Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005335

Physical Location & Seq

Genomic Coordinates Forward (+)

23144366 .. 23148419

Gene Structure 4054 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32160.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGATGCACATTGCTTGCTTGAAATATTCAATGTCTTCCGAGAGAAGGTCATCAAGGAAGGGATCTTAGTTCACTCTTCTTCTGAACATCATCCCCCCATTGTGAACCTTGGGTTGAAACAAGTACTTCTTGAGAAGTTTGATATATGTAATAAAGTTGTAAGGATGAAATTTCGTGAAGCTGTAGATATGGTCCGAGCTACAGATGTTTCTAATGATATAAGTGCCGTAGAGGGAACAGCTATAGTGACACAACCTAGGAATACCCAGCCCATGGATGAATTTCTCTTGATGGTTGCAAGCAAATATGGGGAAAATATTTTGTTGGGAGAATCTGATAAGAAACCCAAAGCTGCCAAAAGAAAAGGCAAAAGGCGGTCATCAGTGGGTTACAAGCATGGACAATATGACGATGATTGGAAAGGTCCTGCACCATGGGATTTGACTGTAGGGGGCGATGGACATCCAAAGTTTTTATGTGATGTGATGGTTGAAGGCTTAGCTAAACATTTAAGGTGCGTTGGTATAGATGCTGCAAGCCCATATTCGAAAAAGCCTGAATCCAGGGAATTAATAGATCATGCAAACAGAGAGAAAAGAGTGCTCTTGACGCGGGATGCTAAGCTACTTAGATATGAGTATCTAATCATTAATCAAATATATAGGGTGAAGAATCTTCTAAAGAATGAACAGCTACTTGAGGTCATTGAAACTTTCCAACTGAAAGTTAGTGAAGATCAGCTGATGTCAAGATGCACCAGATGCAATGGTAGGTTTATTCAAAAGCCCTTGTCGACTGAAGAGGCTGTGGAAGCTGCCAAAGGTTTCCAAAGAATCCCTAACTGCTTGTTTGATAAGAATCTACAGTTTTGGCAGTGCATGGACTGCAACCAGCTTTACTGGGAGGGAACTCAGTACCACAATGCAGTTCAGAAGTTCATTGATGTCTGCAAGTTGAACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 Mut7-C

Protein Analysis

322

Amino Acids

36.9

Weight (kDa)

