Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0008994

Physical Location & Seq

Genomic Coordinates Reverse (-)

71309595 .. 71312468

Gene Structure 2874 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG444200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTATGGCAAGTTTGGCTTGCATTGCTTCCCTGCTCATCTCACTAACATGGATTGCTGAGGCTAGAATCCCTGGTGTCTACTCCGGTGGTGCTTGGCAAGGTGCTCATGCCACCTTTTATGGAGGCTCTGATGCCTCAGGCACCATGGGAGGTGCTTGTGGATACGGTAATCTTTACAGCCAGGGCTACGGAGTGAGCACTGCTGCGCTGAGCACGGCTCTGTTCAACAATGGCCTCAGCTGCGGTTCATGCTTTGAAATCAAGTGCGCAAACGACCCGAAATGGTGTCACTCTGGAAGTCCATCTATCTTCATCACTGCCACTAACTTTTGCCCACCCAACTTTGCTCAGCCAAGCGACAATGGCGGATGGTGCAACCCTCCCAGGCCTCACTTTGACCTTGCTATGCCCATGTTTCTTAAGATCGCTGAGTACCGCGCTGGGATTGTCCCTGTTTCCTACCGTAGGGTGCCATGCCGCAAGCGCGGAGGGATCAGGTTCACCATCAACGGCTTCCGTTACTTCAACTTGGTTCTGGTCTCCAACGTCGCGGGTGCAGGGGATATCGTGAGGGTGAGCGTGAAAGGGTCCAGGACTGGCTGGATGAGCCTGAGCCGCAACTGGGGTCAGAACTGGCAGTCGAACTCGGTTCTGGTTGGTCAGTCACTCTCCTTCAGGGTCACAGGCAGTGACCGACGCTCCTCCACCTCGTGGAACATAGTCCCAGCTAACTGGCAGTTCGGTCAGACTTTCACCGGAAAGAATTTCCGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

259

Amino Acids

27.9

Weight (kDa)

