Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017368

Physical Location & Seq

Genomic Coordinates Reverse (-)

51469715 .. 51472173

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG387500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGACTCTGCTCTCTGATAGGCTTCTTCATCTCTCTGAAACCATGTCTTCCACTACATTATCTCTGAAGCAAATGCTCATGAAGCCAACCTCATTGTTTGGTGCCAAGTTATGGGTTCTGCTTGTGACCTTCACTGTTCTATTCACCCTTCTGGTGATTGTCTTTGTCTTGGTGATCTATATCATCCGGTACCGCCGGCACCGGAAGTCCTACAATTCCCATTTGTGTGTACAAAATCCCATTGCTTCCAAAGTCCCTCACATTGCTTATGGCCACTCATCTCTTGATCGGAGGCTGCTTTCGCTTAACATGTCCAAAATTGAGATGAACAATGGGAAGGAGAGGCAAACTGTGCTCTCTGATCAGCTGTCCTCTACTGGCGCCAGTGGGATAACCCCCACTAGTACTAAGGTGAGTGAATCGGAATCTAGGTACTCTTCGGTGGTTAAAGATGTGTGGAGGGGTGACAAGTTTACTCTAAGGGAACTTGAGGCAGCAACAAATGGGTTTGGTAGAGAAAATCTGATTGGCAATGGAGACTATGGCATTGTATATCATGGTATTCTGTTTGATAATATTCGTGTGGCGGTGAAGAGGCTTGTGAGTGACAGTTGCCATGAGGATGACTTCATAGCAGAAATGGAGGCGATTGGGCATGTGAGACACAAAAATCTTGTCAAGATGCTTGGATACAGAATCGAAAGAGCTTACAGATTGCTTGTGCATGAGTATGTAGATAACAAAAGTCTGCACCATTGGCTTCATGAATGTTCAAGAAGTGTCAGCCCTCTAACATGGGATATTCGGATGAAAATAATCCATGGAATAGCAAAAGGTTATGTTGCCCCAGAATATGCTGCCACTGGTGATTTTAATGAGAAGTCGGATGTTTATAGCTTCGGAGTGTTGATTATGGAGATAATTTCTGGCAGGACTCCTATTGACCGCACTCAACACCAACCATATCTGGTAGACTGGTTAAAGTCCATGGTTGCCAGTCAAAGAACTGCTTATGTAGTTGATCCTAAATTGCCAGAGAAGCCATCTTCAAAAGAACTCAAAAGGGTTCTTCTGGTTGCTCTTCGTTGCGCTGATCCTGATTTAGAAGATAGGCCTAGAATGGGAGAAGTTCTTCACATGCTTGAGCCCCGCGACTTGCTAATGCTCGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

390

Amino Acids

44.5

Weight (kDa)