8.42

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	17 - 209	3e-23	3'-5' exonuclease
Mut7-C	PF01927	348 - 427	4.9e-16	Mut7-C RNAse domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24340 AT5G24340
fragaria_vesca	FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160
malus_domestica	MD07G1295100.v1.1
prunus_persica	Prupe.2G314700_v2.0.a1
pyrus_communis	pycom07g26770
rosa_chinensis	RchiOBHm_Chr1g0381781
rosa_laevigata	RLG00000026206
rosa_multiflora	Rmu_sc0031098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278460
rosa_rugosa	Rorug01G0430900
rosa_samantha	Rh1AG454300 Rh1BG411700 Rh1CG425900 Rh1DG009300 Rh1DG443600 Rh2AG143300 Rh2BG148500 Rh3DG348400 Rh4BG131200 Rh5AG031700 Rh5AG441500 Rh5CG034400
rosa_wichuraiana	Rw1G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	794
AccII	CGCG	1 cut(s)	613
AciI	CCGC	2 cut(s)	376, 613
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	170, 281
AcuI	CTGAAG	1 cut(s)	819
AfaI	GTAC	2 cut(s)	126, 917
AfiI	CCNNNNNNNGG	2 cut(s)	46, 274
AgsI	TTSAA	7 cut(s)	23, 31, 118, 494, 710, 782, 958
AjnI	CCWGG	1 cut(s)	563
Alw21I	GWGCWC	1 cut(s)	606
AlwI	GGATC	1 cut(s)	71
ApeKI	GCWGC	3 cut(s)	353, 533, 815
ApoI	RAATTY	2 cut(s)	170, 281
AseI	ATTAAT	2 cut(s)	572, 651
AspA2I	CCTAGG	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	193, 425
AsuHPI	GGTGA	1 cut(s)	679
AsuII	TTCGAA	1 cut(s)	548
AvaII	GGWCC	2 cut(s)	193, 425
AvrII	CCTAGG	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	606
BbvI	GCAGC	3 cut(s)	340, 520, 802
BccI	CCATC	3 cut(s)	286, 452, 481
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	565
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	5 cut(s)	183, 201, 243, 447, 863
BisI	GCNGC	3 cut(s)	354, 534, 816
BlnI	CCTAGG	1 cut(s)	257
BlpI	GCTNAGC	2 cut(s)	499, 621
BlsI	GCNGC	3 cut(s)	355, 535, 817
BmcAI	AGTACT	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	565
Bme18I	GGWCC	2 cut(s)	193, 425
BmgT120I	GGNCC	2 cut(s)	193, 425
BmrFI	CCNGG	1 cut(s)	565
BmrI	ACTGGG	1 cut(s)	910
BmsI	GCATC	4 cut(s)	520, 607, 743, 752
BmuI	ACTGGG	1 cut(s)	910
BpiI	GAAGAC	1 cut(s)	28
Bpu1102I	GCTNAGC	2 cut(s)	499, 621
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	2 cut(s)	152, 719
BsaBI	GATNNNNATC	2 cut(s)	462, 858
BsaJI	CCNNGG	5 cut(s)	109, 257, 273, 434, 564
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 274
Bse1I	ACTGG	1 cut(s)	905
Bse3DI	GCAATG	2 cut(s)	10, 772
Bse8I	GATNNNNATC	2 cut(s)	462, 858
BseBI	CCWGG	1 cut(s)	565
BseDI	CCNNGG	5 cut(s)	109, 257, 273, 434, 564
BseGI	GGATG	6 cut(s)	10, 91, 171, 283, 463, 622
BseJI	GATNNNNATC	2 cut(s)	462, 858
BseLI	CCNNNNNNNGG	2 cut(s)	46, 274
BseMI	GCAATG	2 cut(s)	10, 772
BseMII	CTCAG	1 cut(s)	926
BseNI	ACTGG	1 cut(s)	905
BseXI	GCAGC	3 cut(s)	340, 520, 802
BseYI	CCCAGC	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	414
Bsh1236I	CGCG	1 cut(s)	613
