MD00G1013600.v1.1

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
1706153 .. 1709792
3640 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1013600.v1.1.491

Sequence Viewer

Length: 783 bp
ATGGGCGTGGTGAGTGTTTCTACTTCCATTGCTTCTCTAATCATCTCACTAATGTGGGTGGCTGAAGCAAGAATCCCAGGAGTCTACACTGGTGGTGCATGGCAAGGCGCTCATGCCACCTTCTACGGTGGCTCCGACGCCTCCGGAACCATGGGTGGGGCTTGTGGATACGGAAATCTATACAGCCAAGGGTACGGAGTTAACACGGCGGCACTGAGCACAGCGCTGTTCAACAATGGCCTCAGCTGCGGAGCCTGCTTTGAGCTCAAGTGTGCAGAGGACCCCAGCTGGTGCCACGCCGGAAGTCCATCTATTTTCATCACTGCCACTAACTTTTGCCCTCCCAATTTTGCCCAACCAAGCGACAATGGCGGATGGTGCAACCCTCCTAGGCCCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATTGCCGAGTACAGAGCTGGGATCGTCCCTGTTTCCTACCGTAGGGTGCCATGTCGGAAGCGCGGAGGGATCAGGTTCACAATCAACGGCTTCCGCTACTTCAACCTGGTTCTGATCAGCAACGTGGCGGGCGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCGCCAGGACCGGCTGGATGAGCATGAGCCGCAACTGGGGTCAGAACTGGCAGTCGAACTCCGTTCTGGTTGGTCAGTCACTTTCCTTCAGGGTCACCGGCAGTGACCGACGCACTTCCACCTCGTGGAACATCGTCCCGGCACACTGGCAGTTCGGTCAAACATTCACCGGAAAGAACTTCAGAGTCTGA

Protein Analysis

261

Amino Acids

28.0

Weight (kDa)

9.55

Isoelectric Point (pI)

