Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0005335

Physical Location & Seq

Genomic Coordinates Reverse (-)

22056788 .. 22061276

Gene Structure 4489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG131200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 584 bp

ATGGATCCCCAAAACCCAATGCCCCTGAAAACCCACTTGGTCTCCTCCACCGATTCTCCCGAGTTCACTCACCTGATATCCTCCTTGACTCGCTCCACCATCATTGCCCTGGACGCCGAGTGGAAGCCCCTCCGCTCCCACCACCCCACTTACCCAACCGTCTCTCTCCTCCAACTCGCCTGCCAACTCGCCGCCGGCGACGACTCGGTCGTTGTGTTCCTGCTCGACTTGGCCTCCGTCCCTCTGCCTTCAATCTGGGTTCTGCTGAGGGACGCGTTTGTTAACCCTGATGTTCTGAAACTGAGTTTCAGGTGCTGTCCAAAAATTCTGAGCTTGCCTAGTGATGGACTACCAGCTTCACTTGAGTCTTTCATAGTAATAGATTGCCCAGAACTGAAAGAATGGTGCTGCATGACGGAAGGTGAAGATTGGAGGAAGATATGCCATCTCCCTAGCATATGGCTTGATTGTGAAGAGGAAAGATGTGCAGTTGAAGATTTCTATGTGAATTTGGTGGATGCTGTACCAGATCTTATAGAGCAAATTCATAGGAAAACTGCAAGATTGCTCCTCCATATTAACGG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 Mut7-C

Protein Analysis

194

Amino Acids

21.87

Weight (kDa)