BsiHKAI	GWGCWC	1 cut(s)	606
BslI	CCNNNNNNNGG	2 cut(s)	46, 274
Bsp119I	TTCGAA	1 cut(s)	548
Bsp1286I	GDGCHC	1 cut(s)	606
Bsp143I	GATC	3 cut(s)	63, 577, 736
Bsp1720I	GCTNAGC	2 cut(s)	499, 621
Bsp19I	CCATGG	2 cut(s)	273, 434
BspACI	CCGC	2 cut(s)	376, 613
BspCNI	CTCAG	1 cut(s)	925
BspFNI	CGCG	1 cut(s)	613
BspPI	GGATC	1 cut(s)	71
BspT104I	TTCGAA	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	10, 772
BsrI	ACTGG	1 cut(s)	905
BssECI	CCNNGG	5 cut(s)	109, 257, 273, 434, 564
BssMI	GATC	3 cut(s)	63, 577, 736
BssT1I	CCWWGG	4 cut(s)	109, 257, 273, 434
Bst2UI	CCWGG	1 cut(s)	565
Bst4CI	ACNGT	2 cut(s)	448, 867
Bst6I	CTCTTC	2 cut(s)	82, 795
BstAPI	GCANNNNNTGC	2 cut(s)	762, 885
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	3 cut(s)	17, 301, 538
BstDEI	CTNAG	5 cut(s)	67, 499, 621, 629, 912
BstDSI	CCRYGG	2 cut(s)	273, 434
BstF5I	GGATG	6 cut(s)	10, 91, 171, 283, 463, 622
BstFNI	CGCG	1 cut(s)	613
BstKTI	GATC	3 cut(s)	66, 580, 739
BstMBI	GATC	3 cut(s)	63, 577, 736
BstMWI	GCNNNNNNNGC	4 cut(s)	610, 762, 812, 885
BstNI	CCWGG	1 cut(s)	565
BstSCI	CCNGG	1 cut(s)	563
BstSFI	CTRYAG	5 cut(s)	183, 201, 243, 447, 863
BstUI	CGCG	1 cut(s)	613
BstV1I	GCAGC	3 cut(s)	340, 520, 802
BstV2I	GAAGAC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
BtgI	CCRYGG	2 cut(s)	273, 434
BtgZI	GCGATG	1 cut(s)	471
BtsCI	GGATG	6 cut(s)	10, 91, 171, 283, 463, 622
BtsI	GCAGTG	1 cut(s)	881
BtsIMutI	CAGTG	2 cut(s)	390, 881
Cac8I	GCNNGC	3 cut(s)	17, 301, 538
Cfr13I	GGNCC	2 cut(s)	193, 425
CseI	GACGC	1 cut(s)	619
Csp6I	GTAC	2 cut(s)	125, 916
CviAII	CATG	5 cut(s)	274, 398, 435, 581, 880
CviQI	GTAC	2 cut(s)	125, 916
DdeI	CTNAG	5 cut(s)	67, 499, 621, 629, 912
DpnI	GATC	3 cut(s)	65, 579, 738
DpnII	GATC	3 cut(s)	63, 577, 736
Eam1104I	CTCTTC	2 cut(s)	82, 795
EarI	CTCTTC	2 cut(s)	82, 795
Eco130I	CCWWGG	4 cut(s)	109, 257, 273, 434
Eco47I	GGWCC	2 cut(s)	193, 425
Eco57I	CTGAAG	1 cut(s)	819
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	563
EcoT14I	CCWWGG	4 cut(s)	109, 257, 273, 434
ErhI	CCWWGG	4 cut(s)	109, 257, 273, 434
FaeI	CATG	5 cut(s)	277, 401, 438, 584, 883
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FatI	CATG	5 cut(s)	273, 397, 434, 580, 879
FauI	CCCGC	1 cut(s)	606
FblI	GTMKAC	1 cut(s)	794
Fnu4HI	GCNGC	3 cut(s)	354, 534, 816
FokI	GGATG	6 cut(s)	17, 78, 178, 290, 450, 629
Fsp4HI	GCNGC	3 cut(s)	354, 534, 816
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	3 cut(s)	354, 534, 816
GsaI	CCCAGC	1 cut(s)	271
HgaI	GACGC	1 cut(s)	619
Hin1II	CATG	5 cut(s)	277, 401, 438, 584, 883
HincII	GTYRAC	1 cut(s)	795
HindII	GTYRAC	1 cut(s)	795
HinfI	GANTC	5 cut(s)	332, 560, 673, 834, 859
HphI	GGTGA	1 cut(s)	679
Hpy166II	GTNNAC	3 cut(s)	73, 106, 795
Hpy188I	TCNGA	5 cut(s)	41, 85, 197, 337, 933
Hpy188III	TCNNGA	5 cut(s)	131, 176, 289, 607, 750
Hpy8I	GTNNAC	3 cut(s)	73, 106, 795
HpyAV	CCTTC	3 cut(s)	40, 53, 488
