Rw1G039650

Exonuclease mut-7 homolog

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Forward (+)
67155521 .. 67158853
3333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G039650.1

Sequence Viewer

Length: 1533 bp
ATGGATCCCCAAAACCCAATGCCCCTGAAAACCCACTCGGTCTCCTCCACCGATTCTCCCGAGTTCACTCACCTAACCTCCTCCCTGACTCGCTCCACCATCATTGCCCTCGACGCCGAGTGGAAGCCCCTCCGCTCCCACCACCCCACTTACCCAACCGTCTCTCTCCTCCAACTCGCCTGCCAACTCGGCGACGACTCTGTCGTCGTCTTCCTGCTCGACTTGGCCTCCGTCCCTCTGCCTTCAATATGGGTTCTGCTGAGGGACGCGTTTGTGAACCCTGATGTTCTGAAACTGGGTTTCAGGTTTAAGCAGGATTTGGTTTACTTGTCGTCCACTTTCAGCTCTCAGGGTTGTGATCCTGGGTTTGATAGGGTGGAGCCATATTTGGATATTACGAGCATATACCAGCATCTGCAACAGAAGCAACATGGGAAGAAGACACCAAAGGAAACCAAGAGTTTGGCAACTATCTGCAAAGAACTCCTTGGCATTTCTCTTTCAAAGGAACTACAATGTAGTGATTGGTCATGTCGCCCTCTTACAGAAGAGCAGAAAACATATGCAGCTATGGATGCACATTGCTTGCTTGAAATATTCAATGTCTTCCGAGTGAAAGTCATTAAGGAAGGGATCTTAGTTCACTCTCCTTCTGAACCACATCCCGCCATTGTGAACCTTGGGTTGAAACAAGTTCTTGAGAAGCTTGATATATGTAATAAAGTTGTAAGGATGAAATTTTGTGAAGCCGTAGATATGGTCCGAGCTACTGATGTTTCTAATGATATAACTACTGTAGAGGGAACAGCTATTATGACACAGCATAGGAATACCCAGCCTATGGATGAATTTCTCTTGAAGGTTGTAAGCAGATATGGGGAAAAGATTTTATTGGGAGAATCTGATAAGAAAGCCAAAGCTAGCAAAAGAAAAGGCAAAAGACGGTCATCAGTGGGTTTCAAGCAAGGACATTATTTTGATGATTGGAAAGGTCCTGCACCATGGGATTTGACTGTAGGGGGTGATGGACATCCGAAGTTTTTATGTGATGTGATGGTCGAAGGCTTAGCTAAACATTTAAGATGTGTTGGGATCGATGCTGCAAGCCCATATTCGAAAAAGCCTGAATCCAGGGAATTAATAGATCATGCAAATAGAGAGAAAAGAGTGCTCTTGACGCGGGATGCTAAGCTACTTAGATACGAGTATCTAATCAAAAATCAAATATATAGGGTGAAGAGTCTTCTCAAGAATGAACAGCTACTTGAGGTAATTGAAACTTTCCAACTGAAAGTTAGTGAAGATCAGCTGATGTCAAGATGCACCAGATGCAATGGTAGGTTTATTCAAAAGCCCTTGACGACTGAAGAAGCTGTGGAAGCTGCAAAAGGTTTCCAAAGAATCCCTAACTGCTTGTTTGATAAGAATCTACAGTTTTGGCAATGCATGGACTGCAACCAGCTTTACTGGGAGGGAACTCAGTACCACAATGCAGTTCAGAAGTTCATTGATGTCTGCAAGTTGAACGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

58.09

Weight (kDa)

8.34

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_A_exo1 PF01612 16 - 207 1.1e-23 3'-5' exonuclease
Mut7-C PF01927 345 - 501 2.5e-39 Mut7-C RNAse domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 200, 203
AccB7I CCANNNNNTGG 1 cut(s) 841
AccBSI CCGCTC 1 cut(s) 135
AccII CGCG 2 cut(s) 269, 1180
AciI CCGC 3 cut(s) 133, 666, 1180
AclWI GGATC 4 cut(s) 12, 353, 641, 1100
AcsI RAATTY 2 cut(s) 737, 848
AcuI CTGAAG 1 cut(s) 1386
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 1484
AfiI CCNNNNNNNGG 1 cut(s) 841
AflIII ACRYGT 1 cut(s) 267
AjnI CCWGG 2 cut(s) 361, 1130
Alw21I GWGCWC 1 cut(s) 1173
Alw26I GTCTC 2 cut(s) 46, 166
AlwI GGATC 4 cut(s) 12, 353, 641, 1100
