Rh1DG009300

Exonuclease mut-7 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005335
Physical Location & Seq
Forward (+)
1557416 .. 1557700
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG009300.1

Sequence Viewer

Length: 285 bp
ATGCCCCTGAAAACCCACTTCATCTCCTCCACCAATTCTCCCGAGTTCACTAACCTAACCACCTCCTTGACTCGCTCCGCCATCATTGCCCTCGACGTCGAGTGGAATCCCCTCCGCTTCCACCACCCCACTTACCCAACCGTCCCTCTCCTCCAACTTGCCTTCCAACTCGGCCACAAACTCGCCGGCGACTCGGTTGTCGTCATCTTCCTGCTCGACTGGACCCTCCTCCAGATCAACTCGCACCTCCAATTCCTTCAACGGGTCCTTCTCCGACTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1 Mut7-C

Protein Analysis

94

Amino Acids

10.73

Weight (kDa)

8.34

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AatII GACGTC 1 cut(s) 99
AciI CCGC 2 cut(s) 78, 115
AcoI YGGCCR 1 cut(s) 172
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 262
AgsI TTSAA 1 cut(s) 260
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 222, 265
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 2 cut(s) 222, 265
BccI CCATC 1 cut(s) 89
Bme18I GGWCC 2 cut(s) 222, 265
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 2 cut(s) 222, 265
BmiI GGNNCC 2 cut(s) 224, 266
BpmI CTGGAG 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 96
BsaXI ACNNNNNCTCC 4 cut(s) 8, 22, 38, 52
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 224
Bse3DI GCAATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMI GCAATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 3 cut(s) 16, 140, 218
BshFI GGCC 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 174
BsoBI CYCGRG 1 cut(s) 41
Bsp143I GATC 1 cut(s) 234
BspACI CCGC 2 cut(s) 78, 115
BspANI GGCC 1 cut(s) 174
BspHI TCATGA 1 cut(s) 281
BspLI GGNNCC 2 cut(s) 224, 266
BsrDI GCAATG 1 cut(s) 84
BsrFI RCCGGY 1 cut(s) 185
BsrI ACTGG 1 cut(s) 224
BssAI RCCGGY 1 cut(s) 185
BssMI GATC 1 cut(s) 234
BssNI GRCGYC 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 187
BstKTI GATC 1 cut(s) 237
BstMBI GATC 1 cut(s) 234
BstMWI GCNNNNNNNGC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 187
CciI TCATGA 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 222, 265
CviAII CATG 1 cut(s) 282
CviJI RGCY 1 cut(s) 174
CviKI_1 RGCY 1 cut(s) 174
DpnI GATC 1 cut(s) 236
DpnII GATC 1 cut(s) 234
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 172
EciI GGCGGA 1 cut(s) 67
Eco47I GGWCC 2 cut(s) 222, 265
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 265
FaeI CATG 1 cut(s) 285
FaiI YATR 1 cut(s) 283
FaqI GGGAC 1 cut(s) 128
FatI CATG 1 cut(s) 281
GsuI CTGGAG 1 cut(s) 215
HaeIII GGCC 1 cut(s) 174
HapII CCGG 1 cut(s) 186
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 285
HinfI GANTC 3 cut(s) 70, 106, 191
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 275
Hpy188III TCNNGA 3 cut(s) 41, 232, 282
Hpy8I GTNNAC 1 cut(s) 48
Hpy99I CGWCG 2 cut(s) 98, 101
HpyAV CCTTC 3 cut(s) 172, 266, 278
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 96
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 96
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 285
KroI GCCGGC 1 cut(s) 185
KroNI GCCGGC 1 cut(s) 187
Kzo9I GATC 1 cut(s) 234
LmnI GCTCC 1 cut(s) 80
LpnPI CCDG 5 cut(s) 20, 199, 205, 224, 245
MaeII ACGT 1 cut(s) 96
MalI GATC 1 cut(s) 236
MboI GATC 1 cut(s) 234
MboII GAAGA 1 cut(s) 199
MluCI AATT 2 cut(s) 34, 251
MlyI GAGTC 2 cut(s) 64, 185
MmeI TCCRAC 2 cut(s) 178, 190
MnlI CCTC 9 cut(s) 37, 73, 101, 122, 156, 161, 236, 239, 257
MreI CGCCGGCG 1 cut(s) 185
MroNI GCCGGC 1 cut(s) 185
MspI CCGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 86
NaeI GCCGGC 1 cut(s) 187
NdeII GATC 1 cut(s) 234
NgoMIV GCCGGC 1 cut(s) 185
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 2 cut(s) 224, 266
NmeAIII GCCGAG 1 cut(s) 150
PagI TCATGA 1 cut(s) 281
PdiI GCCGGC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 106
PleI GAGTC 2 cut(s) 64, 185
PpsI GAGTC 2 cut(s) 64, 185
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
PspN4I GGNNCC 2 cut(s) 224, 266
PspPI GGNCC 2 cut(s) 222, 265
PspPPI RGGWCCY 1 cut(s) 265
Sau3AI GATC 1 cut(s) 234
Sau96I GGNCC 2 cut(s) 222, 265
SchI GAGTC 2 cut(s) 64, 185
SetI ASST 4 cut(s) 57, 65, 99, 249
SgrAI CRCCGGYG 1 cut(s) 185
SinI GGWCC 2 cut(s) 222, 265
Sse9I AATT 2 cut(s) 34, 251
SsiI CCGC 2 cut(s) 78, 115
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 93, 99, 216
TasI AATT 2 cut(s) 34, 251
TfiI GAWTC 1 cut(s) 106
TspDTI ATGAA 1 cut(s) 10
VpaK11BI GGWCC 2 cut(s) 222, 265
ZraI GACGTC 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.