31.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 39 - 162 1.7e-08 EXPB1-like domain 1
DPBB_1 PF03330 69 - 156 6.5e-21 Lytic transglycolase
Expansin_C PF01357 167 - 244 2.1e-29 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 291, 475, 593
AccB7I CCANNNNNTGG 1 cut(s) 717
AccI GTMKAC 1 cut(s) 84
AccII CGCG 1 cut(s) 492
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 7 cut(s) 209, 249, 372, 492, 523, 557, 622
AclWI GGATC 2 cut(s) 458, 506
AcuI CTGAAG 3 cut(s) 84, 664, 757
AcyI GRCGYC 2 cut(s) 138, 594
AdeI CACNNNGTG 1 cut(s) 717
AfaI GTAC 2 cut(s) 194, 440
AfeI AGCGCT 1 cut(s) 225
AfiI CCNNNNNNNGG 4 cut(s) 156, 471, 628, 717
AgsI TTSAA 2 cut(s) 232, 532
AjnI CCWGG 3 cut(s) 76, 534, 596
AleI CACNNNNGTG 1 cut(s) 52
AluBI AGCT 4 cut(s) 246, 265, 288, 446
AluI AGCT 4 cut(s) 246, 265, 288, 446
Alw21I GWGCWC 2 cut(s) 221, 267
AlwI GGATC 2 cut(s) 458, 506
AlwNI CAGNNNCTG 1 cut(s) 780
Aor13HI TCCGGA 1 cut(s) 143
Aor51HI AGCGCT 1 cut(s) 225
AoxI GGCC 2 cut(s) 238, 392
ApeKI GCWGC 1 cut(s) 246
AspA2I CCTAGG 1 cut(s) 389
AspLEI GCGC 5 cut(s) 110, 226, 492, 563, 596
AspS9I GGNCC 3 cut(s) 280, 393, 600
AsuC2I CCSGG 1 cut(s) 731
AsuHPI GGTGA 4 cut(s) 22, 592, 679, 751
AvaII GGWCC 2 cut(s) 280, 600
AvrII CCTAGG 1 cut(s) 389
BanI GGYRCC 3 cut(s) 291, 475, 593
BanII GRGCYC 1 cut(s) 267
BauI CACGAG 1 cut(s) 715
Bbv12I GWGCWC 2 cut(s) 221, 267
BbvCI CCTCAGC 1 cut(s) 242
BbvI GCAGC 1 cut(s) 233
BccI CCATC 2 cut(s) 316, 369
BceAI ACGGC 2 cut(s) 222, 532
BciT130I CCWGG 3 cut(s) 78, 536, 598
BciVI GTATCC 1 cut(s) 161
BclI TGATCA 1 cut(s) 543
BcnI CCSGG 1 cut(s) 731
BfaI CTAG 1 cut(s) 390
BfoI RGCGCY 3 cut(s) 111, 227, 597
BfuI GTATCC 1 cut(s) 161
BisI GCNGC 3 cut(s) 210, 247, 622
BlnI CCTAGG 1 cut(s) 389
BlsI GCNGC 3 cut(s) 211, 248, 623
Bme1390I CCNGG 4 cut(s) 78, 536, 598, 731
Bme18I GGWCC 2 cut(s) 280, 600
BmgT120I GGNCC 3 cut(s) 280, 393, 600
BmiI GGNNCC 8 cut(s) 133, 148, 253, 282, 293, 395, 477, 595
BmrFI CCNGG 4 cut(s) 78, 536, 598, 731
BmrI ACTGGG 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 637
Bpu10I CCTNAGC 1 cut(s) 242
BpuEI CTTGAG 2 cut(s) 251, 410
BpuMI CCSGG 1 cut(s) 731
BsaHI GRCGYC 2 cut(s) 138, 594
BsaJI CCNNGG 4 cut(s) 76, 150, 187, 389
BsaWI WCCGGW 2 cut(s) 143, 761
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 471, 628, 717
Bse118I RCCGGY 2 cut(s) 602, 689
Bse1I ACTGG 4 cut(s) 94, 632, 644, 743
Bse3DI GCAATG 1 cut(s) 27
BseAI TCCGGA 1 cut(s) 143
BseBI CCWGG 3 cut(s) 78, 536, 598
BseDI CCNNGG 4 cut(s) 76, 150, 187, 389
BseGI GGATG 2 cut(s) 380, 615
BseLI CCNNNNNNNGG 4 cut(s) 156, 471, 628, 717
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 206, 256
BseNI ACTGG 4 cut(s) 94, 632, 644, 743
BseXI GCAGC 1 cut(s) 233
BseYI CCCAGC 2 cut(s) 284, 446