AlwNI CAGNNNCTG 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 59
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 3 cut(s) 566, 1100, 1382
ApoI RAATTY 2 cut(s) 737, 848
AseI ATTAAT 1 cut(s) 1139
AspS9I GGNCC 2 cut(s) 760, 992
AsuHPI GGTGA 3 cut(s) 62, 1034, 1246
AsuII TTCGAA 1 cut(s) 1115
AsuNHI GCTAGC 1 cut(s) 920
AvaI CYCGRG 1 cut(s) 59
AvaII GGWCC 2 cut(s) 760, 992
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 4 cut(s) 202, 446, 598, 1235
Bbv12I GWGCWC 1 cut(s) 1173
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 3 cut(s) 578, 1087, 1369
BccI CCATC 3 cut(s) 107, 1019, 1048
BceAI ACGGC 1 cut(s) 734
BciT130I CCWGG 2 cut(s) 363, 1132
BcoDI GTCTC 2 cut(s) 46, 166
BfaI CTAG 1 cut(s) 921
BfmI CTRYAG 3 cut(s) 795, 1014, 1430
BglI GCCNNNNNGGC 1 cut(s) 189
BisI GCNGC 3 cut(s) 567, 1101, 1383
BlpI GCTNAGC 2 cut(s) 1066, 1188
BlsI GCNGC 3 cut(s) 568, 1102, 1384
Bme1390I CCNGG 2 cut(s) 363, 1132
Bme18I GGWCC 2 cut(s) 760, 992
BmeT110I CYCGRG 1 cut(s) 59
BmgT120I GGNCC 2 cut(s) 760, 992
BmiI GGNNCC 2 cut(s) 6, 381
BmrFI CCNGG 2 cut(s) 363, 1132
BmrI ACTGGG 2 cut(s) 305, 1477
BmsI GCATC 6 cut(s) 421, 565, 1087, 1174, 1310, 1319
BmtI GCTAGC 1 cut(s) 924
BmuI ACTGGG 2 cut(s) 305, 1477
BpiI GAAGAC 4 cut(s) 202, 446, 598, 1235
Bpu10I CCTNAGC 1 cut(s) 260
Bpu1102I GCTNAGC 2 cut(s) 1066, 1188
Bpu14I TTCGAA 1 cut(s) 1115
BpuEI CTTGAG 3 cut(s) 719, 1232, 1286
Bsa29I ATCGAT 1 cut(s) 1095
BsaBI GATNNNNATC 2 cut(s) 1029, 1425
BsaHI GRCGYC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 46
BsaJI CCNNGG 5 cut(s) 362, 487, 679, 1001, 1131
BsaXI ACNNNNNCTCC 8 cut(s) 26, 40, 56, 62, 70, 92, 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 841
Bse1I ACTGG 2 cut(s) 300, 1472
Bse3DI GCAATG 4 cut(s) 102, 580, 1339, 1448
Bse8I GATNNNNATC 2 cut(s) 1029, 1425
BseBI CCWGG 2 cut(s) 363, 1132
BseCI ATCGAT 1 cut(s) 1095
BseDI CCNNGG 5 cut(s) 362, 487, 679, 1001, 1131
BseGI GGATG 6 cut(s) 580, 661, 738, 850, 1030, 1189
BseJI GATNNNNATC 2 cut(s) 1029, 1425
BseLI CCNNNNNNNGG 1 cut(s) 841
BseMI GCAATG 4 cut(s) 102, 580, 1339, 1448
BseMII CTCAG 3 cut(s) 251, 362, 1493
BseNI ACTGG 2 cut(s) 300, 1472
BseRI GAGGAG 3 cut(s) 34, 70, 158
BseXI GCAGC 3 cut(s) 578, 1087, 1369
BseYI CCCAGC 1 cut(s) 834
BsgI GTGCAG 1 cut(s) 981
Bsh1236I CGCG 2 cut(s) 269, 1180
BshFI GGCC 1 cut(s) 227
BshVI ATCGAT 1 cut(s) 1095
BsiHKAI GWGCWC 1 cut(s) 1173
BsiHKCI CYCGRG 1 cut(s) 59
BslFI GGGAC 2 cut(s) 218, 278
BslI CCNNNNNNNGG 1 cut(s) 841
BsmAI GTCTC 2 cut(s) 46, 166
BsmBI CGTCTC 1 cut(s) 166
