Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005335

Physical Location & Seq

Genomic Coordinates Forward (+)

53326202 .. 53335241

Gene Structure 9040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG411700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2346 bp

ATGGATCCCCAAAACCCAATGCCCCTGAAAACCCACTTGGTCTCCTCCACCGATTCTCCCGAGTTCACTCACCTAACCTCCTCCCTGACTCGCTCCACCATCATTGCCCTCGACGCCGAGTGGAAGCCCCTCCGCTCCCACCACCCCACTTACCCAACCGTCTCTCTCCTCCAACTCGCCTGCCAACTCGGCGACGACTCGGTCGTCGTCTTCCTGCTCGACTTGGCCTCCGTCCCTCTGCCTTCAATATGGGTTCTGCTGAGGGACGCGTTTGTGAACCCTGATGTTCTGAAACTGGGTTTCAGGTTTAAGCAGGATTTGGTTTACTTGTCGTCCACTTTCAGCTCTCAGGGTTGTGATCCTGGGTTTGATAGGGTGGAGCCATATTTGGATATTACAAGCATATACCAGCATCTGCAACAGAAGCAACATGGGAAGAAGACACCAAAGGAAACCAAGAGTTTGGCAACTATCTGCAAAGAACTCCTTGGCATTTCTCTTTCAAAGGAACTACAATGTAGTGATTGGTCATGTCGCCCTCTTACAGAAGAGCAGAAAACATATGCAGCTATGGATGCACATTGCTTGCTTGAAATATTCAATGTCTTCCGAGTGAAAGTCATTAAGGAAGGGATCTTAGTTCACCCTCCTTCTGAACCACATCCCGCCACTGTGAACCTTGGGTTGAAACAAGTTCTTGAGAAGCTTGATATATGTAATAAAGTTGTAAGGATGAAATTTTGTGAAGCCGTAGATATGGTCCGAGCTACTGATGTTTCTAATGATATAACTACTGTAGAGGGAACAGCTATTATGACACAGCATAGGAATACCCAGCCTATGGATGAATTTCTCTTGAAGGTTGTAAGCAGATATGGGGAAAAGATTTTATTGGGAGAATCTGATAAGAAAGCCAAAGCTAGCAAAAGAAAAGGCAAAAGACGGTCATCAGTGGGTTTCAAGCAAGGACATTATTTTGATGATTGGAAAGGTCCCGCACCATGGGATTTGACTGTAGGGGGTGATGGACATCCGAAGTTTTTATGTGATGTGATGGTTGAAGGCTTAGCTAAACATTTAAGATGCGTTGGGATCGATGCTGCAAGCCCATATTCGAAAAAGCCTGAATCCAGGGAATTAATAGATCATGCAAATAGAGAGAAAAGAGTGCTCTTGACGCGGGATGCTAAGCTACTTAGATACGAGTATCTAATCAAAAATCAAATATATAGGGTGAAGAGTCTTCTCAAGAATGAACAGCTACTTGAGGTAATTGAAACTTTCCAACTGAAAGTTAGTGAAGATCAGCTGATGTCAAGATGCACCAGATGCAATGGTAGGTTTATTCAAAAGCCCTTGACGACTGAAGAAGCTGTGGAAGCTGCAAAAGGTTTCCAAAGAATCCCTAACTGCTTGTTTGATAAGAATCTACAGTTTTGGCAATGCATGGACTGCAACCAGCTTTACTGGGAGGGGATTGGAGTGGTTAAATCCATGGGAGTTGAAGTTTCTGATTCAAGGCCTATCTTAGAGAGAAGAGGAAGACCTCAGAAGGATCAAGCTTTGAATTGTCCAAGGTGCAACTCAACAACCACTAAATTCTGTTACTATAACAATTACAGTCTCTCTCAGCCAAGGTACTTCTGTAAGACTTGTAGAAGGTATTGGACTGAAGGTGGGTCTTTGAGAAATGTTCCAGTGGGTGGAGGCTCAAGGAAGAATAACAAGAGATCTTCAACTTCATCATCTTCGTCCCCATCAACTTCCAATTCATCTAAGAAGCTTGCTCATCATGATCTGGTGATGACCCAACAAAGTGCTGATTCTCAAAACCCTAAGATCCACCAAGGTCAAGATCTCAACCTAGCATACCCACCAACATCTGATCAGGACTATGATCATCATAGCATCTTTAACCCTAGCTCTTCTAGAATTAGTACTTCATCCCCTCATAATCTCTCAGCTATGGAGCTCCTCAAGAGTACTGGGATCAATGCATCAAGGGGATTAATGAACTCTTTCATGGCTCCCATATCTGTAGCAGATTCGAATACTATCACGATGTTCTCTACTGGTAATCATGGGTTTCCAAATTTGCAAGAATTTAAGCCAAGGCTCAGTTTTTCTCTTGATGGGTATGAGAGTGGCTATGGAAGTCTTCAAGGCGTTCAAGATGGTACTAGTCATCATCATGCAAGGCTCTTGTTTCCTACTGATCAGGATTTGAAGCAGATTCCAAGCAGTACTACTAATACTACTACAAGCACTGAATTTGAGCAAAATGGAGGGGAAGGAGATCATTCTGGTGTGTATTGGAATGGAATGTTAGGTGGAGGATCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_pol_A_exo1 Mut7-C

Protein Analysis

781

Amino Acids

87.63

Weight (kDa)

8.57

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	16 - 207	2.2e-23	3'-5' exonuclease
Mut7-C	PF01927	345 - 493	1.6e-36	Mut7-C RNAse domain
Zn_ribbon_Dof	PF02701	519 - 576	2.7e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24340 AT5G24340
fragaria_vesca	FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160 FvH4_7g32160
malus_domestica	MD07G1295100.v1.1
prunus_persica	Prupe.2G314700_v2.0.a1
pyrus_communis	pycom07g26770
rosa_chinensis	RchiOBHm_Chr1g0381781
rosa_laevigata	RLG00000026206
rosa_multiflora	Rmu_sc0031098.1_g000001
rosa_roxburghii	Rroxscaffold_4G00278460
rosa_rugosa	Rorug01G0430900
rosa_samantha	Rh1AG454300 Rh1BG411700 Rh1CG425900 Rh1DG009300 Rh1DG443600 Rh2AG143300 Rh2BG148500 Rh3DG348400 Rh4BG131200 Rh5AG031700 Rh5AG441500 Rh5CG034400
rosa_wichuraiana	Rw1G039650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	200, 203
AccB7I	CCANNNNNTGG	2 cut(s)	841, 1703
AccBSI	CCGCTC	1 cut(s)	135
AccII	CGCG	2 cut(s)	269, 1180
AciI	CCGC	4 cut(s)	133, 666, 996, 1180
AclWI	GGATC	8 cut(s)	12, 353, 641, 1100, 1563, 1834, 1997, 2344
AcsI	RAATTY	6 cut(s)	737, 848, 1598, 2092, 2102, 2270
AcuI	CTGAAG	2 cut(s)	1386, 1692
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	5 cut(s)	1640, 1939, 1984, 2179, 2245
AfiI	CCNNNNNNNGG	3 cut(s)	841, 1002, 1703
AflIII	ACRYGT	1 cut(s)	267
AhlI	ACTAGT	1 cut(s)	2180
AjnI	CCWGG	2 cut(s)	361, 1130
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
Alw21I	GWGCWC	2 cut(s)	1173, 1974
Alw26I	GTCTC	3 cut(s)	46, 166, 1628
AlwI	GGATC	8 cut(s)	12, 353, 641, 1100, 1563, 1834, 1997, 2344
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	59
AoxI	GGCC	2 cut(s)	225, 1520
ApeKI	GCWGC	3 cut(s)	566, 1100, 1382
