Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008994

Physical Location & Seq

Genomic Coordinates Forward (+)

49956322 .. 49957996

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0371100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTAATTCTGAAGCCTCTCCTCTTGTTCCTGCTCCTCCTCGTTTTTCTTTTTCTTCTTTCACGCATCCATGGAAATACCATGTCTTTCTGAGTTTTCGAGGGGAGGATACACGTAACAATTTCACAGCCCATTTGTGCAGCGCGTTGCGTCTGAGGGGAATCAACACCTTCATGGATGATGAGCTCTCAAGAGGGGAAGATATATCAGGAGAGCTTCTCCAAGCAATTGAAAAGTCAAAAATTTCAATCATCGTGTTCTCTGAAACCTATGCATCCTCCAAGTGGTGTCTGGATGAACTCGTCAAGATTCTTGAGTGTAAAGAATCAAAAAAACGACTGGTTCGACCGGTCTTTTACAGAGTGGATCCCTCGCATGTACGAAACGTTCAAGGCACTTTTGGTGAGGCACTTGCTAATCATGAACGCAATTCATCCGTGAGCTCAGAGAAAGCTGGTCATTGTACTCTCAAACAACATCACCTGAGTCCAAATTTTGAATCCGGGTCCAACAAACACCGCTTCACCGACGGCCGTTCCATTACCTTCAACGCCCAATTCGCCGACAACCACCAATCCATTGTCTTCATCTCTCGAATCACCAATCCATTAACTTCAATGCCCACTTTGGCCTCACCCCTCACCGCCACCCTCACTACCGCCGATCTTCGCGCCGCCACCGAAATCAAACATATATTCAAAGAAGGAAGGAAGGGCGAGTTGCCATGTTTTACGGTGATGTTTGGATTCGAACCAGGTATCAAACTTCGTCTAATTATCGACGTCTACATGTCTGTTACTTCGGATTTCACTTCAAGTTTGGTTGAATTTGGAGAGTTGGAGTTTTGGGTTTTGTGGCTACTGCATATTCATGGATCCGGTTTGGTACCAGCTCTGGGAACCATTGTGGGTCTTGTGACCGAGGCCATGGTTGGGCAAGAAGGGGAAGAGGTCGCCGAACAAGGGGTAGCCGGAGTAGTTGGAGAGGAGATCGAGGTTGAAAGTGGAGGGGAGCCGCCGTATGTGGATCCAACGGTTGGCGCAGTTCGTTGGGTTAGAGTCGAATTGATCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

358

Amino Acids

39.71

Weight (kDa)

