Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0017368

Physical Location & Seq

Genomic Coordinates Reverse (-)

65680154 .. 65682050

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG429800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCTTCCGCTACATTATCTCTGAAGCAAATGCTCATGAAGCCAACCTCATTGTTTGGTGCCAAGTTATGGGTTCTGCTTGTGACCTTCACTGTTCTATTCACCCTTCTGGTGATTGTCTTTGTCTTGGTGATCTATATCATCCGGTACCGCCGGCACCGGAAGTCCTACAATTCCCATTTGTGTGTACAAAATCCCATTGCTTCCAAAGTCCCTCACATTGCTTATGGTCACTCATCTCTTGATCGGAGGCTGCTTTCGCTTAACATGTCCAAAATTGAGATGAACAATGGGAAGGAGAGGCAAACTGTGCTCTCTGATCAGCTGTCCTCTACTGGCGCCAGTGGGATAACCCCCACTAGTACTAAGGTGAGTGAATCGGAATCTAGGTACTCTTCGGTGGTTAAAGATGTGTGGAGGGGTGACAAGTTTACTCTAAGGGAACTTGAGGCAGCAACAAATGGGTTTGGTAGAGAAAATCTGATTGGCAATGGAGACTATGGCATTGTATATCATGGTATTCTGTTTGATAATATTCGTGTGGCGGTGAAGAGGCTTGTGAGTGACAGTTGCGTTTGTTGTTGGAACTCTAAAACATTGAATAATGTGACTCCTGTTTTGCAGCCATATCTGGTAGACTGGTTAAAGTCCATGGTTGCCAGTCAAAGAACTGCTTATGTAGTTGATCCTAAATTGCCAGAGAAGCCATCTTCAAAAGAACTCAAAAGGGTTCTTCTGGTTGCTCTTCGTTGCGCTGATCCTGATTTAGAAGATAGGCCTAGAATGGGAGAAGTTCTTCACATGCTTGAGCCCCGCGACTTGCTAATGCTCGACGATCGATGGCTTAAGAGATCGAGAGACTGCTCATCATCTTTGCCTACAAGAGAGCTTCTGCAAGAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

301

Amino Acids

34.19

Weight (kDa)

9.49

Isoelectric Point (pI)