HpyCH4III	ACNGT	2 cut(s)	448, 867
HpyF10VI	GCNNNNNNNGC	4 cut(s)	610, 762, 812, 885
HpyF3I	CTNAG	5 cut(s)	67, 499, 621, 629, 912
Hsp92II	CATG	5 cut(s)	277, 401, 438, 584, 883
Kzo9I	GATC	3 cut(s)	63, 577, 736
LpnPI	CCDG	8 cut(s)	281, 441, 550, 570, 577, 772, 886, 905
Lsp1109I	GCAGC	3 cut(s)	340, 520, 802
LweI	GCATC	4 cut(s)	520, 607, 743, 752
MaeI	CTAG	1 cut(s)	258
MaeIII	GTNAC	2 cut(s)	247, 389
MalI	GATC	3 cut(s)	65, 579, 738
MboI	GATC	3 cut(s)	63, 577, 736
MboII	GAAGA	7 cut(s)	28, 69, 72, 668, 682, 746, 812
MflI	RGATCY	1 cut(s)	63
MhlI	GDGCHC	1 cut(s)	606
MluCI	AATT	3 cut(s)	170, 281, 569
MmeI	TCCRAC	1 cut(s)	742
MnlI	CCTC	4 cut(s)	226, 694, 796, 898
MseI	TTAA	3 cut(s)	512, 572, 651
MspA1I	CMGCKG	1 cut(s)	742
MspR9I	CCNGG	1 cut(s)	565
MvaI	CCWGG	1 cut(s)	565
MvnI	CGCG	1 cut(s)	613
MwoI	GCNNNNNNNGC	4 cut(s)	610, 762, 812, 885
NcoI	CCATGG	2 cut(s)	273, 434
NdeII	GATC	3 cut(s)	63, 577, 736
NlaIII	CATG	5 cut(s)	277, 401, 438, 584, 883
NmuCI	GTSAC	1 cut(s)	247
NspV	TTCGAA	1 cut(s)	548
PfeI	GAWTC	5 cut(s)	332, 560, 673, 834, 859
PflMI	CCANNNNNTGG	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	355, 535, 817
PpuMI	RGGWCCY	1 cut(s)	425
PshBI	ATTAAT	2 cut(s)	572, 651
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	1 cut(s)	563
PspFI	CCCAGC	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	563
PspPI	GGNCC	2 cut(s)	193, 425
PspPPI	RGGWCCY	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	742
RsaI	GTAC	2 cut(s)	126, 917
RsaNI	GTAC	2 cut(s)	125, 916
SalI	GTCGAC	1 cut(s)	793
SaqAI	TTAA	3 cut(s)	512, 572, 651
SatI	GCNGC	3 cut(s)	354, 534, 816
Sau3AI	GATC	3 cut(s)	63, 577, 736
Sau96I	GGNCC	2 cut(s)	193, 425
ScaI	AGTACT	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	565
SduI	GDGCHC	1 cut(s)	606
SfaNI	GCATC	4 cut(s)	520, 607, 743, 752
SfcI	CTRYAG	5 cut(s)	183, 201, 243, 447, 863
SfuI	TTCGAA	1 cut(s)	548
SinI	GGWCC	2 cut(s)	193, 425
SmlI	CTYRAG	2 cut(s)	131, 698
SmoI	CTYRAG	2 cut(s)	131, 698
Sse9I	AATT	3 cut(s)	170, 281, 569
SsiI	CCGC	2 cut(s)	376, 613
SspI	AATATT	2 cut(s)	27, 319
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	1 cut(s)	563
StyI	CCWWGG	4 cut(s)	109, 257, 273, 434
TaaI	ACNGT	2 cut(s)	448, 867
TaqI	TCGA	2 cut(s)	548, 794
TasI	AATT	3 cut(s)	170, 281, 569
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	5 cut(s)	332, 560, 673, 834, 859
Tru1I	TTAA	3 cut(s)	512, 572, 651
Tru9I	TTAA	3 cut(s)	512, 572, 651
TscAI	CASTG	2 cut(s)	390, 881
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	353, 533, 815
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	182, 294, 702, 928
TspRI	CASTG	2 cut(s)	390, 881
Van91I	CCANNNNNTGG	1 cut(s)	274
VpaK11BI	GGWCC	2 cut(s)	193, 425
VspI	ATTAAT	2 cut(s)	572, 651
XapI	RAATTY	2 cut(s)	170, 281
XmaJI	CCTAGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	794
XspI	CTAG	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.