5.66

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	26 - 146	4.4e-44	TIR domain
TIR_2	PF13676	29 - 124	2.5e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28950
fragaria_vesca	FvH4_3g36410
malus_domestica	MD00G1013600.v1.1 MD03G1090700.v1.1 MD11G1105700.v1.1
prunus_persica	Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1
pyrus_communis	pycom03g07260 pycom11g08720
rosa_chinensis	RchiOBHm_Chr5g0065301
rosa_laevigata	RLG00000035779
rosa_multiflora	Rmu_co8233643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015890 Rroxscaffold_6G00414450
rosa_rugosa	Rorug05G0371100
rosa_samantha	Rh3AG128600 Rh5AG428900 Rh5BG444200 Rh5CG466400 Rh5DG456400
rosa_wichuraiana	Rw5G040260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	786
Acc65I	GGTACC	1 cut(s)	886
AccB1I	GGYRCC	1 cut(s)	886
AccB7I	CCANNNNNTGG	1 cut(s)	1037
AccI	GTMKAC	1 cut(s)	786
AccII	CGCG	2 cut(s)	146, 672
AciI	CCGC	5 cut(s)	520, 645, 660, 675, 1016
AclI	AACGTT	1 cut(s)	387
AclWI	GGATC	6 cut(s)	362, 375, 870, 883, 1022, 1035
AcoI	YGGCCR	1 cut(s)	532
AcsI	RAATTY	3 cut(s)	243, 493, 827
AcuI	CTGAAG	1 cut(s)	33
AcyI	GRCGYC	1 cut(s)	783
AfaI	GTAC	3 cut(s)	381, 466, 888
AfiI	CCNNNNNNNGG	5 cut(s)	285, 896, 933, 963, 1037
AflIII	ACRYGT	2 cut(s)	113, 789
AgeI	ACCGGT	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	754
AluBI	AGCT	5 cut(s)	187, 217, 444, 455, 893
AluI	AGCT	5 cut(s)	187, 217, 444, 455, 893
Alw21I	GWGCWC	2 cut(s)	189, 446
AlwI	GGATC	6 cut(s)	362, 375, 870, 883, 1022, 1035
AoxI	GGCC	3 cut(s)	532, 630, 924
ApeKI	GCWGC	1 cut(s)	141
ApoI	RAATTY	3 cut(s)	243, 493, 827
AsiGI	ACCGGT	1 cut(s)	349
Asp718I	GGTACC	1 cut(s)	886
AspLEI	GCGC	3 cut(s)	146, 674, 1043
AspS9I	GGNCC	1 cut(s)	507
AsuC2I	CCSGG	1 cut(s)	505
AsuHPI	GGTGA	7 cut(s)	416, 473, 517, 592, 627, 634, 748
AsuII	TTCGAA	1 cut(s)	750
AvaII	GGWCC	1 cut(s)	507
BamHI	GGATCC	3 cut(s)	367, 875, 1027
BanI	GGYRCC	1 cut(s)	886
BanII	GRGCYC	2 cut(s)	189, 446
BbsI	GAAGAC	1 cut(s)	577
Bbv12I	GWGCWC	2 cut(s)	189, 446
BbvI	GCAGC	1 cut(s)	153
BceAI	ACGGC	3 cut(s)	519, 547, 1003
BciT130I	CCWGG	1 cut(s)	756
BciVI	GTATCC	1 cut(s)	103
BcnI	CCSGG	1 cut(s)	505
BfuI	GTATCC	1 cut(s)	103
BisI	GCNGC	3 cut(s)	142, 675, 1016
BlsI	GCNGC	3 cut(s)	143, 676, 1017
Bme1390I	CCNGG	2 cut(s)	505, 756
Bme18I	GGWCC	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	507
BmiI	GGNNCC	7 cut(s)	369, 508, 877, 888, 901, 1014, 1029
BmrFI	CCNGG	2 cut(s)	505, 756
BmsI	GCATC	2 cut(s)	76, 284
BpiI	GAAGAC	1 cut(s)	577
BplI	GAGNNNNNCTC	2 cut(s)	204, 236
Bpu14I	TTCGAA	1 cut(s)	750
BpuEI	CTTGAG	2 cut(s)	175, 335
BpuMI	CCSGG	1 cut(s)	505
Bsa29I	ATCGAT	1 cut(s)	1071
BsaAI	YACGTR	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	783
BsaJI	CCNNGG	3 cut(s)	71, 921, 927
BsaWI	WCCGGW	2 cut(s)	349, 878
BsaXI	ACNNNNNCTCC	2 cut(s)	1004, 1034
Bsc4I	CCNNNNNNNGG	5 cut(s)	285, 896, 933, 963, 1037