4.85

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24340 AT5G24340
fragaria_vesca	FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160
malus_domestica	MD07G1295100.v1.1
prunus_persica	Prupe.2G314700_v2.0.a1
pyrus_communis	pycom07g26770
rosa_chinensis	RchiOBHm_Chr1g0381781
rosa_laevigata	RLG00000026206
rosa_multiflora	Rmu_sc0031098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278460
rosa_rugosa	Rorug01G0430900
rosa_samantha	Rh1AG454300 Rh1BG411700 Rh1CG425900 Rh1DG009300 Rh1DG443600 Rh2AG143300 Rh2BG148500 Rh3DG348400 Rh4BG131200 Rh5AG031700 Rh5AG441500 Rh5CG034400
rosa_wichuraiana	Rw1G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	1 cut(s)	275
AciI	CCGC	2 cut(s)	133, 192
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	3 cut(s)	324, 508, 543
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	1 cut(s)	344
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	2 cut(s)	252, 494
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	2 cut(s)	333, 356
AluI	AGCT	2 cut(s)	333, 356
Alw26I	GTCTC	2 cut(s)	46, 166
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	1 cut(s)	231
ApeKI	GCWGC	1 cut(s)	408
ApoI	RAATTY	3 cut(s)	324, 508, 543
AsuHPI	GGTGA	2 cut(s)	62, 434
AvaI	CYCGRG	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	4
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	3 cut(s)	107, 338, 453
BciT130I	CCWGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	46, 166
BfaI	CTAG	2 cut(s)	339, 453
BglII	AGATCT	1 cut(s)	529
BisI	GCNGC	2 cut(s)	192, 409
BlsI	GCNGC	2 cut(s)	193, 410
Bme1390I	CCNGG	1 cut(s)	110
BmeT110I	CYCGRG	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	508
Bpu10I	CCTNAGC	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	108
BsaXI	ACNNNNNCTCC	6 cut(s)	26, 40, 56, 70, 218, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	344
Bse118I	RCCGGY	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	344
BseMI	GCAATG	1 cut(s)	102
BseMII	CTCAG	3 cut(s)	257, 293, 320
BseRI	GAGGAG	3 cut(s)	34, 158, 560
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	1 cut(s)	507
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	233
BsiEI	CGRYCG	1 cut(s)	210
BsiHKCI	CYCGRG	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	224, 284
BslI	CCNNNNNNNGG	1 cut(s)	344
BsmAI	GTCTC	2 cut(s)	46, 166
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	2 cut(s)	224, 284
BsnI	GGCC	1 cut(s)	233
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	59
Bsp143I	GATC	2 cut(s)	4, 529
BspACI	CCGC	2 cut(s)	133, 192
BspANI	GGCC	1 cut(s)	233
BspCNI	CTCAG	3 cut(s)	258, 294, 321
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BspTNI	GGTCTC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	4, 529
BssNI	GRCGYC	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	468
BstACI	GRCGYC	1 cut(s)	114
BstC8I	GCNNGC	3 cut(s)	181, 196, 335
BstDEI	CTNAG	3 cut(s)	266, 302, 329
BstF5I	GGATG	1 cut(s)	523
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	7, 532
BstMAI	GTCTC	2 cut(s)	46, 166
BstMBI	GATC	2 cut(s)	4, 529
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	395
BstX2I	RGATCY	2 cut(s)	4, 529
BstYI	RGATCY	2 cut(s)	4, 529
BsuRI	GGCC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	523
Cac8I	GCNNGC	3 cut(s)	181, 196, 335
CaiI	CAGNNNCTG	1 cut(s)	315
Cfr10I	RCCGGY	1 cut(s)	194
CseI	GACGC	2 cut(s)	122, 281
Csp6I	GTAC	1 cut(s)	524
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	1 cut(s)	412
CviJI	RGCY	5 cut(s)	127, 233, 333, 356, 463
CviKI_1	RGCY	5 cut(s)	127, 233, 333, 356, 463
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	3 cut(s)	266, 302, 329
DpnI	GATC	2 cut(s)	6, 531
DpnII	GATC	2 cut(s)	4, 529
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Eco31I	GGTCTC	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	166
FaeI	CATG	1 cut(s)	415
FaiI	YATR	9 cut(s)	374, 413, 442, 458, 460, 504, 536, 549, 576
FaqI	GGGAC	2 cut(s)	224, 284
FatI	CATG	1 cut(s)	411
FauNDI	CATATG	1 cut(s)	458
Fnu4HI	GCNGC	2 cut(s)	192, 409
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	2 cut(s)	192, 409
FspBI	CTAG	2 cut(s)	339, 453
GluI	GCNGC	2 cut(s)	192, 409
HaeIII	GGCC	1 cut(s)	233
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	2 cut(s)	122, 281
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	4 cut(s)	53, 88, 203, 365
HpaI	GTTAAC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	2 cut(s)	62, 434
Hpy166II	GTNNAC	2 cut(s)	66, 283
Hpy188I	TCNGA	2 cut(s)	297, 330
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	2 cut(s)	66, 283
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	2 cut(s)	258, 413
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	3 cut(s)	411, 488, 560
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	3 cut(s)	266, 302, 329
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	415
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	4, 529
LmnI	GCTCC	3 cut(s)	98, 140, 573
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	2 cut(s)	339, 453
MalI	GATC	2 cut(s)	6, 531
MbiI	CCGCTC	1 cut(s)	135
MboI	GATC	2 cut(s)	4, 529
MboII	GAAGA	4 cut(s)	437, 448, 485, 506
MflI	RGATCY	2 cut(s)	4, 529
MluCI	AATT	3 cut(s)	324, 508, 543
MluI	ACGCGT	1 cut(s)	273
MlyI	GAGTC	3 cut(s)	82, 197, 374
MmeI	TCCRAC	1 cut(s)	196
MreI	CGCCGGCG	1 cut(s)	194
MroNI	GCCGGC	1 cut(s)	194
MseI	TTAA	2 cut(s)	282, 579
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	110
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	1 cut(s)	113
NaeI	GCCGGC	1 cut(s)	196
NdeI	CATATG	1 cut(s)	458
NdeII	GATC	2 cut(s)	4, 529
NgoMIV	GCCGGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	415
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 207
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	206
PkrI	GCNGC	2 cut(s)	193, 410
PleI	GAGTC	3 cut(s)	82, 197, 373
PpsI	GAGTC	3 cut(s)	82, 197, 373
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	315
PsuI	RGATCY	2 cut(s)	4, 529
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SaqAI	TTAA	2 cut(s)	282, 579
SatI	GCNGC	2 cut(s)	192, 409
Sau3AI	GATC	2 cut(s)	4, 529
SchI	GAGTC	3 cut(s)	82, 197, 374
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	5 cut(s)	75, 314, 335, 358, 424
SfaNI	GCATC	1 cut(s)	508
SgrAI	CRCCGGYG	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	324, 508, 543
SsiI	CCGC	2 cut(s)	133, 192
SspMI	CTAG	2 cut(s)	339, 453
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	225
TaqII	GACCGA	1 cut(s)	196
TasI	AATT	3 cut(s)	324, 508, 543
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	2 cut(s)	282, 579
Tru9I	TTAA	2 cut(s)	282, 579
TseI	GCWGC	1 cut(s)	408
TspDTI	ATGAA	2 cut(s)	361, 536
TspGWI	ACGGA	2 cut(s)	226, 431
Tth111I	GACNNNGTC	1 cut(s)	206
XapI	RAATTY	3 cut(s)	324, 508, 543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XspI	CTAG	2 cut(s)	339, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.