9.68

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	38 - 161	3.8e-08	EXPB1-like domain 1
DPBB_1	PF03330	68 - 155	3.4e-21	Lytic transglycolase
Expansin_C	PF01357	166 - 243	1.1e-27	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28950
fragaria_vesca	FvH4_3g36410
malus_domestica	MD00G1013600.v1.1 MD03G1090700.v1.1 MD11G1105700.v1.1
prunus_persica	Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1
pyrus_communis	pycom03g07260 pycom11g08720
rosa_chinensis	RchiOBHm_Chr5g0065301
rosa_laevigata	RLG00000035779
rosa_multiflora	Rmu_co8233643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015890 Rroxscaffold_6G00414450
rosa_rugosa	Rorug05G0371100
rosa_samantha	Rh3AG128600 Rh5AG428900 Rh5BG444200 Rh5CG466400 Rh5DG456400
rosa_wichuraiana	Rw5G040260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	271
AccB1I	GGYRCC	2 cut(s)	143, 472
AccB7I	CCANNNNNTGG	1 cut(s)	714
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	3 cut(s)	441, 489, 554
AciI	CCGC	7 cut(s)	246, 369, 439, 481, 489, 554, 619
AclWI	GGATC	1 cut(s)	503
AcsI	RAATTY	1 cut(s)	766
AcuI	CTGAAG	1 cut(s)	661
AdeI	CACNNNGTG	1 cut(s)	714
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	3 cut(s)	468, 625, 714
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	229, 260, 529
AjnI	CCWGG	4 cut(s)	73, 183, 386, 593
AluBI	AGCT	2 cut(s)	243, 731
AluI	AGCT	2 cut(s)	243, 731
Alw21I	GWGCWC	3 cut(s)	109, 203, 218
Alw26I	GTCTC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	503
AoxI	GGCC	2 cut(s)	235, 389
ApeKI	GCWGC	2 cut(s)	206, 243
ApoI	RAATTY	1 cut(s)	766
AspLEI	GCGC	4 cut(s)	211, 272, 443, 489
AspS9I	GGNCC	1 cut(s)	591
AsuHPI	GGTGA	3 cut(s)	496, 589, 748
AvaII	GGWCC	1 cut(s)	591
AxyI	CCTNAGG	1 cut(s)	139
BanI	GGYRCC	2 cut(s)	143, 472
BauI	CACGAG	1 cut(s)	712
Bbv12I	GWGCWC	3 cut(s)	109, 203, 218
BbvCI	CCTCAGC	2 cut(s)	60, 239
BbvI	GCAGC	2 cut(s)	193, 230
BccI	CCATC	3 cut(s)	313, 366, 515
BceAI	ACGGC	2 cut(s)	234, 529
BciT130I	CCWGG	4 cut(s)	75, 185, 388, 595
BciVI	GTATCC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	158
BisI	GCNGC	4 cut(s)	207, 244, 481, 619
BlpI	GCTNAGC	2 cut(s)	212, 351
BlsI	GCNGC	4 cut(s)	208, 245, 482, 620
Bme1390I	CCNGG	4 cut(s)	75, 185, 388, 595
Bme18I	GGWCC	1 cut(s)	591
BmgT120I	GGNCC	1 cut(s)	591
BmiI	GGNNCC	3 cut(s)	145, 474, 592
BmrFI	CCNGG	4 cut(s)	75, 185, 388, 595
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	634
BplI	GAGNNNNNCTC	2 cut(s)	205, 237
Bpu10I	CCTNAGC	3 cut(s)	60, 239, 614
Bpu1102I	GCTNAGC	2 cut(s)	212, 351
BsaI	GGTCTC	1 cut(s)	547
BsaJI	CCNNGG	4 cut(s)	73, 147, 184, 386
BsaWI	WCCGGW	2 cut(s)	86, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	686, 716
Bsc4I	CCNNNNNNNGG	3 cut(s)	468, 625, 714
Bse1I	ACTGG	4 cut(s)	604, 629, 641, 740
Bse21I	CCTNAGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	4 cut(s)	75, 185, 388, 595
BseDI	CCNNGG	4 cut(s)	73, 147, 184, 386
BseGI	GGATG	2 cut(s)	377, 612
BseLI	CCNNNNNNNGG	3 cut(s)	468, 625, 714
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	7 cut(s)	51, 153, 203, 253, 365, 423, 605
BseNI	ACTGG	4 cut(s)	604, 629, 641, 740
BseRI	GAGGAG	1 cut(s)	694
BseXI	GCAGC	2 cut(s)	193, 230
BseYI	CCCAGC	2 cut(s)	443, 727
BsgI	GTGCAG	1 cut(s)	579
Bsh1236I	CGCG	3 cut(s)	441, 489, 554