Bse118I	RCCGGY	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	756
BseCI	ATCGAT	1 cut(s)	1071
BseDI	CCNNGG	3 cut(s)	71, 921, 927
BseGI	GGATG	5 cut(s)	67, 184, 275, 301, 434
BseLI	CCNNNNNNNGG	5 cut(s)	285, 896, 933, 963, 1037
BseMII	CTCAG	4 cut(s)	83, 146, 459, 476
BseNI	ACTGG	1 cut(s)	345
BseRI	GAGGAG	4 cut(s)	12, 27, 30, 1001
BseX3I	CGGCCG	1 cut(s)	532
BseXI	GCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	160
Bsh1236I	CGCG	2 cut(s)	146, 672
Bsh1285I	CGRYCG	2 cut(s)	350, 535
BshFI	GGCC	3 cut(s)	534, 632, 926
BshNI	GGYRCC	1 cut(s)	886
BshTI	ACCGGT	1 cut(s)	349
BshVI	ATCGAT	1 cut(s)	1071
BsiEI	CGRYCG	2 cut(s)	350, 535
BsiHKAI	GWGCWC	2 cut(s)	189, 446
BsiSI	CCGG	4 cut(s)	350, 504, 879, 972
BslI	CCNNNNNNNGG	5 cut(s)	285, 896, 933, 963, 1037
BsnI	GGCC	3 cut(s)	534, 632, 926
Bsp119I	TTCGAA	1 cut(s)	750
Bsp1286I	GDGCHC	2 cut(s)	189, 446
Bsp143I	GATC	6 cut(s)	367, 664, 875, 990, 1027, 1068
Bsp19I	CCATGG	2 cut(s)	71, 927
BspACI	CCGC	5 cut(s)	520, 645, 660, 675, 1016
BspANI	GGCC	3 cut(s)	534, 632, 926
BspCNI	CTCAG	4 cut(s)	84, 147, 458, 477
BspDI	ATCGAT	1 cut(s)	1071
BspFNI	CGCG	2 cut(s)	146, 672
BspHI	TCATGA	1 cut(s)	421
BspLI	GGNNCC	7 cut(s)	369, 508, 877, 888, 901, 1014, 1029
BspPI	GGATC	6 cut(s)	362, 375, 870, 883, 1022, 1035
BspT104I	TTCGAA	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	886
BsrFI	RCCGGY	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	345
BssAI	RCCGGY	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	71, 921, 927
BssMI	GATC	6 cut(s)	367, 664, 875, 990, 1027, 1068
BssNI	GRCGYC	1 cut(s)	783
BssT1I	CCWWGG	2 cut(s)	71, 927
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	2 cut(s)	736, 1036
Bst6I	CTCTTC	1 cut(s)	942
BstACI	GRCGYC	1 cut(s)	783
BstBAI	YACGTR	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	750
BstDEI	CTNAG	4 cut(s)	92, 155, 445, 485
BstDSI	CCRYGG	2 cut(s)	71, 927
BstF5I	GGATG	5 cut(s)	67, 184, 275, 301, 434
BstFNI	CGCG	2 cut(s)	146, 672
BstHHI	GCGC	3 cut(s)	146, 674, 1043
BstKTI	GATC	6 cut(s)	370, 667, 878, 993, 1030, 1071
BstMBI	GATC	6 cut(s)	367, 664, 875, 990, 1027, 1068
BstMCI	CGRYCG	2 cut(s)	350, 535
BstMWI	GCNNNNNNNGC	1 cut(s)	560
BstNI	CCWGG	1 cut(s)	756
BstNSI	RCATGY	2 cut(s)	380, 793
BstSCI	CCNGG	2 cut(s)	503, 754
BstUI	CGCG	2 cut(s)	146, 672
BstV1I	GCAGC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	577
BstX2I	RGATCY	3 cut(s)	367, 875, 1027
BstYI	RGATCY	3 cut(s)	367, 875, 1027
BstZI	CGGCCG	1 cut(s)	532
Bsu15I	ATCGAT	1 cut(s)	1071
BsuI	GTATCC	1 cut(s)	103
BsuRI	GGCC	3 cut(s)	534, 632, 926
BsuTUI	ATCGAT	1 cut(s)	1071
BtgI	CCRYGG	2 cut(s)	71, 927
BtsCI	GGATG	5 cut(s)	67, 184, 275, 301, 434
CciI	TCATGA	1 cut(s)	421
CfoI	GCGC	3 cut(s)	146, 674, 1043
Cfr10I	RCCGGY	1 cut(s)	349
Cfr13I	GGNCC	1 cut(s)	507
ClaI	ATCGAT	1 cut(s)	1071
CseI	GACGC	1 cut(s)	140
