 286
Lsp1109I	GCAGC	1 cut(s)	197
MaeI	CTAG	2 cut(s)	93, 120
MaeIII	GTNAC	2 cut(s)	155, 296
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MboII	GAAGA	2 cut(s)	120, 295
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	9
Mly113I	GGCGCC	1 cut(s)	72
MnlI	CCTC	5 cut(s)	27, 73, 144, 175, 279
MseI	TTAA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	72
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	2 cut(s)	73, 305
NmuCI	GTSAC	2 cut(s)	155, 296
PfeI	GAWTC	2 cut(s)	110, 116
PkrI	GCNGC	1 cut(s)	187
PluTI	GGCGCC	1 cut(s)	75
PspN4I	GGNNCC	2 cut(s)	73, 305
PvuII	CAGCTG	1 cut(s)	58
RsaI	GTAC	3 cut(s)	97, 125, 305
RsaNI	GTAC	3 cut(s)	96, 124, 304
SaqAI	TTAA	1 cut(s)	138
SatI	GCNGC	1 cut(s)	186
Sau3AI	GATC	1 cut(s)	52
ScaI	AGTACT	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	5 cut(s)	60, 105, 125, 305, 309
SfoI	GGCGCC	1 cut(s)	73
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SpeI	ACTAGT	1 cut(s)	92
Sse9I	AATT	1 cut(s)	9
SsiI	CCGC	1 cut(s)	278
SspDI	GGCGCC	1 cut(s)	71
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	2 cut(s)	93, 120
TaaI	ACNGT	1 cut(s)	43
TasI	AATT	1 cut(s)	9
TatI	WGTACW	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	110, 116
Tru1I	TTAA	1 cut(s)	138
Tru9I	TTAA	1 cut(s)	138
TscAI	CASTG	1 cut(s)	82
TseFI	GTSAC	2 cut(s)	155, 296
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	2 cut(s)	155, 296
TspDTI	ATGAA	1 cut(s)	32
TspRI	CASTG	1 cut(s)	82
XspI	CTAG	2 cut(s)	93, 120
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.