BshFI	GGCC	2 cut(s)	237, 391
BshNI	GGYRCC	2 cut(s)	143, 472
BsiHKAI	GWGCWC	3 cut(s)	109, 203, 218
BsiSI	CCGG	2 cut(s)	87, 759
BslFI	GGGAC	2 cut(s)	437, 710
BslI	CCNNNNNNNGG	3 cut(s)	468, 625, 714
BsmAI	GTCTC	1 cut(s)	547
BsmFI	GGGAC	2 cut(s)	437, 710
BsnI	GGCC	2 cut(s)	237, 391
Bso31I	GGTCTC	1 cut(s)	547
Bsp1286I	GDGCHC	3 cut(s)	109, 203, 218
Bsp143I	GATC	2 cut(s)	426, 495
Bsp1720I	GCTNAGC	2 cut(s)	212, 351
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	7 cut(s)	246, 369, 439, 481, 489, 554, 619
BspANI	GGCC	2 cut(s)	237, 391
BspCNI	CTCAG	7 cut(s)	52, 152, 204, 252, 364, 424, 606
BspFNI	CGCG	3 cut(s)	441, 489, 554
BspLI	GGNNCC	3 cut(s)	145, 474, 592
BspPI	GGATC	1 cut(s)	503
BspT107I	GGYRCC	2 cut(s)	143, 472
BspTI	CTTAAG	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	24
BsrI	ACTGG	4 cut(s)	604, 629, 641, 740
BssECI	CCNNGG	4 cut(s)	73, 147, 184, 386
BssMI	GATC	2 cut(s)	426, 495
BssSI	CACGAG	1 cut(s)	712
BssT1I	CCWWGG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	712
Bst2UI	CCWGG	4 cut(s)	75, 185, 388, 595
Bst4CI	ACNGT	2 cut(s)	170, 467
BstAFI	CTTAAG	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	22, 485
BstDEI	CTNAG	7 cut(s)	60, 139, 212, 239, 351, 432, 614
BstDSI	CCRYGG	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	377, 612
BstFNI	CGCG	3 cut(s)	441, 489, 554
BstHHI	GCGC	4 cut(s)	211, 272, 443, 489
BstKTI	GATC	2 cut(s)	429, 498
BstMAI	GTCTC	1 cut(s)	547
BstMBI	GATC	2 cut(s)	426, 495
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 26, 243, 252, 366, 375, 486, 609, 618
BstNI	CCWGG	4 cut(s)	75, 185, 388, 595
BstSCI	CCNGG	4 cut(s)	73, 183, 386, 593
BstUI	CGCG	3 cut(s)	441, 489, 554
BstV1I	GCAGC	2 cut(s)	193, 230
BstXI	CCANNNNNNTGG	1 cut(s)	735
Bsu36I	CCTNAGG	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	237, 391
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	2 cut(s)	377, 612
BtsI	GCAGTG	3 cut(s)	201, 318, 697
BtsIMutI	CAGTG	3 cut(s)	201, 318, 697
Cac8I	GCNNGC	2 cut(s)	22, 485
CfoI	GCGC	4 cut(s)	211, 272, 443, 489
Cfr13I	GGNCC	1 cut(s)	591
CseI	GACGC	1 cut(s)	708
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	6 cut(s)	51, 110, 148, 252, 415, 477
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	7 cut(s)	60, 139, 212, 239, 351, 432, 614
DpnI	GATC	2 cut(s)	428, 497
DpnII	GATC	2 cut(s)	426, 495
DraIII	CACNNNGTG	1 cut(s)	714
EciI	GGCGGA	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	547
Eco32I	GATATC	1 cut(s)	568
Eco47I	GGWCC	1 cut(s)	591
Eco57I	CTGAAG	1 cut(s)	661
Eco81I	CCTNAGG	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoRII	CCWGG	4 cut(s)	73, 183, 386, 593
EcoRV	GATATC	1 cut(s)	568
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	6 cut(s)	54, 113, 151, 255, 418, 480
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	2 cut(s)	437, 710
FatI	CATG	6 cut(s)	50, 109, 147, 251, 414, 476
FauI	CCCGC	1 cut(s)	547
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	207, 244, 481, 619
FokI	GGATG	2 cut(s)	384, 619
Fsp4HI	GCNGC	4 cut(s)	207, 244, 481, 619
FspBI	CTAG	1 cut(s)	66
FspI	TGCGCA	1 cut(s)	271
GlaI	GCGC	4 cut(s)	210, 271, 442, 488
GluI	GCNGC	4 cut(s)	207, 244, 481, 619
GsaI	CCCAGC	2 cut(s)	447, 731
HaeIII	GGCC	2 cut(s)	237, 391
HapII	CCGG	2 cut(s)	87, 759