CsiI	ACCWGGT	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	380, 465, 887
CspAI	ACCGGT	1 cut(s)	349
CviAII	CATG	9 cut(s)	72, 83, 175, 377, 422, 726, 790, 872, 928
CviQI	GTAC	3 cut(s)	380, 465, 887
DdeI	CTNAG	4 cut(s)	92, 155, 445, 485
DpnI	GATC	6 cut(s)	369, 666, 877, 992, 1029, 1070
DpnII	GATC	6 cut(s)	367, 664, 875, 990, 1027, 1068
EaeI	YGGCCR	1 cut(s)	532
EagI	CGGCCG	1 cut(s)	532
Eam1104I	CTCTTC	1 cut(s)	942
EarI	CTCTTC	1 cut(s)	942
Ecl136II	GAGCTC	2 cut(s)	187, 444
EclXI	CGGCCG	1 cut(s)	532
Eco130I	CCWWGG	2 cut(s)	71, 927
Eco24I	GRGCYC	2 cut(s)	189, 446
Eco47I	GGWCC	1 cut(s)	507
Eco52I	CGGCCG	1 cut(s)	532
Eco53kI	GAGCTC	2 cut(s)	187, 444
Eco57I	CTGAAG	1 cut(s)	33
EcoICRI	GAGCTC	2 cut(s)	187, 444
EcoRII	CCWGG	1 cut(s)	754
EcoT14I	CCWWGG	2 cut(s)	71, 927
EcoT22I	ATGCAT	1 cut(s)	277
EcoT38I	GRGCYC	2 cut(s)	189, 446
ErhI	CCWWGG	2 cut(s)	71, 927
FaeI	CATG	9 cut(s)	75, 86, 178, 380, 425, 729, 793, 875, 931
FatI	CATG	9 cut(s)	71, 82, 174, 376, 421, 725, 789, 871, 927
FblI	GTMKAC	1 cut(s)	786
Fnu4HI	GCNGC	3 cut(s)	142, 675, 1016
FokI	GGATG	5 cut(s)	54, 191, 262, 308, 421
FriOI	GRGCYC	2 cut(s)	189, 446
Fsp4HI	GCNGC	3 cut(s)	142, 675, 1016
GlaI	GCGC	3 cut(s)	145, 673, 1042
GluI	GCNGC	3 cut(s)	142, 675, 1016
HaeIII	GGCC	3 cut(s)	534, 632, 926
HapII	CCGG	4 cut(s)	350, 504, 879, 972
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	3 cut(s)	146, 674, 1043
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	9 cut(s)	75, 86, 178, 380, 425, 729, 793, 875, 931
Hin6I	GCGC	3 cut(s)	144, 672, 1041
HinP1I	GCGC	3 cut(s)	144, 672, 1041
HinfI	GANTC	8 cut(s)	162, 310, 326, 487, 500, 597, 747, 1059
HpaII	CCGG	4 cut(s)	350, 504, 879, 972
HphI	GGTGA	7 cut(s)	416, 473, 517, 592, 627, 634, 748
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	6 cut(s)	13, 93, 156, 265, 448, 805
Hpy188III	TCNNGA	7 cut(s)	192, 210, 293, 307, 314, 422, 594
Hpy8I	GTNNAC	1 cut(s)	787
Hpy99I	CGWCG	2 cut(s)	533, 785
HpyAV	CCTTC	6 cut(s)	181, 556, 698, 702, 706, 935
HpyCH4III	ACNGT	2 cut(s)	736, 1036
HpyCH4IV	ACGT	3 cut(s)	115, 387, 783
HpyCH4V	TGCA	3 cut(s)	141, 275, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	560
HpyF3I	CTNAG	4 cut(s)	92, 155, 445, 485
HpySE526I	ACGT	3 cut(s)	115, 387, 783
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	9 cut(s)	75, 86, 178, 380, 425, 729, 793, 875, 931
HspAI	GCGC	3 cut(s)	144, 672, 1041
KpnI	GGTACC	1 cut(s)	890
Kzo9I	GATC	6 cut(s)	367, 664, 875, 990, 1027, 1068
LmnI	GCTCC	2 cut(s)	40, 1012
Lsp1109I	GCAGC	1 cut(s)	153
LweI	GCATC	2 cut(s)	76, 284
MabI	ACCWGGT	1 cut(s)	754
MaeII	ACGT	3 cut(s)	115, 387, 783
MaeIII	GTNAC	3 cut(s)	116, 796, 916
MalI	GATC	6 cut(s)	369, 666, 877, 992, 1029, 1070
MboI	GATC	6 cut(s)	367, 664, 875, 990, 1027, 1068
MboII	GAAGA	5 cut(s)	48, 212, 577, 659, 959
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	3 cut(s)	367, 875, 1027
MhlI	GDGCHC	2 cut(s)	189, 446