8.96

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	172 - 259	1.1e-10	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	174 - 279	2.9e-14	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	278 - 379	7.7e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	280 - 380	4.5e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30240
malus_domestica	MD01G1208500.v1.1
prunus_persica	Prupe.2G301100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378371
rosa_laevigata	RLG00000026440
rosa_multiflora	Rmu_sc0013545.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280500
rosa_rugosa	Rorug01G0408300
rosa_samantha	Rh1AG429800 Rh1BG387500 Rh1CG401000 Rh1DG418600
rosa_wichuraiana	Rw1G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	189
AccB1I	GGYRCC	4 cut(s)	101, 189, 198, 380
AccB7I	CCANNNNNTGG	1 cut(s)	111
AccI	GTMKAC	1 cut(s)	972
AccII	CGCG	1 cut(s)	1152
AciI	CCGC	4 cut(s)	193, 587, 946, 1150
AclWI	GGATC	2 cut(s)	1016, 1088
AcoI	YGGCCR	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	4 cut(s)	191, 231, 406, 434
AfiI	CCNNNNNNNGG	2 cut(s)	111, 1121
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	774, 1050
AhlI	ACTAGT	1 cut(s)	401
AjuI	GAANNNNNNNTTGG	2 cut(s)	510, 542
AluBI	AGCT	3 cut(s)	367, 707, 897
AluI	AGCT	3 cut(s)	367, 707, 897
Alw21I	GWGCWC	1 cut(s)	357
Alw26I	GTCTC	2 cut(s)	531, 655
AlwI	GGATC	2 cut(s)	1016, 1088
AoxI	GGCC	2 cut(s)	271, 1112
ApeKI	GCWGC	3 cut(s)	295, 494, 857
ArsI	GACNNNNNNTTYG	2 cut(s)	660, 692
Asp700I	GAANNNNTTC	1 cut(s)	1131
Asp718I	GGTACC	1 cut(s)	189
AspLEI	GCGC	2 cut(s)	383, 1091
AsuHPI	GGTGA	7 cut(s)	136, 166, 184, 424, 476, 601, 878
BalI	TGGCCA	1 cut(s)	273
BanI	GGYRCC	4 cut(s)	101, 189, 198, 380
BanII	GRGCYC	1 cut(s)	1149
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	282, 506, 844
BccI	CCATC	1 cut(s)	1051
BciVI	GTATCC	1 cut(s)	683
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	531, 655
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	3 cut(s)	402, 429, 1116
BfoI	RGCGCY	1 cut(s)	384
BfuI	GTATCC	1 cut(s)	683
BisI	GCNGC	3 cut(s)	296, 495, 858
BlsI	GCNGC	3 cut(s)	297, 496, 859
BmcAI	AGTACT	1 cut(s)	406
BmiI	GGNNCC	4 cut(s)	103, 191, 200, 382
BmsI	GCATC	1 cut(s)	672
BpiI	GAAGAC	1 cut(s)	39
BpuEI	CTTGAG	2 cut(s)	509, 1163
BsaBI	GATNNNNATC	1 cut(s)	179
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	820, 987
BsaWI	WCCGGW	2 cut(s)	186, 201
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 1121
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	5 cut(s)	382, 384, 868, 980, 996
Bse3DI	GCAATG	3 cut(s)	240, 261, 538
Bse8I	GATNNNNATC	1 cut(s)	179
BseDI	CCNNGG	2 cut(s)	820, 987
BseGI	GGATG	4 cut(s)	183, 628, 813, 892
BseJI	GATNNNNATC	1 cut(s)	179
BseLI	CCNNNNNNNGG	2 cut(s)	111, 1121
BseMI	GCAATG	3 cut(s)	240, 261, 538
BseNI	ACTGG	5 cut(s)	382, 384, 868, 980, 996
BseXI	GCAGC	3 cut(s)	282, 506, 844
BsgI	GTGCAG	1 cut(s)	734
Bsh1236I	CGCG	1 cut(s)	1152
BshFI	GGCC	2 cut(s)	273, 1114
BshNI	GGYRCC	4 cut(s)	101, 189, 198, 380
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	187, 196, 202
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	111, 1121
BsmAI	GTCTC	2 cut(s)	531, 655
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	2 cut(s)	273, 1114
Bsp1286I	GDGCHC	2 cut(s)	357, 1149
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	5 cut(s)	174, 286, 361, 1021, 1093
Bsp19I	CCATGG	2 cut(s)	820, 987