ApoI	RAATTY	6 cut(s)	737, 848, 1598, 2092, 2102, 2270
AseI	ATTAAT	2 cut(s)	1139, 2009
Asp700I	GAANNNNTTC	1 cut(s)	2018
AspS9I	GGNCC	2 cut(s)	760, 992
AsuHPI	GGTGA	5 cut(s)	62, 635, 1034, 1246, 1813
AsuII	TTCGAA	2 cut(s)	1115, 2048
AsuNHI	GCTAGC	1 cut(s)	920
AvaI	CYCGRG	1 cut(s)	59
AvaII	GGWCC	2 cut(s)	760, 992
BaeI	ACNNNNGTAYC	2 cut(s)	1630, 1663
BamHI	GGATCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	1974
BbsI	GAAGAC	6 cut(s)	202, 446, 598, 1235, 1549, 2150
Bbv12I	GWGCWC	2 cut(s)	1173, 1974
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	3 cut(s)	578, 1087, 1369
BccI	CCATC	6 cut(s)	107, 1019, 1048, 1765, 2126, 2168
BceAI	ACGGC	1 cut(s)	734
BciT130I	CCWGG	2 cut(s)	363, 1132
BclI	TGATCA	3 cut(s)	1885, 1897, 2215
BcoDI	GTCTC	3 cut(s)	46, 166, 1628
BcuI	ACTAGT	1 cut(s)	2180
BfaI	CTAG	5 cut(s)	921, 1865, 1920, 1929, 2181
BfmI	CTRYAG	4 cut(s)	795, 1014, 1430, 2037
BglI	GCCNNNNNGGC	1 cut(s)	189
BglII	AGATCT	2 cut(s)	1730, 1855
BisI	GCNGC	3 cut(s)	567, 1101, 1383
BlpI	GCTNAGC	2 cut(s)	1066, 1188
BlsI	GCNGC	3 cut(s)	568, 1102, 1384
BmcAI	AGTACT	3 cut(s)	1939, 1984, 2245
Bme1390I	CCNGG	2 cut(s)	363, 1132
Bme18I	GGWCC	2 cut(s)	760, 992
BmeT110I	CYCGRG	1 cut(s)	59
BmgT120I	GGNCC	2 cut(s)	760, 992
BmiI	GGNNCC	4 cut(s)	6, 381, 994, 2028
BmrFI	CCNGG	2 cut(s)	363, 1132
BmrI	ACTGGG	3 cut(s)	305, 1477, 1995
BmsI	GCATC	9 cut(s)	421, 565, 1073, 1087, 1174, 1310, 1319, 1917, 2006
BmtI	GCTAGC	1 cut(s)	924
BmuI	ACTGGG	3 cut(s)	305, 1477, 1995
BpiI	GAAGAC	6 cut(s)	202, 446, 598, 1235, 1549, 2150
Bpu10I	CCTNAGC	1 cut(s)	260
Bpu1102I	GCTNAGC	2 cut(s)	1066, 1188
Bpu14I	TTCGAA	2 cut(s)	1115, 2048
BpuEI	CTTGAG	5 cut(s)	719, 1232, 1286, 1696, 1961
Bsa29I	ATCGAT	1 cut(s)	1095
BsaBI	GATNNNNATC	2 cut(s)	1029, 1425
BsaHI	GRCGYC	1 cut(s)	114
BsaI	GGTCTC	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	3 cut(s)	841, 1002, 1703
Bse1I	ACTGG	5 cut(s)	300, 1472, 1697, 1990, 2077
Bse3DI	GCAATG	4 cut(s)	102, 580, 1339, 1448
Bse8I	GATNNNNATC	2 cut(s)	1029, 1425
BseBI	CCWGG	2 cut(s)	363, 1132
BseCI	ATCGAT	1 cut(s)	1095
BseGI	GGATG	7 cut(s)	580, 661, 738, 850, 1030, 1189, 1943
BseJI	GATNNNNATC	2 cut(s)	1029, 1425
BseLI	CCNNNNNNNGG	3 cut(s)	841, 1002, 1703
BseMI	GCAATG	4 cut(s)	102, 580, 1339, 1448