40.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017368)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g30240
malus_domestica	MD01G1208500.v1.1
prunus_persica	Prupe.2G301100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0378371
rosa_laevigata	RLG00000026440
rosa_multiflora	Rmu_sc0013545.1_g000010
rosa_roxburghii	Rroxscaffold_4G00280500
rosa_rugosa	Rorug01G0408300
rosa_samantha	Rh1AG429800 Rh1BG387500 Rh1CG401000 Rh1DG418600
rosa_wichuraiana	Rw1G037610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	147
AccB1I	GGYRCC	4 cut(s)	59, 147, 156, 338
AccB7I	CCANNNNNTGG	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	636
AccII	CGCG	1 cut(s)	816
AciI	CCGC	4 cut(s)	9, 151, 545, 814
AclWI	GGATC	2 cut(s)	680, 752
AcuI	CTGAAG	1 cut(s)	44
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	4 cut(s)	149, 189, 364, 392
AfiI	CCNNNNNNNGG	2 cut(s)	69, 785
AflII	CTTAAG	1 cut(s)	845
AflIII	ACRYGT	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	601, 714
AhlI	ACTAGT	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AluBI	AGCT	2 cut(s)	325, 889
AluI	AGCT	2 cut(s)	325, 889
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	2 cut(s)	489, 852
AlwI	GGATC	2 cut(s)	680, 752
AoxI	GGCC	1 cut(s)	776
ApeKI	GCWGC	3 cut(s)	253, 452, 622
ArsI	GACNNNNNNTTYG	2 cut(s)	601, 633
Asp700I	GAANNNNTTC	1 cut(s)	795
Asp718I	GGTACC	1 cut(s)	147
AspLEI	GCGC	2 cut(s)	341, 755
AsuHPI	GGTGA	6 cut(s)	94, 124, 142, 382, 434, 559
BanI	GGYRCC	4 cut(s)	59, 147, 156, 338
BanII	GRGCYC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	240, 464, 634
BccI	CCATC	2 cut(s)	715, 834
BclI	TGATCA	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	489, 852
BcuI	ACTAGT	1 cut(s)	359
BfaI	CTAG	3 cut(s)	360, 387, 780
BfoI	RGCGCY	1 cut(s)	342
BfrI	CTTAAG	1 cut(s)	845
BisI	GCNGC	3 cut(s)	254, 453, 623
BlsI	GCNGC	3 cut(s)	255, 454, 624
BmcAI	AGTACT	1 cut(s)	364
BmiI	GGNNCC	4 cut(s)	61, 149, 158, 340
BpuEI	CTTGAG	2 cut(s)	467, 827
Bsa29I	ATCGAT	1 cut(s)	838
BsaBI	GATNNNNATC	1 cut(s)	137
BsaHI	GRCGYC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	651
BsaWI	WCCGGW	2 cut(s)	144, 159
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 785
Bse118I	RCCGGY	1 cut(s)	153
Bse1I	ACTGG	4 cut(s)	340, 342, 644, 660
Bse3DI	GCAATG	3 cut(s)	198, 219, 496
Bse8I	GATNNNNATC	1 cut(s)	137
BseCI	ATCGAT	1 cut(s)	838
BseDI	CCNNGG	1 cut(s)	651
BseGI	GGATG	1 cut(s)	141
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	69, 785
BseMI	GCAATG	3 cut(s)	198, 219, 496
BseNI	ACTGG	4 cut(s)	340, 342, 644, 660
BseXI	GCAGC	3 cut(s)	240, 464, 634
Bsh1236I	CGCG	1 cut(s)	816
Bsh1285I	CGRYCG	1 cut(s)	838
BshFI	GGCC	1 cut(s)	778
BshNI	GGYRCC	4 cut(s)	59, 147, 156, 338
BshVI	ATCGAT	1 cut(s)	838
BsiEI	CGRYCG	1 cut(s)	838
BsiHKAI	GWGCWC	1 cut(s)	315
BsiSI	CCGG	3 cut(s)	145, 154, 160
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	69, 785
BsmAI	GTCTC	2 cut(s)	489, 852
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	778
Bsp1286I	GDGCHC	2 cut(s)	315, 813
Bsp1407I	TGTACA	1 cut(s)	187
Bsp143I	GATC	7 cut(s)	132, 244, 319, 685, 757, 835, 851
Bsp19I	CCATGG	1 cut(s)	651
BspACI	CCGC	4 cut(s)	9, 151, 545, 814
BspANI	GGCC	1 cut(s)	778
BspDI	ATCGAT	1 cut(s)	838
BspFNI	CGCG	1 cut(s)	816
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	4 cut(s)	61, 149, 158, 340
BspPI	GGATC	2 cut(s)	680, 752
BspQI	GCTCTTC	1 cut(s)	750
BspT107I	GGYRCC	4 cut(s)	59, 147, 156, 338