MlyI	GAGTC	2 cut(s)	496, 1068
MmeI	TCCRAC	4 cut(s)	534, 819, 961, 1055
Mph1103I	ATGCAT	1 cut(s)	277
MseI	TTAA	2 cut(s)	611, 1075
MslI	CAYNNNNRTG	2 cut(s)	173, 870
MspI	CCGG	4 cut(s)	350, 504, 879, 972
MspR9I	CCNGG	2 cut(s)	505, 756
MunI	CAATTG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	756
MvnI	CGCG	2 cut(s)	146, 672
MwoI	GCNNNNNNNGC	1 cut(s)	560
NciI	CCSGG	1 cut(s)	505
NcoI	CCATGG	2 cut(s)	71, 927
NdeII	GATC	6 cut(s)	367, 664, 875, 990, 1027, 1068
NlaIII	CATG	9 cut(s)	75, 86, 178, 380, 425, 729, 793, 875, 931
NlaIV	GGNNCC	7 cut(s)	369, 508, 877, 888, 901, 1014, 1029
NmuCI	GTSAC	1 cut(s)	916
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	2 cut(s)	380, 793
NspV	TTCGAA	1 cut(s)	750
PagI	TCATGA	1 cut(s)	421
PciI	ACATGT	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	2 cut(s)	343, 1068
PfeI	GAWTC	6 cut(s)	162, 310, 326, 500, 597, 747
PflMI	CCANNNNNTGG	1 cut(s)	1037
PinAI	ACCGGT	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	143, 676, 1017
PleI	GAGTC	2 cut(s)	495, 1067
PpsI	GAGTC	2 cut(s)	495, 1067
Ppu21I	YACGTR	1 cut(s)	116
PscI	ACATGT	1 cut(s)	789
Psp124BI	GAGCTC	2 cut(s)	189, 446
Psp1406I	AACGTT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	754
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	7 cut(s)	369, 508, 877, 888, 901, 1014, 1029
PspPI	GGNCC	1 cut(s)	507
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
PsuI	RGATCY	3 cut(s)	367, 875, 1027
RsaI	GTAC	3 cut(s)	381, 466, 888
RsaNI	GTAC	3 cut(s)	380, 465, 887
RseI	CAYNNNNRTG	2 cut(s)	173, 870
SacI	GAGCTC	2 cut(s)	189, 446
SaqAI	TTAA	2 cut(s)	611, 1075
SatI	GCNGC	3 cut(s)	142, 675, 1016
Sau3AI	GATC	6 cut(s)	367, 664, 875, 990, 1027, 1068
Sau96I	GGNCC	1 cut(s)	507
SchI	GAGTC	2 cut(s)	496, 1068
ScrFI	CCNGG	2 cut(s)	505, 756
SduI	GDGCHC	2 cut(s)	189, 446
SexAI	ACCWGGT	1 cut(s)	754
SfaNI	GCATC	2 cut(s)	76, 284
SfuI	TTCGAA	1 cut(s)	750
SinI	GGWCC	1 cut(s)	507
SmiMI	CAYNNNNRTG	2 cut(s)	173, 870
SmlI	CTYRAG	2 cut(s)	190, 314
SmoI	CTYRAG	2 cut(s)	190, 314
SsiI	CCGC	5 cut(s)	520, 645, 660, 675, 1016
SstI	GAGCTC	2 cut(s)	189, 446
StyD4I	CCNGG	2 cut(s)	503, 754
StyI	CCWWGG	2 cut(s)	71, 927
TaaI	ACNGT	2 cut(s)	736, 1036
TaiI	ACGT	3 cut(s)	118, 390, 786
TaqI	TCGA	8 cut(s)	100, 346, 595, 750, 780, 993, 1062, 1071
TaqII	GACCGA	1 cut(s)	935
TatI	WGTACW	1 cut(s)	464
TauI	GCSGC	2 cut(s)	677, 1018
TfiI	GAWTC	6 cut(s)	162, 310, 326, 500, 597, 747
Tru1I	TTAA	2 cut(s)	611, 1075
Tru9I	TTAA	2 cut(s)	611, 1075
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	916
TspDTI	ATGAA	6 cut(s)	163, 312, 423, 438, 577, 860
TspGWI	ACGGA	1 cut(s)	427
Van91I	CCANNNNNTGG	1 cut(s)	1037
VpaK11BI	GGWCC	1 cut(s)	507
XapI	RAATTY	3 cut(s)	243, 493, 827
XceI	RCATGY	2 cut(s)	380, 793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	786
ZraI	GACGTC	1 cut(s)	784
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.