BseMII	CTCAG	6 cut(s)	251, 362, 1562, 1643, 1974, 2131
BseNI	ACTGG	5 cut(s)	300, 1472, 1697, 1990, 2077
BseRI	GAGGAG	4 cut(s)	34, 70, 158, 1964
BseXI	GCAGC	3 cut(s)	578, 1087, 1369
BseYI	CCCAGC	1 cut(s)	834
Bsh1236I	CGCG	2 cut(s)	269, 1180
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	227, 1522
BshVI	ATCGAT	1 cut(s)	1095
BsiEI	CGRYCG	1 cut(s)	204
BsiHKAI	GWGCWC	2 cut(s)	1173, 1974
BsiHKCI	CYCGRG	1 cut(s)	59
BslFI	GGGAC	4 cut(s)	218, 278, 978, 1738
BslI	CCNNNNNNNGG	3 cut(s)	841, 1002, 1703
BsmAI	GTCTC	3 cut(s)	46, 166, 1628
BsmBI	CGTCTC	1 cut(s)	166
BsmFI	GGGAC	4 cut(s)	218, 278, 978, 1738
BsnI	GGCC	2 cut(s)	227, 1522
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	59
Bsp119I	TTCGAA	2 cut(s)	1115, 2048
Bsp1286I	GDGCHC	2 cut(s)	1173, 1974
Bsp1720I	GCTNAGC	2 cut(s)	1066, 1188
Bsp19I	CCATGG	2 cut(s)	1001, 1494
BspACI	CCGC	4 cut(s)	133, 666, 996, 1180
BspANI	GGCC	2 cut(s)	227, 1522
BspCNI	CTCAG	6 cut(s)	252, 361, 1561, 1642, 1973, 2130
BspDI	ATCGAT	1 cut(s)	1095
BspFNI	CGCG	2 cut(s)	269, 1180
BspHI	TCATGA	1 cut(s)	1792
BspLI	GGNNCC	4 cut(s)	6, 381, 994, 2028
BspOI	GCTAGC	1 cut(s)	924
BspPI	GGATC	8 cut(s)	12, 353, 641, 1100, 1563, 1834, 1997, 2344
BspQI	GCTCTTC	2 cut(s)	543, 1930
BspT104I	TTCGAA	2 cut(s)	1115, 2048
BspTNI	GGTCTC	1 cut(s)	46
BsrBI	CCGCTC	1 cut(s)	135
BsrDI	GCAATG	4 cut(s)	102, 580, 1339, 1448
BsrI	ACTGG	5 cut(s)	300, 1472, 1697, 1990, 2077
BssNI	GRCGYC	1 cut(s)	114
BssT1I	CCWWGG	8 cut(s)	487, 679, 1001, 1494, 1574, 1634, 1846, 2111
Bst2UI	CCWGG	2 cut(s)	363, 1132
Bst4CI	ACNGT	7 cut(s)	160, 673, 796, 945, 1015, 1434, 1622
Bst6I	CTCTTC	4 cut(s)	543, 1232, 1531, 1930
BstACI	GRCGYC	1 cut(s)	114
BstAPI	GCANNNNNTGC	2 cut(s)	1329, 1452
BstBI	TTCGAA	2 cut(s)	1115, 2048
BstC8I	GCNNGC	5 cut(s)	181, 587, 922, 1105, 1785
BstDSI	CCRYGG	2 cut(s)	1001, 1494
BstF5I	GGATG	7 cut(s)	580, 661, 738, 850, 1030, 1189, 1943
BstFNI	CGCG	2 cut(s)	269, 1180
BstMAI	GTCTC	3 cut(s)	46, 166, 1628
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 189, 424, 575, 1177, 1329, 1379, 1452
BstNI	CCWGG	2 cut(s)	363, 1132
BstSCI	CCNGG	2 cut(s)	361, 1130
BstSFI	CTRYAG	4 cut(s)	795, 1014, 1430, 2037
BstUI	CGCG	2 cut(s)	269, 1180
BstV1I	GCAGC	3 cut(s)	578, 1087, 1369
BstV2I	GAAGAC	6 cut(s)	202, 446, 598, 1235, 1549, 2150
