Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005335

Physical Location & Seq

Genomic Coordinates Reverse (-)

52923135 .. 52923536

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0430900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAATAAGGCTATGCTAGCTAAAACTAGTTGGAGAATGATCAATGGTGATAGTGGTTTATGGTGCAAGATGTTTAAGCAAAAGTACCTTCGAAAGGCTTCCCTTCTTGATAAGAATTATACACACCATCCTAATTGTTCAAGCACTTGGAGTAGTGTGCTCCATGGTGCTAAACTTCTTAGAGATGGTTTACTTTGGAAAGTAGGGAATGAGAATACTATTAAGTTTTGGATCGATGATTGGACTAGACATGGAGCCCCCTCTTTCTTTGCCTTTGATGCTAATCTTGTTGACTACAATGCTCTTGTCCAGGATTTTTGGCTCAGTAATGGATGGAATTTTGATCTCCTAAAGGCATGCCTCCCTGATCACATTATTGATATTATTGGTAAAAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 Mut7-C

Protein Analysis

133

Amino Acids

15.46

Weight (kDa)

9.01

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24340 AT5G24340
fragaria_vesca	FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160
malus_domestica	MD07G1295100.v1.1
prunus_persica	Prupe.2G314700_v2.0.a1
pyrus_communis	pycom07g26770
rosa_chinensis	RchiOBHm_Chr1g0381781
rosa_laevigata	RLG00000026206
rosa_multiflora	Rmu_sc0031098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278460
rosa_rugosa	Rorug01G0430900
rosa_samantha	Rh1AG454300 Rh1BG411700 Rh1CG425900 Rh1DG009300 Rh1DG443600 Rh2AG143300 Rh2BG148500 Rh3DG348400 Rh4BG131200 Rh5AG031700 Rh5AG441500 Rh5CG034400
rosa_wichuraiana	Rw1G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	94
AgsI	TTSAA	1 cut(s)	141
AhlI	ACTAGT	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	309
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	239
ApoI	RAATTY	1 cut(s)	337
Asp700I	GAANNNNTTC	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	59
AsuII	TTCGAA	1 cut(s)	91
AsuNHI	GCTAGC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	162
BccI	CCATC	3 cut(s)	135, 179, 327
BciT130I	CCWGG	1 cut(s)	311
BclI	TGATCA	2 cut(s)	39, 367
BcuI	ACTAGT	1 cut(s)	26
BfaI	CTAG	3 cut(s)	17, 27, 246
Bme1390I	CCNGG	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	311
BmsI	GCATC	1 cut(s)	268
BmtI	GCTAGC	1 cut(s)	20
Bpu14I	TTCGAA	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	234
BsaBI	GATNNNNATC	1 cut(s)	282
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	282
BseBI	CCWGG	1 cut(s)	311
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	2 cut(s)	127, 338
BseJI	GATNNNNATC	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	337
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	162
BslI	CCNNNNNNNGG	1 cut(s)	94
Bsp119I	TTCGAA	1 cut(s)	91
Bsp1286I	GDGCHC	2 cut(s)	162, 259
Bsp143I	GATC	4 cut(s)	39, 231, 343, 367
Bsp19I	CCATGG	1 cut(s)	163
BspCNI	CTCAG	1 cut(s)	336
BspDI	ATCGAT	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	256
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	239
BspT104I	TTCGAA	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	4 cut(s)	39, 231, 343, 367
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	311
BstBI	TTCGAA	1 cut(s)	91
BstC8I	GCNNGC	2 cut(s)	18, 358
BstDEI	CTNAG	2 cut(s)	179, 323
BstDSI	CCRYGG	1 cut(s)	163