BsgI GTGCAG 1 cut(s) 294
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 2 cut(s) 240, 394
BshNI GGYRCC 3 cut(s) 291, 475, 593
BsiHKAI GWGCWC 2 cut(s) 221, 267
BsiSI CCGG 6 cut(s) 144, 300, 603, 690, 731, 762
BslFI GGGAC 2 cut(s) 440, 713
BslI CCNNNNNNNGG 4 cut(s) 156, 471, 628, 717
BsmFI GGGAC 2 cut(s) 440, 713
BsnI GGCC 2 cut(s) 240, 394
Bsp1286I GDGCHC 2 cut(s) 221, 267
Bsp13I TCCGGA 1 cut(s) 143
Bsp143I GATC 3 cut(s) 450, 498, 543
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 7 cut(s) 209, 249, 372, 492, 523, 557, 622
BspANI GGCC 2 cut(s) 240, 394
BspCNI CTCAG 2 cut(s) 207, 255
BspEI TCCGGA 1 cut(s) 143
BspFNI CGCG 1 cut(s) 492
BspLI GGNNCC 8 cut(s) 133, 148, 253, 282, 293, 395, 477, 595
BspPI GGATC 2 cut(s) 458, 506
BspT107I GGYRCC 3 cut(s) 291, 475, 593
BsrDI GCAATG 1 cut(s) 27
BsrFI RCCGGY 2 cut(s) 602, 689
BsrI ACTGG 4 cut(s) 94, 632, 644, 743
BssAI RCCGGY 2 cut(s) 602, 689
BssECI CCNNGG 4 cut(s) 76, 150, 187, 389
BssMI GATC 3 cut(s) 450, 498, 543
BssNI GRCGYC 2 cut(s) 138, 594
BssSI CACGAG 1 cut(s) 715
BssT1I CCWWGG 3 cut(s) 150, 187, 389
Bst2BI CACGAG 1 cut(s) 715
Bst2UI CCWGG 3 cut(s) 78, 536, 598
Bst4CI ACNGT 2 cut(s) 128, 470
BstACI GRCGYC 2 cut(s) 138, 594
BstC8I GCNNGC 2 cut(s) 256, 559
BstDEI CTNAG 2 cut(s) 215, 242
BstDSI CCRYGG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 685
BstENI CCTNNNNNAGG 1 cut(s) 469
BstF5I GGATG 2 cut(s) 380, 615
BstFNI CGCG 1 cut(s) 492
BstH2I RGCGCY 3 cut(s) 111, 227, 597
BstHHI GCGC 5 cut(s) 110, 226, 492, 563, 596
BstKTI GATC 3 cut(s) 453, 501, 546
BstMBI GATC 3 cut(s) 450, 498, 543
BstMWI GCNNNNNNNGC 7 cut(s) 246, 255, 369, 378, 591, 612, 621
BstNI CCWGG 3 cut(s) 78, 536, 598
BstPI GGTNACC 1 cut(s) 685
BstSCI CCNGG 4 cut(s) 76, 534, 596, 729
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 1 cut(s) 233
BsuI GTATCC 1 cut(s) 161
BsuRI GGCC 2 cut(s) 240, 394
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 380, 615
BtsI GCAGTG 2 cut(s) 321, 700
BtsIMutI CAGTG 5 cut(s) 87, 212, 321, 700, 736
Cac8I GCNNGC 2 cut(s) 256, 559
CaiI CAGNNNCTG 1 cut(s) 780
CfoI GCGC 5 cut(s) 110, 226, 492, 563, 596
Cfr10I RCCGGY 2 cut(s) 602, 689
Cfr13I GGNCC 3 cut(s) 280, 393, 600
CseI GACGC 2 cut(s) 146, 711
CsiI ACCWGGT 1 cut(s) 534
Csp6I GTAC 2 cut(s) 193, 439
CviAII CATG 7 cut(s) 99, 113, 151, 412, 418, 480, 616
CviQI GTAC 2 cut(s) 193, 439
DdeI CTNAG 2 cut(s) 215, 242
DinI GGCGCC 1 cut(s) 595
DpnI GATC 3 cut(s) 452, 500, 545
DpnII GATC 3 cut(s) 450, 498, 543
DraIII CACNNNGTG 1 cut(s) 717
EciI GGCGGA 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 265
Eco130I CCWWGG 3 cut(s) 150, 187, 389
Eco24I GRGCYC 1 cut(s) 267
Eco32I GATATC 1 cut(s) 571
Eco47I GGWCC 2 cut(s) 280, 600