BspACI	CCGC	4 cut(s)	193, 587, 946, 1150
BspANI	GGCC	2 cut(s)	273, 1114
BspFNI	CGCG	1 cut(s)	1152
BspHI	TCATGA	2 cut(s)	78, 763
BspLI	GGNNCC	4 cut(s)	103, 191, 200, 382
BspPI	GGATC	2 cut(s)	1016, 1088
BspQI	GCTCTTC	1 cut(s)	1086
BspT107I	GGYRCC	4 cut(s)	101, 189, 198, 380
BsrDI	GCAATG	3 cut(s)	240, 261, 538
BsrFI	RCCGGY	1 cut(s)	195
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	5 cut(s)	382, 384, 868, 980, 996
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	820, 987
BssMI	GATC	5 cut(s)	174, 286, 361, 1021, 1093
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	820, 987
Bst4CI	ACNGT	3 cut(s)	136, 352, 611
Bst6I	CTCTTC	3 cut(s)	442, 587, 1086
BstACI	GRCGYC	1 cut(s)	381
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstAUI	TGTACA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	2 cut(s)	408, 479
BstDSI	CCRYGG	2 cut(s)	820, 987
BstF5I	GGATG	4 cut(s)	183, 628, 813, 892
BstFNI	CGCG	1 cut(s)	1152
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	2 cut(s)	383, 1091
BstKTI	GATC	5 cut(s)	177, 289, 364, 1024, 1096
BstMAI	GTCTC	2 cut(s)	531, 655
BstMBI	GATC	5 cut(s)	174, 286, 361, 1021, 1093
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 301, 352, 757, 1039
BstNSI	RCATGY	3 cut(s)	313, 659, 1141
BstUI	CGCG	1 cut(s)	1152
BstV1I	GCAGC	3 cut(s)	282, 506, 844
BstV2I	GAAGAC	1 cut(s)	39
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	273, 1114
BtgI	CCRYGG	2 cut(s)	820, 987
BtsCI	GGATG	4 cut(s)	183, 628, 813, 892
BtsIMutI	CAGTG	3 cut(s)	132, 391, 861
Cac8I	GCNNGC	1 cut(s)	197
CciI	TCATGA	2 cut(s)	78, 763
CfoI	GCGC	2 cut(s)	383, 1091
Cfr10I	RCCGGY	1 cut(s)	195
Csp6I	GTAC	4 cut(s)	190, 230, 405, 433
CviQI	GTAC	4 cut(s)	190, 230, 405, 433
DdeI	CTNAG	2 cut(s)	408, 479
DinI	GGCGCC	1 cut(s)	382
DpnI	GATC	5 cut(s)	176, 288, 363, 1023, 1095
DpnII	GATC	5 cut(s)	174, 286, 361, 1021, 1093
EaeI	YGGCCR	1 cut(s)	271
Eam1104I	CTCTTC	3 cut(s)	442, 587, 1086
EarI	CTCTTC	3 cut(s)	442, 587, 1086
Eco130I	CCWWGG	2 cut(s)	820, 987
Eco147I	AGGCCT	1 cut(s)	1114
Eco24I	GRGCYC	1 cut(s)	1149
Eco57I	CTGAAG	1 cut(s)	86
EcoT14I	CCWWGG	2 cut(s)	820, 987
EcoT38I	GRGCYC	1 cut(s)	1149
EgeI	GGCGCC	1 cut(s)	382
EheI	GGCGCC	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	820, 987
FalI	AAGNNNNNCTT	2 cut(s)	994, 1026
FaqI	GGGAC	1 cut(s)	239
FauI	CCCGC	1 cut(s)	1157
FbaI	TGATCA	1 cut(s)	361
FblI	GTMKAC	1 cut(s)	972
Fnu4HI	GCNGC	3 cut(s)	296, 495, 858
FokI	GGATG	4 cut(s)	170, 635, 820, 899
FriOI	GRGCYC	1 cut(s)	1149
Fsp4HI	GCNGC	3 cut(s)	296, 495, 858
FspBI	CTAG	3 cut(s)	402, 429, 1116
GlaI	GCGC	2 cut(s)	382, 1090
GluI	GCNGC	3 cut(s)	296, 495, 858
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	2 cut(s)	273, 1114
HapII	CCGG	3 cut(s)	187, 196, 202
HhaI	GCGC	2 cut(s)	383, 1091
Hin1I	GRCGYC	1 cut(s)	381
Hin6I	GCGC	2 cut(s)	381, 1089
HinP1I	GCGC	2 cut(s)	381, 1089
HinfI	GANTC	5 cut(s)	4, 419, 425, 696, 934
HpaII	CCGG	3 cut(s)	187, 196, 202
HphI	GGTGA	7 cut(s)	136, 166, 184, 424, 476, 601, 878
Hpy166II	GTNNAC	3 cut(s)	230, 474, 973
Hpy188III	TCNNGA	6 cut(s)	79, 284, 679, 764, 774, 1097
Hpy8I	GTNNAC	3 cut(s)	230, 474, 973
HpyAV	CCTTC	3 cut(s)	139, 158, 331
HpyCH4III	ACNGT	3 cut(s)	136, 352, 611
HpyCH4V	TGCA	2 cut(s)	724, 751
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 301, 352, 757, 1039
HpyF3I	CTNAG	2 cut(s)	408, 479
Hsp92I	GRCGYC	1 cut(s)	381
HspAI	GCGC	2 cut(s)	381, 1089
KasI	GGCGCC	1 cut(s)	380