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	127, 338
BstKTI	GATC	4 cut(s)	42, 234, 346, 370
BstMBI	GATC	4 cut(s)	39, 231, 343, 367
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 278
BstNI	CCWGG	1 cut(s)	311
BstNSI	RCATGY	1 cut(s)	360
BstSCI	CCNGG	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	234
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	2 cut(s)	127, 338
Cac8I	GCNNGC	2 cut(s)	18, 358
ClaI	ATCGAT	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	164, 251, 357
CviJI	RGCY	5 cut(s)	11, 20, 98, 257, 322
CviKI_1	RGCY	5 cut(s)	11, 20, 98, 257, 322
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	179, 323
DpnI	GATC	4 cut(s)	41, 233, 345, 369
DpnII	GATC	4 cut(s)	39, 231, 343, 367
Eco130I	CCWWGG	1 cut(s)	163
Eco24I	GRGCYC	1 cut(s)	259
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	309
EcoT14I	CCWWGG	1 cut(s)	163
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	3 cut(s)	167, 254, 360
FaiI	YATR	6 cut(s)	14, 61, 120, 165, 252, 358
FatI	CATG	3 cut(s)	163, 250, 356
FbaI	TGATCA	2 cut(s)	39, 367
FokI	GGATG	2 cut(s)	114, 345
FriOI	GRGCYC	1 cut(s)	259
FspBI	CTAG	3 cut(s)	17, 27, 246
Hin1II	CATG	3 cut(s)	167, 254, 360
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	2 cut(s)	191, 292
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	2 cut(s)	191, 292
HpyAV	CCTTC	2 cut(s)	98, 113
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 278
HpyF3I	CTNAG	2 cut(s)	179, 323
Hsp92II	CATG	3 cut(s)	167, 254, 360
Ksp22I	TGATCA	2 cut(s)	39, 367
Kzo9I	GATC	4 cut(s)	39, 231, 343, 367
LmnI	GCTCC	2 cut(s)	165, 254
LpnPI	CCDG	3 cut(s)	296, 323, 378
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	3 cut(s)	17, 27, 246
MalI	GATC	4 cut(s)	41, 233, 345, 369
MboI	GATC	4 cut(s)	39, 231, 343, 367
MhlI	GDGCHC	2 cut(s)	162, 259
MluCI	AATT	4 cut(s)	115, 133, 337, 394
MmeI	TCCRAC	1 cut(s)	11
MnlI	CCTC	2 cut(s)	271, 371
MroXI	GAANNNNTTC	1 cut(s)	97
MseI	TTAA	2 cut(s)	75, 222
MspR9I	CCNGG	1 cut(s)	311
MvaI	CCWGG	1 cut(s)	311
MwoI	GCNNNNNNNGC	2 cut(s)	17, 278
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	4 cut(s)	39, 231, 343, 367
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	3 cut(s)	167, 254, 360
NlaIV	GGNNCC	1 cut(s)	256
NspI	RCATGY	1 cut(s)	360
NspV	TTCGAA	1 cut(s)	91
PaeI	GCATGC	1 cut(s)	360
PdmI	GAANNNNTTC	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	309
PspN4I	GGNNCC	1 cut(s)	256
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	75, 222
Sau3AI	GATC	4 cut(s)	39, 231, 343, 367
ScrFI	CCNGG	1 cut(s)	311
SduI	GDGCHC	2 cut(s)	162, 259
SetI	ASST	2 cut(s)	22, 90
SfaNI	GCATC	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	91
SpeI	ACTAGT	1 cut(s)	26
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	4 cut(s)	115, 133, 337, 394
SspMI	CTAG	3 cut(s)	17, 27, 246
StyD4I	CCNGG	1 cut(s)	309
StyI	CCWWGG	1 cut(s)	163
TaqI	TCGA	2 cut(s)	91, 234
TasI	AATT	4 cut(s)	115, 133, 337, 394
Tru1I	TTAA	2 cut(s)	75, 222
Tru9I	TTAA	2 cut(s)	75, 222
TspDTI	ATGAA	1 cut(s)	17
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	3 cut(s)	17, 27, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.