BstX2I	RGATCY	5 cut(s)	4, 633, 1730, 1839, 1855
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	5 cut(s)	4, 633, 1730, 1839, 1855
Bsu15I	ATCGAT	1 cut(s)	1095
BsuRI	GGCC	2 cut(s)	227, 1522
BsuTUI	ATCGAT	1 cut(s)	1095
BtgI	CCRYGG	2 cut(s)	1001, 1494
BtsCI	GGATG	7 cut(s)	580, 661, 738, 850, 1030, 1189, 1943
BtsIMutI	CAGTG	4 cut(s)	669, 957, 1704, 2265
Cac8I	GCNNGC	5 cut(s)	181, 587, 922, 1105, 1785
CaiI	CAGNNNCTG	1 cut(s)	415
CciI	TCATGA	1 cut(s)	1792
Cfr13I	GGNCC	2 cut(s)	760, 992
ClaI	ATCGAT	1 cut(s)	1095
CseI	GACGC	3 cut(s)	122, 275, 1186
Csp6I	GTAC	5 cut(s)	1639, 1938, 1983, 2178, 2244
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviQI	GTAC	5 cut(s)	1639, 1938, 1983, 2178, 2244
DrdI	GACNNNNNNGTC	2 cut(s)	200, 203
DseDI	GACNNNNNNGTC	2 cut(s)	200, 203
Eam1104I	CTCTTC	4 cut(s)	543, 1232, 1531, 1930
EarI	CTCTTC	4 cut(s)	543, 1232, 1531, 1930
Ecl136II	GAGCTC	1 cut(s)	1972
Eco130I	CCWWGG	8 cut(s)	487, 679, 1001, 1494, 1574, 1634, 1846, 2111
Eco147I	AGGCCT	1 cut(s)	1522
Eco24I	GRGCYC	1 cut(s)	1974
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	2 cut(s)	760, 992
Eco53kI	GAGCTC	1 cut(s)	1972
Eco57I	CTGAAG	2 cut(s)	1386, 1692
Eco88I	CYCGRG	1 cut(s)	59
EcoICRI	GAGCTC	1 cut(s)	1972
EcoO109I	RGGNCCY	1 cut(s)	992
EcoRII	CCWGG	2 cut(s)	361, 1130
EcoT14I	CCWWGG	8 cut(s)	487, 679, 1001, 1494, 1574, 1634, 1846, 2111
EcoT22I	ATGCAT	2 cut(s)	1448, 1999
EcoT38I	GRGCYC	1 cut(s)	1974
ErhI	CCWWGG	8 cut(s)	487, 679, 1001, 1494, 1574, 1634, 1846, 2111
Esp3I	CGTCTC	1 cut(s)	166
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	4 cut(s)	218, 278, 978, 1738
FauI	CCCGC	3 cut(s)	673, 1003, 1173
FauNDI	CATATG	1 cut(s)	562
FbaI	TGATCA	3 cut(s)	1885, 1897, 2215
Fnu4HI	GCNGC	3 cut(s)	567, 1101, 1383
FokI	GGATG	7 cut(s)	587, 648, 745, 857, 1017, 1196, 1930
FriOI	GRGCYC	1 cut(s)	1974
Fsp4HI	GCNGC	3 cut(s)	567, 1101, 1383
FspBI	CTAG	5 cut(s)	921, 1865, 1920, 1929, 2181
GluI	GCNGC	3 cut(s)	567, 1101, 1383
GsaI	CCCAGC	1 cut(s)	838
HaeIII	GGCC	2 cut(s)	227, 1522
HgaI	GACGC	3 cut(s)	122, 275, 1186
Hin1I	GRCGYC	1 cut(s)	114
HindIII	AAGCTT	3 cut(s)	704, 1560, 1781
HphI	GGTGA	5 cut(s)	62, 635, 1034, 1246, 1813
Hpy166II	GTNNAC	6 cut(s)	66, 277, 325, 336, 643, 676