Eco47III AGCGCT 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 3 cut(s) 84, 664, 757
Eco91I GGTNACC 1 cut(s) 685
EcoICRI GAGCTC 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 469
EcoO109I RGGNCCY 2 cut(s) 280, 393
EcoO65I GGTNACC 1 cut(s) 685
EcoRII CCWGG 3 cut(s) 76, 534, 596
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 3 cut(s) 150, 187, 389
EcoT38I GRGCYC 1 cut(s) 267
EgeI GGCGCC 1 cut(s) 595
EheI GGCGCC 1 cut(s) 595
ErhI CCWWGG 3 cut(s) 150, 187, 389
FaeI CATG 7 cut(s) 102, 116, 154, 415, 421, 483, 619
FaiI YATR 8 cut(s) 100, 114, 152, 181, 413, 419, 481, 617
FaqI GGGAC 2 cut(s) 440, 713
FatI CATG 7 cut(s) 98, 112, 150, 411, 417, 479, 615
FauI CCCGC 1 cut(s) 550
FbaI TGATCA 1 cut(s) 543
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 210, 247, 622
FokI GGATG 2 cut(s) 387, 622
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 3 cut(s) 210, 247, 622
FspBI CTAG 1 cut(s) 390
GlaI GCGC 5 cut(s) 109, 225, 491, 562, 595
GluI GCNGC 3 cut(s) 210, 247, 622
GsaI CCCAGC 2 cut(s) 288, 450
HaeII RGCGCY 3 cut(s) 111, 227, 597
HaeIII GGCC 2 cut(s) 240, 394
HapII CCGG 6 cut(s) 144, 300, 603, 690, 731, 762
HgaI GACGC 2 cut(s) 146, 711
HhaI GCGC 5 cut(s) 110, 226, 492, 563, 596
Hin1I GRCGYC 2 cut(s) 138, 594
Hin1II CATG 7 cut(s) 102, 116, 154, 415, 421, 483, 619
Hin6I GCGC 5 cut(s) 108, 224, 490, 561, 594
HinP1I GCGC 5 cut(s) 108, 224, 490, 561, 594
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 3 cut(s) 72, 81, 777
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 6 cut(s) 144, 300, 603, 690, 731, 762
HphI GGTGA 4 cut(s) 22, 592, 679, 751
Hpy166II GTNNAC 3 cut(s) 85, 202, 507
Hpy188I TCNGA 6 cut(s) 136, 486, 543, 636, 776, 782
Hpy188III TCNNGA 3 cut(s) 144, 427, 574
Hpy8I GTNNAC 3 cut(s) 85, 202, 507
Hpy99I CGWCG 2 cut(s) 140, 705
HpyAV CCTTC 3 cut(s) 130, 571, 688
HpyCH4III ACNGT 2 cut(s) 128, 470
HpyCH4IV ACGT 1 cut(s) 552
HpyCH4V TGCA 3 cut(s) 98, 275, 381
HpyF10VI GCNNNNNNNGC 7 cut(s) 246, 255, 369, 378, 591, 612, 621
HpyF3I CTNAG 2 cut(s) 215, 242
HpySE526I ACGT 1 cut(s) 552
Hsp92I GRCGYC 2 cut(s) 138, 594
Hsp92II CATG 7 cut(s) 102, 116, 154, 415, 421, 483, 619
HspAI GCGC 5 cut(s) 108, 224, 490, 561, 594
KasI GGCGCC 1 cut(s) 593
Kpn2I TCCGGA 1 cut(s) 143
Ksp22I TGATCA 1 cut(s) 543
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 3 cut(s) 450, 498, 543
LmnI GCTCC 2 cut(s) 137, 251
Lsp1109I GCAGC 1 cut(s) 233
MabI ACCWGGT 1 cut(s) 534
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 552
MaeIII GTNAC 3 cut(s) 669, 685, 695
MalI GATC 3 cut(s) 452, 500, 545
MboI GATC 3 cut(s) 450, 498, 543
MhlI GDGCHC 2 cut(s) 221, 267
MluCI AATT 1 cut(s) 346
Mly113I GGCGCC 1 cut(s) 594
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 2 cut(s) 159, 464