BsmFI GGGAC 2 cut(s) 218, 278
BsnI GGCC 1 cut(s) 227
Bso31I GGTCTC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 59
Bsp119I TTCGAA 1 cut(s) 1115
Bsp1286I GDGCHC 1 cut(s) 1173
Bsp143I GATC 6 cut(s) 4, 358, 633, 1092, 1144, 1303
Bsp1720I GCTNAGC 2 cut(s) 1066, 1188
Bsp19I CCATGG 1 cut(s) 1001
BspACI CCGC 3 cut(s) 133, 666, 1180
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 3 cut(s) 252, 361, 1492
BspDI ATCGAT 1 cut(s) 1095
BspFNI CGCG 2 cut(s) 269, 1180
BspLI GGNNCC 2 cut(s) 6, 381
BspOI GCTAGC 1 cut(s) 924
BspPI GGATC 4 cut(s) 12, 353, 641, 1100
BspQI GCTCTTC 1 cut(s) 543
BspT104I TTCGAA 1 cut(s) 1115
BspTNI GGTCTC 1 cut(s) 46
BsrBI CCGCTC 1 cut(s) 135
BsrDI GCAATG 4 cut(s) 102, 580, 1339, 1448
BsrI ACTGG 2 cut(s) 300, 1472
BssECI CCNNGG 5 cut(s) 362, 487, 679, 1001, 1131
BssMI GATC 6 cut(s) 4, 358, 633, 1092, 1144, 1303
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 3 cut(s) 487, 679, 1001
Bst2UI CCWGG 2 cut(s) 363, 1132
Bst4CI ACNGT 5 cut(s) 160, 796, 945, 1015, 1434
Bst6I CTCTTC 2 cut(s) 543, 1232
BstACI GRCGYC 1 cut(s) 114
BstAPI GCANNNNNTGC 2 cut(s) 1329, 1452
BstBI TTCGAA 1 cut(s) 1115
BstC8I GCNNGC 4 cut(s) 181, 587, 922, 1105
BstDEI CTNAG 7 cut(s) 260, 348, 637, 1066, 1188, 1196, 1479
BstDSI CCRYGG 1 cut(s) 1001
BstF5I GGATG 6 cut(s) 580, 661, 738, 850, 1030, 1189
BstFNI CGCG 2 cut(s) 269, 1180
BstKTI GATC 6 cut(s) 7, 361, 636, 1095, 1147, 1306
BstMAI GTCTC 2 cut(s) 46, 166
BstMBI GATC 6 cut(s) 4, 358, 633, 1092, 1144, 1303
BstMWI GCNNNNNNNGC 8 cut(s) 113, 189, 424, 575, 1177, 1329, 1379, 1452
BstNI CCWGG 2 cut(s) 363, 1132
BstSCI CCNGG 2 cut(s) 361, 1130
BstSFI CTRYAG 3 cut(s) 795, 1014, 1430
BstUI CGCG 2 cut(s) 269, 1180
BstV1I GCAGC 3 cut(s) 578, 1087, 1369
BstV2I GAAGAC 4 cut(s) 202, 446, 598, 1235
BstX2I RGATCY 2 cut(s) 4, 633
BstXI CCANNNNNNTGG 1 cut(s) 463
BstYI RGATCY 2 cut(s) 4, 633
Bsu15I ATCGAT 1 cut(s) 1095
BsuRI GGCC 1 cut(s) 227
BsuTUI ATCGAT 1 cut(s) 1095
BtgI CCRYGG 1 cut(s) 1001
BtsCI GGATG 6 cut(s) 580, 661, 738, 850, 1030, 1189
BtsIMutI CAGTG 1 cut(s) 957
Cac8I GCNNGC 4 cut(s) 181, 587, 922, 1105
CaiI CAGNNNCTG 1 cut(s) 415
Cfr13I GGNCC 2 cut(s) 760, 992
ClaI ATCGAT 1 cut(s) 1095
CseI GACGC 3 cut(s) 122, 275, 1186
Csp6I GTAC 1 cut(s) 1483
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 5 cut(s) 431, 531, 1002, 1148, 1447
CviQI GTAC 1 cut(s) 1483
DdeI CTNAG 7 cut(s) 260, 348, 637, 1066, 1188, 1196, 1479
DpnI GATC 6 cut(s) 6, 360, 635, 1094, 1146, 1305
DpnII GATC 6 cut(s) 4, 358, 633, 1092, 1144, 1303
DrdI GACNNNNNNGTC 2 cut(s) 200, 203