HgaI	GACGC	1 cut(s)	708
HhaI	GCGC	4 cut(s)	211, 272, 443, 489
Hin1II	CATG	6 cut(s)	54, 113, 151, 255, 418, 480
Hin6I	GCGC	4 cut(s)	209, 270, 441, 487
HinP1I	GCGC	4 cut(s)	209, 270, 441, 487
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	2 cut(s)	87, 759
HphI	GGTGA	3 cut(s)	496, 589, 748
Hpy166II	GTNNAC	2 cut(s)	82, 504
Hpy188I	TCNGA	4 cut(s)	133, 633, 750, 773
Hpy188III	TCNNGA	2 cut(s)	297, 571
Hpy8I	GTNNAC	2 cut(s)	82, 504
Hpy99I	CGWCG	2 cut(s)	554, 702
HpyAV	CCTTC	1 cut(s)	685
HpyCH4III	ACNGT	2 cut(s)	170, 467
HpyCH4IV	ACGT	1 cut(s)	549
HpyCH4V	TGCA	3 cut(s)	24, 378, 560
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 26, 243, 252, 366, 375, 486, 609, 618
HpyF3I	CTNAG	7 cut(s)	60, 139, 212, 239, 351, 432, 614
HpySE526I	ACGT	1 cut(s)	549
Hsp92II	CATG	6 cut(s)	54, 113, 151, 255, 418, 480
HspAI	GCGC	4 cut(s)	209, 270, 441, 487
Kzo9I	GATC	2 cut(s)	426, 495
LmnI	GCTCC	1 cut(s)	707
Lsp1109I	GCAGC	2 cut(s)	193, 230
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	549
MaeIII	GTNAC	5 cut(s)	290, 521, 666, 682, 692
MalI	GATC	2 cut(s)	428, 497
MboI	GATC	2 cut(s)	426, 495
MboII	GAAGA	1 cut(s)	304
MhlI	GDGCHC	3 cut(s)	109, 203, 218
MluCI	AATT	1 cut(s)	766
MmeI	TCCRAC	1 cut(s)	570
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	2 cut(s)	87, 759
MspR9I	CCNGG	4 cut(s)	75, 185, 388, 595
MvaI	CCWGG	4 cut(s)	75, 185, 388, 595
MvnI	CGCG	3 cut(s)	441, 489, 554
MwoI	GCNNNNNNNGC	9 cut(s)	17, 26, 243, 252, 366, 375, 486, 609, 618
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	2 cut(s)	426, 495
NlaIII	CATG	6 cut(s)	54, 113, 151, 255, 418, 480
NlaIV	GGNNCC	3 cut(s)	145, 474, 592
NmuCI	GTSAC	4 cut(s)	290, 666, 682, 692
NsbI	TGCGCA	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	714
PfoI	TCCNGGA	1 cut(s)	593
PkrI	GCNGC	4 cut(s)	208, 245, 482, 620
Psp6I	CCWGG	4 cut(s)	73, 183, 386, 593
PspFI	CCCAGC	2 cut(s)	443, 727
PspGI	CCWGG	4 cut(s)	73, 183, 386, 593
PspN4I	GGNNCC	3 cut(s)	145, 474, 592
PspPI	GGNCC	1 cut(s)	591
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	4 cut(s)	207, 244, 481, 619
Sau3AI	GATC	2 cut(s)	426, 495
Sau96I	GGNCC	1 cut(s)	591
ScrFI	CCNGG	4 cut(s)	75, 185, 388, 595
SduI	GDGCHC	3 cut(s)	109, 203, 218
SetI	ASST	9 cut(s)	106, 119, 157, 245, 405, 503, 552, 713, 733
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	591
SmiMI	CAYNNNNRTG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	1 cut(s)	766
SseBI	AGGCCT	1 cut(s)	391
SsiI	CCGC	7 cut(s)	246, 369, 439, 481, 489, 554, 619
SspMI	CTAG	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	391
StyD4I	CCNGG	4 cut(s)	73, 183, 386, 593
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	170, 467
TaiI	ACGT	1 cut(s)	552
TaqI	TCGA	1 cut(s)	644
TaqII	GACCGA	2 cut(s)	711, 734
TasI	AATT	1 cut(s)	766
TauI	GCSGC	2 cut(s)	483, 621
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	3 cut(s)	208, 325, 697
TseFI	GTSAC	4 cut(s)	290, 666, 682, 692
TseI	GCWGC	2 cut(s)	206, 243
Tsp45I	GTSAC	4 cut(s)	290, 666, 682, 692
TspDTI	ATGAA	2 cut(s)	240, 304
TspGWI	ACGGA	2 cut(s)	207, 509
TspRI	CASTG	3 cut(s)	208, 325, 697
Van91I	CCANNNNNTGG	1 cut(s)	714
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	766
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.