KpnI	GGTACC	1 cut(s)	193
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	5 cut(s)	174, 286, 361, 1021, 1093
LguI	GCTCTTC	1 cut(s)	1086
Lsp1109I	GCAGC	3 cut(s)	282, 506, 844
LweI	GCATC	1 cut(s)	672
MaeI	CTAG	3 cut(s)	402, 429, 1116
MaeIII	GTNAC	3 cut(s)	124, 464, 605
MalI	GATC	5 cut(s)	176, 288, 363, 1023, 1095
MboI	GATC	5 cut(s)	174, 286, 361, 1021, 1093
MboII	GAAGA	9 cut(s)	17, 39, 429, 604, 1038, 1061, 1073, 1118, 1124
MhlI	GDGCHC	2 cut(s)	357, 1149
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	4 cut(s)	214, 318, 921, 1028
MluNI	TGGCCA	1 cut(s)	273
Mly113I	GGCGCC	1 cut(s)	381
MlyI	GAGTC	1 cut(s)	928
MmeI	TCCRAC	1 cut(s)	864
Mox20I	TGGCCA	1 cut(s)	273
MroNI	GCCGGC	1 cut(s)	195
MroXI	GAANNNNTTC	1 cut(s)	1131
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	4 cut(s)	306, 447, 873, 980
MslI	CAYNNNNRTG	3 cut(s)	225, 621, 729
Msp20I	TGGCCA	1 cut(s)	273
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	3 cut(s)	187, 196, 202
MvnI	CGCG	1 cut(s)	1152
MwoI	GCNNNNNNNGC	5 cut(s)	82, 301, 352, 757, 1039
NaeI	GCCGGC	1 cut(s)	197
NarI	GGCGCC	1 cut(s)	381
NcoI	CCATGG	2 cut(s)	820, 987
NdeII	GATC	5 cut(s)	174, 286, 361, 1021, 1093
NgoMIV	GCCGGC	1 cut(s)	195
NlaIV	GGNNCC	4 cut(s)	103, 191, 200, 382
NmuCI	GTSAC	3 cut(s)	124, 464, 605
NspI	RCATGY	3 cut(s)	313, 659, 1141
PagI	TCATGA	2 cut(s)	78, 763
PceI	AGGCCT	1 cut(s)	1114
PciI	ACATGT	1 cut(s)	309
PciSI	GCTCTTC	1 cut(s)	1086
PdiI	GCCGGC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	1131
PfeI	GAWTC	3 cut(s)	419, 425, 696
PflMI	CCANNNNNTGG	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	297, 496, 859
PleI	GAGTC	1 cut(s)	928
PluTI	GGCGCC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	928
PscI	ACATGT	1 cut(s)	309
PspN4I	GGNNCC	4 cut(s)	103, 191, 200, 382
PvuII	CAGCTG	1 cut(s)	367
RsaI	GTAC	4 cut(s)	191, 231, 406, 434
RsaNI	GTAC	4 cut(s)	190, 230, 405, 433
RseI	CAYNNNNRTG	3 cut(s)	225, 621, 729
SapI	GCTCTTC	1 cut(s)	1086
SaqAI	TTAA	4 cut(s)	306, 447, 873, 980
SatI	GCNGC	3 cut(s)	296, 495, 858
Sau3AI	GATC	5 cut(s)	174, 286, 361, 1021, 1093
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	1 cut(s)	928
SduI	GDGCHC	2 cut(s)	357, 1149
SetI	ASST	8 cut(s)	92, 131, 369, 414, 434, 709, 838, 899
SfaNI	GCATC	1 cut(s)	672
SfoI	GGCGCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	3 cut(s)	225, 621, 729
SmlI	CTYRAG	2 cut(s)	488, 1142
SmoI	CTYRAG	2 cut(s)	488, 1142
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	4 cut(s)	214, 318, 921, 1028
SseBI	AGGCCT	1 cut(s)	1114
SsiI	CCGC	4 cut(s)	193, 587, 946, 1150
SspDI	GGCGCC	1 cut(s)	380
SspI	AATATT	1 cut(s)	577
SspMI	CTAG	3 cut(s)	402, 429, 1116
StuI	AGGCCT	1 cut(s)	1114
StyI	CCWWGG	2 cut(s)	820, 987
TaaI	ACNGT	3 cut(s)	136, 352, 611
TaqI	TCGA	2 cut(s)	699, 1167
TasI	AATT	4 cut(s)	214, 318, 921, 1028
TatI	WGTACW	2 cut(s)	229, 404
TfiI	GAWTC	3 cut(s)	419, 425, 696
Tru1I	TTAA	4 cut(s)	306, 447, 873, 980
Tru9I	TTAA	4 cut(s)	306, 447, 873, 980
TscAI	CASTG	3 cut(s)	139, 391, 868
TseFI	GTSAC	3 cut(s)	124, 464, 605
TseI	GCWGC	3 cut(s)	295, 494, 857
Tsp45I	GTSAC	3 cut(s)	124, 464, 605
TspDTI	ATGAA	7 cut(s)	17, 95, 341, 619, 752, 780, 824
TspRI	CASTG	3 cut(s)	139, 391, 868
Van91I	CCANNNNNTGG	1 cut(s)	111
XceI	RCATGY	3 cut(s)	313, 659, 1141
XmiI	GTMKAC	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	1131
XspI	CTAG	3 cut(s)	402, 429, 1116
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.