DseDI GACNNNNNNGTC 2 cut(s) 200, 203
Eam1104I CTCTTC 2 cut(s) 543, 1232
EarI CTCTTC 2 cut(s) 543, 1232
Eco130I CCWWGG 3 cut(s) 487, 679, 1001
Eco31I GGTCTC 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 760, 992
Eco57I CTGAAG 1 cut(s) 1386
Eco88I CYCGRG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 992
EcoRII CCWGG 2 cut(s) 361, 1130
EcoT14I CCWWGG 3 cut(s) 487, 679, 1001
EcoT22I ATGCAT 1 cut(s) 1448
ErhI CCWWGG 3 cut(s) 487, 679, 1001
Esp3I CGTCTC 1 cut(s) 166
FaeI CATG 5 cut(s) 434, 534, 1005, 1151, 1450
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 2 cut(s) 218, 278
FatI CATG 5 cut(s) 430, 530, 1001, 1147, 1446
FauI CCCGC 2 cut(s) 673, 1173
FauNDI CATATG 1 cut(s) 562
Fnu4HI GCNGC 3 cut(s) 567, 1101, 1383
FokI GGATG 6 cut(s) 587, 648, 745, 857, 1017, 1196
Fsp4HI GCNGC 3 cut(s) 567, 1101, 1383
FspBI CTAG 1 cut(s) 921
GluI GCNGC 3 cut(s) 567, 1101, 1383
GsaI CCCAGC 1 cut(s) 838
HaeIII GGCC 1 cut(s) 227
HgaI GACGC 3 cut(s) 122, 275, 1186
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 5 cut(s) 434, 534, 1005, 1151, 1450
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 8 cut(s) 53, 88, 197, 899, 1127, 1240, 1401, 1426
HphI GGTGA 3 cut(s) 62, 1034, 1246
Hpy166II GTNNAC 6 cut(s) 66, 277, 325, 336, 643, 676
Hpy188I TCNGA 7 cut(s) 291, 611, 655, 764, 904, 1035, 1500
Hpy188III TCNNGA 6 cut(s) 59, 698, 856, 1174, 1249, 1317
Hpy8I GTNNAC 6 cut(s) 66, 277, 325, 336, 643, 676
Hpy99I CGWCG 3 cut(s) 116, 197, 209
HpyAV CCTTC 5 cut(s) 252, 623, 660, 853, 1055
HpyCH4III ACNGT 5 cut(s) 160, 796, 945, 1015, 1434
HpyF10VI GCNNNNNNNGC 8 cut(s) 113, 189, 424, 575, 1177, 1329, 1379, 1452
HpyF3I CTNAG 7 cut(s) 260, 348, 637, 1066, 1188, 1196, 1479
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 5 cut(s) 434, 534, 1005, 1151, 1450
Kzo9I GATC 6 cut(s) 4, 358, 633, 1092, 1144, 1303
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 3 cut(s) 98, 140, 379
Lsp1109I GCAGC 3 cut(s) 578, 1087, 1369
LweI GCATC 6 cut(s) 421, 565, 1087, 1174, 1310, 1319
MaeI CTAG 1 cut(s) 921
MalI GATC 6 cut(s) 6, 360, 635, 1094, 1146, 1305
MbiI CCGCTC 1 cut(s) 135
MboI GATC 6 cut(s) 4, 358, 633, 1092, 1144, 1303
MboII GAAGA 9 cut(s) 202, 448, 451, 560, 598, 1235, 1249, 1313, 1379
MflI RGATCY 2 cut(s) 4, 633
MhlI GDGCHC 1 cut(s) 1173
MluCI AATT 4 cut(s) 737, 848, 1136, 1272
MluI ACGCGT 1 cut(s) 267
MlyI GAGTC 3 cut(s) 82, 191, 1249
MmeI TCCRAC 2 cut(s) 196, 1309
Mph1103I ATGCAT 1 cut(s) 1448
MseI TTAA 4 cut(s) 309, 624, 1079, 1139
MspA1I CMGCKG 1 cut(s) 1309
MspR9I CCNGG 2 cut(s) 363, 1132