Hpy188I	TCNGA	9 cut(s)	291, 611, 655, 764, 904, 1035, 1513, 1551, 1885
Hpy8I	GTNNAC	6 cut(s)	66, 277, 325, 336, 643, 676
Hpy99I	CGWCG	3 cut(s)	116, 197, 209
HpyAV	CCTTC	9 cut(s)	252, 623, 660, 853, 1055, 1546, 1653, 1667, 2285
HpyCH4III	ACNGT	7 cut(s)	160, 673, 796, 945, 1015, 1434, 1622
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 189, 424, 575, 1177, 1329, 1379, 1452
Hsp92I	GRCGYC	1 cut(s)	114
Ksp22I	TGATCA	3 cut(s)	1885, 1897, 2215
LguI	GCTCTTC	2 cut(s)	543, 1930
LmnI	GCTCC	6 cut(s)	98, 140, 379, 1969, 1977, 2032
Lsp1109I	GCAGC	3 cut(s)	578, 1087, 1369
LweI	GCATC	9 cut(s)	421, 565, 1073, 1087, 1174, 1310, 1319, 1917, 2006
MaeI	CTAG	5 cut(s)	921, 1865, 1920, 1929, 2181
MaeIII	GTNAC	1 cut(s)	1604
MbiI	CCGCTC	1 cut(s)	135
MflI	RGATCY	5 cut(s)	4, 633, 1730, 1839, 1855
MhlI	GDGCHC	2 cut(s)	1173, 1974
MluI	ACGCGT	1 cut(s)	267
MlyI	GAGTC	3 cut(s)	82, 191, 1249
MmeI	TCCRAC	2 cut(s)	196, 1309
Mph1103I	ATGCAT	2 cut(s)	1448, 1999
MroXI	GAANNNNTTC	1 cut(s)	2018
MseI	TTAA	8 cut(s)	309, 624, 1079, 1139, 1488, 1914, 2009, 2106
MslI	CAYNNNNRTG	2 cut(s)	2190, 2304
MspA1I	CMGCKG	1 cut(s)	1309
MspR9I	CCNGG	2 cut(s)	363, 1132
MvaI	CCWGG	2 cut(s)	363, 1132
MvnI	CGCG	2 cut(s)	269, 1180
MwoI	GCNNNNNNNGC	8 cut(s)	113, 189, 424, 575, 1177, 1329, 1379, 1452
NcoI	CCATGG	2 cut(s)	1001, 1494
NdeI	CATATG	1 cut(s)	562
NheI	GCTAGC	1 cut(s)	920
NlaIV	GGNNCC	4 cut(s)	6, 381, 994, 2028
NmeAIII	GCCGAG	2 cut(s)	142, 168
NsiI	ATGCAT	2 cut(s)	1448, 1999
NspV	TTCGAA	2 cut(s)	1115, 2048
PagI	TCATGA	1 cut(s)	1792
PceI	AGGCCT	1 cut(s)	1522
PciSI	GCTCTTC	2 cut(s)	543, 1930
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PdmI	GAANNNNTTC	1 cut(s)	2018
PfeI	GAWTC	9 cut(s)	53, 899, 1127, 1401, 1426, 1514, 1823, 2045, 2233
PflFI	GACNNNGTC	1 cut(s)	200
PflMI	CCANNNNNTGG	2 cut(s)	841, 1703
PkrI	GCNGC	3 cut(s)	568, 1102, 1384
PleI	GAGTC	3 cut(s)	82, 191, 1248
PpsI	GAGTC	3 cut(s)	82, 191, 1248
PpuMI	RGGWCCY	1 cut(s)	992
PshBI	ATTAAT	2 cut(s)	1139, 2009
Psp124BI	GAGCTC	1 cut(s)	1974
Psp5II	RGGWCCY	1 cut(s)	992
Psp6I	CCWGG	2 cut(s)	361, 1130
PspFI	CCCAGC	1 cut(s)	834
PspGI	CCWGG	2 cut(s)	361, 1130
PspN4I	GGNNCC	4 cut(s)	6, 381, 994, 2028
PspPI	GGNCC	2 cut(s)	760, 992
PspPPI	RGGWCCY	1 cut(s)	992