BspTI	CTTAAG	1 cut(s)	845
BsrDI	GCAATG	3 cut(s)	198, 219, 496
BsrFI	RCCGGY	1 cut(s)	153
BsrGI	TGTACA	1 cut(s)	187
BsrI	ACTGG	4 cut(s)	340, 342, 644, 660
BssAI	RCCGGY	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	651
BssMI	GATC	7 cut(s)	132, 244, 319, 685, 757, 835, 851
BssNI	GRCGYC	1 cut(s)	339
BssT1I	CCWWGG	1 cut(s)	651
Bst4CI	ACNGT	3 cut(s)	94, 310, 569
Bst6I	CTCTTC	3 cut(s)	400, 545, 750
BstACI	GRCGYC	1 cut(s)	339
BstAFI	CTTAAG	1 cut(s)	845
BstAPI	GCANNNNNTGC	1 cut(s)	310
BstAUI	TGTACA	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	155
BstDEI	CTNAG	2 cut(s)	366, 437
BstDSI	CCRYGG	1 cut(s)	651
BstF5I	GGATG	1 cut(s)	141
BstFNI	CGCG	1 cut(s)	816
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	341, 755
BstKTI	GATC	7 cut(s)	135, 247, 322, 688, 760, 838, 854
BstMAI	GTCTC	2 cut(s)	489, 852
BstMBI	GATC	7 cut(s)	132, 244, 319, 685, 757, 835, 851
BstMCI	CGRYCG	1 cut(s)	838
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 259, 310, 703
BstNSI	RCATGY	2 cut(s)	271, 805
BstUI	CGCG	1 cut(s)	816
BstV1I	GCAGC	3 cut(s)	240, 464, 634
Bsu15I	ATCGAT	1 cut(s)	838
BsuRI	GGCC	1 cut(s)	778
BsuTUI	ATCGAT	1 cut(s)	838
BtgI	CCRYGG	1 cut(s)	651
BtsCI	GGATG	1 cut(s)	141
BtsIMutI	CAGTG	2 cut(s)	90, 349
Cac8I	GCNNGC	1 cut(s)	155
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	2 cut(s)	341, 755
Cfr10I	RCCGGY	1 cut(s)	153
ClaI	ATCGAT	1 cut(s)	838
Csp6I	GTAC	4 cut(s)	148, 188, 363, 391
CviAII	CATG	5 cut(s)	37, 268, 515, 652, 802
CviQI	GTAC	4 cut(s)	148, 188, 363, 391
DdeI	CTNAG	2 cut(s)	366, 437
DinI	GGCGCC	1 cut(s)	340
DpnI	GATC	7 cut(s)	134, 246, 321, 687, 759, 837, 853
DpnII	GATC	7 cut(s)	132, 244, 319, 685, 757, 835, 851
Eam1104I	CTCTTC	3 cut(s)	400, 545, 750
EarI	CTCTTC	3 cut(s)	400, 545, 750
Eco130I	CCWWGG	1 cut(s)	651
Eco147I	AGGCCT	1 cut(s)	778
Eco24I	GRGCYC	1 cut(s)	813
Eco57I	CTGAAG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	651
EcoT38I	GRGCYC	1 cut(s)	813
EgeI	GGCGCC	1 cut(s)	340
EheI	GGCGCC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	651
FaeI	CATG	5 cut(s)	40, 271, 518, 655, 805
FalI	AAGNNNNNCTT	2 cut(s)	658, 690
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	5 cut(s)	36, 267, 514, 651, 801
FauI	CCCGC	1 cut(s)	821
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	1 cut(s)	636
Fnu4HI	GCNGC	3 cut(s)	254, 453, 623
FokI	GGATG	1 cut(s)	128
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	3 cut(s)	254, 453, 623
FspBI	CTAG	3 cut(s)	360, 387, 780
GlaI	GCGC	2 cut(s)	340, 754
GluI	GCNGC	3 cut(s)	254, 453, 623
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	778
HapII	CCGG	3 cut(s)	145, 154, 160
HhaI	GCGC	2 cut(s)	341, 755
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	5 cut(s)	40, 271, 518, 655, 805
Hin6I	GCGC	2 cut(s)	339, 753
HinP1I	GCGC	2 cut(s)	339, 753
HinfI	GANTC	3 cut(s)	377, 383, 610
HpaII	CCGG	3 cut(s)	145, 154, 160
HphI	GGTGA	6 cut(s)	94, 124, 142, 382, 434, 559
Hpy166II	GTNNAC	3 cut(s)	188, 432, 637
Hpy188I	TCNGA	5 cut(s)	24, 249, 319, 382, 483
Hpy188III	TCNNGA	4 cut(s)	37, 242, 761, 855
Hpy8I	GTNNAC	3 cut(s)	188, 432, 637
Hpy99I	CGWCG	1 cut(s)	836
HpyAV	CCTTC	3 cut(s)	97, 116, 289
HpyCH4III	ACNGT	3 cut(s)	94, 310, 569
HpyCH4V	TGCA	2 cut(s)	622, 895
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 259, 310, 703
HpyF3I	CTNAG	2 cut(s)	366, 437
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	5 cut(s)	40, 271, 518, 655, 805