MvaI CCWGG 2 cut(s) 363, 1132
MvnI CGCG 2 cut(s) 269, 1180
MwoI GCNNNNNNNGC 8 cut(s) 113, 189, 424, 575, 1177, 1329, 1379, 1452
NcoI CCATGG 1 cut(s) 1001
NdeI CATATG 1 cut(s) 562
NdeII GATC 6 cut(s) 4, 358, 633, 1092, 1144, 1303
NheI GCTAGC 1 cut(s) 920
NlaIII CATG 5 cut(s) 434, 534, 1005, 1151, 1450
NlaIV GGNNCC 2 cut(s) 6, 381
NmeAIII GCCGAG 2 cut(s) 142, 168
NsiI ATGCAT 1 cut(s) 1448
NspV TTCGAA 1 cut(s) 1115
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 5 cut(s) 53, 899, 1127, 1401, 1426
PflFI GACNNNGTC 1 cut(s) 200
PflMI CCANNNNNTGG 1 cut(s) 841
PkrI GCNGC 3 cut(s) 568, 1102, 1384
PleI GAGTC 3 cut(s) 82, 191, 1248
PpsI GAGTC 3 cut(s) 82, 191, 1248
PpuMI RGGWCCY 1 cut(s) 992
PshBI ATTAAT 1 cut(s) 1139
Psp5II RGGWCCY 1 cut(s) 992
Psp6I CCWGG 2 cut(s) 361, 1130
PspFI CCCAGC 1 cut(s) 834
PspGI CCWGG 2 cut(s) 361, 1130
PspN4I GGNNCC 2 cut(s) 6, 381
PspPI GGNCC 2 cut(s) 760, 992
PspPPI RGGWCCY 1 cut(s) 992
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 2 cut(s) 4, 633
PsyI GACNNNGTC 1 cut(s) 200
PvuII CAGCTG 1 cut(s) 1309
RsaI GTAC 1 cut(s) 1484
RsaNI GTAC 1 cut(s) 1483
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 4 cut(s) 309, 624, 1079, 1139
SatI GCNGC 3 cut(s) 567, 1101, 1383
Sau3AI GATC 6 cut(s) 4, 358, 633, 1092, 1144, 1303
Sau96I GGNCC 2 cut(s) 760, 992
SchI GAGTC 3 cut(s) 82, 191, 1249
ScrFI CCNGG 2 cut(s) 363, 1132
SduI GDGCHC 1 cut(s) 1173
SfaNI GCATC 6 cut(s) 421, 565, 1087, 1174, 1310, 1319
SfcI CTRYAG 3 cut(s) 795, 1014, 1430
SfuI TTCGAA 1 cut(s) 1115
SinI GGWCC 2 cut(s) 760, 992
SmlI CTYRAG 3 cut(s) 698, 1247, 1265
SmoI CTYRAG 3 cut(s) 698, 1247, 1265
Sse9I AATT 4 cut(s) 737, 848, 1136, 1272
SsiI CCGC 3 cut(s) 133, 666, 1180
SspI AATATT 1 cut(s) 597
SspMI CTAG 1 cut(s) 921
StyD4I CCNGG 2 cut(s) 361, 1130
StyI CCWWGG 3 cut(s) 487, 679, 1001
TaaI ACNGT 5 cut(s) 160, 796, 945, 1015, 1434
TaqI TCGA 5 cut(s) 111, 219, 1059, 1095, 1115
TaqII GACCGA 1 cut(s) 28
TasI AATT 4 cut(s) 737, 848, 1136, 1272
TfiI GAWTC 5 cut(s) 53, 899, 1127, 1401, 1426
Tru1I TTAA 4 cut(s) 309, 624, 1079, 1139
Tru9I TTAA 4 cut(s) 309, 624, 1079, 1139
TscAI CASTG 1 cut(s) 957
TseI GCWGC 3 cut(s) 566, 1100, 1382
TspDTI ATGAA 4 cut(s) 749, 861, 1269, 1495
TspGWI ACGGA 1 cut(s) 220
TspRI CASTG 1 cut(s) 957
Tth111I GACNNNGTC 1 cut(s) 200
Van91I CCANNNNNTGG 1 cut(s) 841
VpaK11BI GGWCC 2 cut(s) 760, 992
VspI ATTAAT 1 cut(s) 1139
XapI RAATTY 2 cut(s) 737, 848
XspI CTAG 1 cut(s) 921
Zsp2I ATGCAT 1 cut(s) 1448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.