Rh3DG348400

Exonuclease mut-7 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0005335
Physical Location & Seq
Reverse (-)
39681137 .. 39681430
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG348400.1

Sequence Viewer

Length: 294 bp
ATGGATCCGCAAGACCCAATGCCCCTGAAAACCCACTTCGTCTCCTCCACCGATTCTCCCGAGTTCACTCACCTAACCACCTCCTTGACTCGCTCCGCCATCATTGCCCTCGACGCCGAGTGGAATCCCCTCCGCTCCCAGCACCCCACTTACCCAACCGTCCCTCTCCTCCAACTTGCCTGCAAACTCGACCTCGAACTCGCCGGCGGCTCGATTGTCGTCGTCTTCCTACTCGACTGGACCCTCCTCCAGATCAACTCGCACCTCCAATTCCTTCCACAGGTCCTTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DNA_pol_A_exo1 Mut7-C

Protein Analysis

97

Amino Acids

10.85

Weight (kDa)

4.97

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 135
AciI CCGC 4 cut(s) 8, 96, 133, 207
AclWI GGATC 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 280
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 59
AspS9I GGNCC 2 cut(s) 240, 283
AsuHPI GGTGA 1 cut(s) 62
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 2 cut(s) 240, 283
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 217
BccI CCATC 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 46
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
Bme18I GGWCC 2 cut(s) 240, 283
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 240, 283
BmiI GGNNCC 2 cut(s) 6, 242
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 233
BsaHI GRCGYC 1 cut(s) 114
BsaXI ACNNNNNCTCC 4 cut(s) 26, 40, 56, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMI GCAATG 1 cut(s) 102
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 3 cut(s) 34, 158, 236
BseYI CCCAGC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 59
BsiSI CCGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 46
BsmBI CGTCTC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 2 cut(s) 4, 252
BspACI CCGC 4 cut(s) 8, 96, 133, 207
BspLI GGNNCC 2 cut(s) 6, 242
BspPI GGATC 1 cut(s) 12
BsrBI CCGCTC 1 cut(s) 135
BsrDI GCAATG 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 203
BssMI GATC 2 cut(s) 4, 252
BssNI GRCGYC 1 cut(s) 114
Bst4CI ACNGT 1 cut(s) 160
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 2 cut(s) 181, 205
BstENI CCTNNNNNAGG 1 cut(s) 278
BstKTI GATC 2 cut(s) 7, 255
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 2 cut(s) 4, 252
BstMWI GCNNNNNNNGC 2 cut(s) 104, 113
BstV2I GAAGAC 1 cut(s) 217
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
Cac8I GCNNGC 2 cut(s) 181, 205
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 240, 283
CseI GACGC 1 cut(s) 122
CviJI RGCY 1 cut(s) 210
CviKI_1 RGCY 1 cut(s) 210
DpnI GATC 2 cut(s) 6, 254
DpnII GATC 2 cut(s) 4, 252
EciI GGCGGA 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 240, 283
Eco88I CYCGRG 1 cut(s) 59
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoO109I RGGNCCY 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 46
FaqI GGGAC 1 cut(s) 146
Fnu4HI GCNGC 1 cut(s) 208
Fsp4HI GCNGC 1 cut(s) 208
GluI GCNGC 1 cut(s) 208
GsaI CCCAGC 1 cut(s) 142
GsuI CTGGAG 1 cut(s) 233
HapII CCGG 1 cut(s) 204
HgaI GACGC 1 cut(s) 122
Hin1I GRCGYC 1 cut(s) 114
HinfI GANTC 3 cut(s) 53, 88, 124
HpaII CCGG 1 cut(s) 204
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 1 cut(s) 293
Hpy188III TCNNGA 2 cut(s) 59, 250
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 2 cut(s) 116, 224
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 183
HpyF10VI GCNNNNNNNGC 2 cut(s) 104, 113
Hsp92I GRCGYC 1 cut(s) 114
KroI GCCGGC 1 cut(s) 203
KroNI GCCGGC 1 cut(s) 205
Kzo9I GATC 2 cut(s) 4, 252
LmnI GCTCC 2 cut(s) 98, 140
LpnPI CCDG 7 cut(s) 38, 152, 193, 217, 223, 263, 266
MalI GATC 2 cut(s) 6, 254
MbiI CCGCTC 1 cut(s) 135
MboI GATC 2 cut(s) 4, 252
MboII GAAGA 1 cut(s) 217
MflI RGATCY 1 cut(s) 4
MluCI AATT 1 cut(s) 269
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 196
MreI CGCCGGCG 1 cut(s) 203
MroNI GCCGGC 1 cut(s) 203
MspI CCGG 1 cut(s) 204
MwoI GCNNNNNNNGC 2 cut(s) 104, 113
NaeI GCCGGC 1 cut(s) 205
NdeII GATC 2 cut(s) 4, 252
NgoMIV GCCGGC 1 cut(s) 203
NlaIV GGNNCC 2 cut(s) 6, 242
NmeAIII GCCGAG 1 cut(s) 142
PdiI GCCGGC 1 cut(s) 205
PfeI GAWTC 2 cut(s) 53, 124
PkrI GCNGC 1 cut(s) 209
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 138
PspN4I GGNNCC 2 cut(s) 6, 242
PspPI GGNCC 2 cut(s) 240, 283
PspPPI RGGWCCY 1 cut(s) 283
PsuI RGATCY 1 cut(s) 4
SatI GCNGC 1 cut(s) 208
Sau3AI GATC 2 cut(s) 4, 252
Sau96I GGNCC 2 cut(s) 240, 283
SchI GAGTC 1 cut(s) 82
SetI ASST 5 cut(s) 75, 83, 195, 267, 285
SgrAI CRCCGGYG 1 cut(s) 203
SinI GGWCC 2 cut(s) 240, 283
Sse9I AATT 1 cut(s) 269
SsiI CCGC 4 cut(s) 8, 96, 133, 207
TaaI ACNGT 1 cut(s) 160
TaqI TCGA 5 cut(s) 111, 189, 195, 212, 234
TasI AATT 1 cut(s) 269
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 2 cut(s) 53, 124
VpaK11BI GGWCC 2 cut(s) 240, 283
XagI CCTNNNNNAGG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.