MnlI CCTC 9 cut(s) 151, 251, 271, 351, 396, 416, 434, 488, 724
MroI TCCGGA 1 cut(s) 143
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 2 cut(s) 52, 416
MspA1I CMGCKG 2 cut(s) 246, 288
MspI CCGG 6 cut(s) 144, 300, 603, 690, 731, 762
MspR9I CCNGG 4 cut(s) 78, 536, 598, 731
MvaI CCWGG 3 cut(s) 78, 536, 598
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 7 cut(s) 246, 255, 369, 378, 591, 612, 621
NarI GGCGCC 1 cut(s) 594
NciI CCSGG 1 cut(s) 731
NcoI CCATGG 1 cut(s) 150
NdeII GATC 3 cut(s) 450, 498, 543
NlaIII CATG 7 cut(s) 102, 116, 154, 415, 421, 483, 619
NlaIV GGNNCC 8 cut(s) 133, 148, 253, 282, 293, 395, 477, 595
NmeAIII GCCGAG 1 cut(s) 460
NmuCI GTSAC 3 cut(s) 669, 685, 695
OliI CACNNNNGTG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 717
PkrI GCNGC 3 cut(s) 211, 248, 623
PleI GAGTC 1 cut(s) 89
PluTI GGCGCC 1 cut(s) 597
PpsI GAGTC 1 cut(s) 89
PpuMI RGGWCCY 1 cut(s) 280
Psp124BI GAGCTC 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 280
Psp6I CCWGG 3 cut(s) 76, 534, 596
PspEI GGTNACC 1 cut(s) 685
PspFI CCCAGC 2 cut(s) 284, 446
PspGI CCWGG 3 cut(s) 76, 534, 596
PspN4I GGNNCC 8 cut(s) 133, 148, 253, 282, 293, 395, 477, 595
PspPI GGNCC 3 cut(s) 280, 393, 600
PspPPI RGGWCCY 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 780
PvuII CAGCTG 2 cut(s) 246, 288
RsaI GTAC 2 cut(s) 194, 440
RsaNI GTAC 2 cut(s) 193, 439
RseI CAYNNNNRTG 2 cut(s) 52, 416
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 3 cut(s) 210, 247, 622
Sau3AI GATC 3 cut(s) 450, 498, 543
Sau96I GGNCC 3 cut(s) 280, 393, 600
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 4 cut(s) 78, 536, 598, 731
SduI GDGCHC 2 cut(s) 221, 267
SexAI ACCWGGT 1 cut(s) 534
SfoI GGCGCC 1 cut(s) 595
SinI GGWCC 2 cut(s) 280, 600
SmiMI CAYNNNNRTG 2 cut(s) 52, 416
SmlI CTYRAG 2 cut(s) 266, 425
SmoI CTYRAG 2 cut(s) 266, 425
Sse9I AATT 1 cut(s) 346
SsiI CCGC 7 cut(s) 209, 249, 372, 492, 523, 557, 622
SspDI GGCGCC 1 cut(s) 593
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 267
StyD4I CCNGG 4 cut(s) 76, 534, 596, 729
StyI CCWWGG 3 cut(s) 150, 187, 389
TaaI ACNGT 2 cut(s) 128, 470
TaiI ACGT 1 cut(s) 555
TaqI TCGA 2 cut(s) 402, 647
TaqII GACCGA 2 cut(s) 714, 737
TasI AATT 1 cut(s) 346
TatI WGTACW 1 cut(s) 438
TauI GCSGC 2 cut(s) 212, 624
TfiI GAWTC 1 cut(s) 72
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 5 cut(s) 94, 219, 328, 700, 743
TseFI GTSAC 3 cut(s) 669, 685, 695
TseI GCWGC 1 cut(s) 246
Tsp45I GTSAC 3 cut(s) 669, 685, 695
TspDTI ATGAA 1 cut(s) 307
TspGWI ACGGA 3 cut(s) 186, 210, 643
TspRI CASTG 5 cut(s) 94, 219, 328, 700, 743
Van91I CCANNNNNTGG 1 cut(s) 717
VpaK11BI GGWCC 2 cut(s) 280, 600
XagI CCTNNNNNAGG 1 cut(s) 469
XmaJI CCTAGG 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.