HspAI	GCGC	2 cut(s)	339, 753
KasI	GGCGCC	1 cut(s)	338
KpnI	GGTACC	1 cut(s)	151
KroI	GCCGGC	1 cut(s)	153
KroNI	GCCGGC	1 cut(s)	155
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	7 cut(s)	132, 244, 319, 685, 757, 835, 851
LguI	GCTCTTC	1 cut(s)	750
Lsp1109I	GCAGC	3 cut(s)	240, 464, 634
MaeI	CTAG	3 cut(s)	360, 387, 780
MaeIII	GTNAC	5 cut(s)	82, 230, 422, 563, 607
MalI	GATC	7 cut(s)	134, 246, 321, 687, 759, 837, 853
MboI	GATC	7 cut(s)	132, 244, 319, 685, 757, 835, 851
MboII	GAAGA	7 cut(s)	387, 562, 702, 725, 737, 782, 788
MhlI	GDGCHC	2 cut(s)	315, 813
MluCI	AATT	3 cut(s)	172, 276, 692
Mly113I	GGCGCC	1 cut(s)	339
MlyI	GAGTC	1 cut(s)	604
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	8 cut(s)	58, 225, 243, 294, 340, 411, 442, 546
MroNI	GCCGGC	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	4 cut(s)	264, 405, 644, 846
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	325
MspCI	CTTAAG	1 cut(s)	845
MspI	CCGG	3 cut(s)	145, 154, 160
MvnI	CGCG	1 cut(s)	816
MwoI	GCNNNNNNNGC	4 cut(s)	40, 259, 310, 703
NaeI	GCCGGC	1 cut(s)	155
NarI	GGCGCC	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	651
NdeII	GATC	7 cut(s)	132, 244, 319, 685, 757, 835, 851
NgoMIV	GCCGGC	1 cut(s)	153
NlaIII	CATG	5 cut(s)	40, 271, 518, 655, 805
NlaIV	GGNNCC	4 cut(s)	61, 149, 158, 340
NmuCI	GTSAC	5 cut(s)	82, 230, 422, 563, 607
NspI	RCATGY	2 cut(s)	271, 805
PagI	TCATGA	1 cut(s)	36
PceI	AGGCCT	1 cut(s)	778
PciI	ACATGT	1 cut(s)	267
PciSI	GCTCTTC	1 cut(s)	750
PdiI	GCCGGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	2 cut(s)	377, 383
PflMI	CCANNNNNTGG	1 cut(s)	69
PkrI	GCNGC	3 cut(s)	255, 454, 624
Ple19I	CGATCG	1 cut(s)	838
PleI	GAGTC	1 cut(s)	604
PluTI	GGCGCC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	604
PscI	ACATGT	1 cut(s)	267
PspN4I	GGNNCC	4 cut(s)	61, 149, 158, 340
PvuI	CGATCG	1 cut(s)	838
PvuII	CAGCTG	1 cut(s)	325
RsaI	GTAC	4 cut(s)	149, 189, 364, 392
RsaNI	GTAC	4 cut(s)	148, 188, 363, 391
RseI	CAYNNNNRTG	1 cut(s)	183
SapI	GCTCTTC	1 cut(s)	750
SaqAI	TTAA	4 cut(s)	264, 405, 644, 846
SatI	GCNGC	3 cut(s)	254, 453, 623
Sau3AI	GATC	7 cut(s)	132, 244, 319, 685, 757, 835, 851
ScaI	AGTACT	1 cut(s)	364
SchI	GAGTC	1 cut(s)	604
SduI	GDGCHC	2 cut(s)	315, 813
SetI	ASST	6 cut(s)	50, 89, 327, 372, 392, 891
SfoI	GGCGCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	1 cut(s)	183
SmlI	CTYRAG	3 cut(s)	446, 806, 845
SmoI	CTYRAG	3 cut(s)	446, 806, 845
SpeI	ACTAGT	1 cut(s)	359
Sse9I	AATT	3 cut(s)	172, 276, 692
SseBI	AGGCCT	1 cut(s)	778
SsiI	CCGC	4 cut(s)	9, 151, 545, 814
SspDI	GGCGCC	1 cut(s)	338
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	3 cut(s)	360, 387, 780
StuI	AGGCCT	1 cut(s)	778
StyI	CCWWGG	1 cut(s)	651
TaaI	ACNGT	3 cut(s)	94, 310, 569
TaqI	TCGA	3 cut(s)	831, 838, 854
TasI	AATT	3 cut(s)	172, 276, 692
TatI	WGTACW	2 cut(s)	187, 362
TfiI	GAWTC	2 cut(s)	377, 383
Tru1I	TTAA	4 cut(s)	264, 405, 644, 846
Tru9I	TTAA	4 cut(s)	264, 405, 644, 846
TscAI	CASTG	2 cut(s)	97, 349
TseFI	GTSAC	5 cut(s)	82, 230, 422, 563, 607
TseI	GCWGC	3 cut(s)	253, 452, 622
Tsp45I	GTSAC	5 cut(s)	82, 230, 422, 563, 607
TspDTI	ATGAA	2 cut(s)	53, 299
TspRI	CASTG	2 cut(s)	97, 349
Van91I	CCANNNNNTGG	1 cut(s)	69
Vha464I	CTTAAG	1 cut(s)	845
XceI	RCATGY	2 cut(s)	271, 805
XmiI	GTMKAC	1 cut(s)	636
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	3 cut(s)	360, 387, 780
ZrmI	AGTACT	1 cut(s)	364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.