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	5 cut(s)	4, 633, 1730, 1839, 1855
PsyI	GACNNNGTC	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	1309
RsaI	GTAC	5 cut(s)	1640, 1939, 1984, 2179, 2245
RsaNI	GTAC	5 cut(s)	1639, 1938, 1983, 2178, 2244
RseI	CAYNNNNRTG	2 cut(s)	2190, 2304
SacI	GAGCTC	1 cut(s)	1974
SapI	GCTCTTC	2 cut(s)	543, 1930
SaqAI	TTAA	8 cut(s)	309, 624, 1079, 1139, 1488, 1914, 2009, 2106
SatI	GCNGC	3 cut(s)	567, 1101, 1383
Sau96I	GGNCC	2 cut(s)	760, 992
ScaI	AGTACT	3 cut(s)	1939, 1984, 2245
SchI	GAGTC	3 cut(s)	82, 191, 1249
ScrFI	CCNGG	2 cut(s)	363, 1132
SduI	GDGCHC	2 cut(s)	1173, 1974
SfaNI	GCATC	9 cut(s)	421, 565, 1073, 1087, 1174, 1310, 1319, 1917, 2006
SfcI	CTRYAG	4 cut(s)	795, 1014, 1430, 2037
SfuI	TTCGAA	2 cut(s)	1115, 2048
SinI	GGWCC	2 cut(s)	760, 992
SmiMI	CAYNNNNRTG	2 cut(s)	2190, 2304
SmlI	CTYRAG	5 cut(s)	698, 1247, 1265, 1711, 1976
SmoI	CTYRAG	5 cut(s)	698, 1247, 1265, 1711, 1976
SpeI	ACTAGT	1 cut(s)	2180
SseBI	AGGCCT	1 cut(s)	1522
SsiI	CCGC	4 cut(s)	133, 666, 996, 1180
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	5 cut(s)	921, 1865, 1920, 1929, 2181
SstI	GAGCTC	1 cut(s)	1974
StuI	AGGCCT	1 cut(s)	1522
StyD4I	CCNGG	2 cut(s)	361, 1130
StyI	CCWWGG	8 cut(s)	487, 679, 1001, 1494, 1574, 1634, 1846, 2111
TaaI	ACNGT	7 cut(s)	160, 673, 796, 945, 1015, 1434, 1622
TaqI	TCGA	5 cut(s)	111, 219, 1095, 1115, 2048
TaqII	GACCGA	1 cut(s)	190
TatI	WGTACW	3 cut(s)	1937, 1982, 2243
TfiI	GAWTC	9 cut(s)	53, 899, 1127, 1401, 1426, 1514, 1823, 2045, 2233
Tru1I	TTAA	8 cut(s)	309, 624, 1079, 1139, 1488, 1914, 2009, 2106
Tru9I	TTAA	8 cut(s)	309, 624, 1079, 1139, 1488, 1914, 2009, 2106
TscAI	CASTG	4 cut(s)	676, 957, 1704, 2272
TseI	GCWGC	3 cut(s)	566, 1100, 1382
TspDTI	ATGAA	8 cut(s)	749, 861, 1269, 1731, 1761, 1932, 2011, 2027
TspGWI	ACGGA	1 cut(s)	220
TspRI	CASTG	4 cut(s)	676, 957, 1704, 2272
Tth111I	GACNNNGTC	1 cut(s)	200
Van91I	CCANNNNNTGG	2 cut(s)	841, 1703
VpaK11BI	GGWCC	2 cut(s)	760, 992
VspI	ATTAAT	2 cut(s)	1139, 2009
XapI	RAATTY	6 cut(s)	737, 848, 1598, 2092, 2102, 2270
XbaI	TCTAGA	1 cut(s)	1928
XmnI	GAANNNNTTC	1 cut(s)	2018
XspI	CTAG	5 cut(s)	921, 1865, 1920, 1929, 2181
ZrmI	AGTACT	3 cut(s)	1939, 1984, 2245
Zsp2I	ATGCAT	2 cut(s)	1448, 1999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.