Rroxscaffold_6G00414450

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0008994
Physical Location & Seq
Reverse (-)
36784680 .. 36786737
2058 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414450.1

Sequence Viewer

Length: 717 bp
ATGGCTTCCCTTCATCTTCTCTGCATTGCTTCACTCGCCTCTCTCCTCATCCTGGCTAATGCCAGAATCCCAGGTCCTTACACCGGTGGCCCCTGGCAGGACGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCTGGAACCATGGGAGGCGCCTGTGGGTACGGAAACCTCTACAGCCAGGGCTACGGAGTCAACACTGCTGCACTGAGCACTGCTCTGTTCAACAATGGCCTCAGCTGCGGTGCTTGCTTTGAGATCAGGTGCGGCGACGACCCCAGGTGGTGCACCCCCGGAAAGCCCTCCATCTTCGTCACCGCCACCAACTTCTGCCCTCCCAACTTCGCTCAGCCCAGCGACAATGGCGGTTGGTGCAACCCTCCCAGGACCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACAAAGCCGGAATCGTCCCCGGTCCCATGCAGAAAGAGGGGAGGGATCAGGTTCACCATCAACGGCCACAAGTACTTCAACCTGGTTCTGATCACCAACGTCGCGGGCGCAGGGGATATCGTGAGCGTGAGCGTGAAGGGCACGAACACCGGGTGGATGCCGATGAGCCGGAACTGGGGGCAAAACTGGCAATCCAATTCCGTCCTGGTGGGCCAGGCACTGTCCTTCAGAGTCAGAGGCAGCGACAGGCGAAGCTCGACGACCTACAACGTGGCACCAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

238

Amino Acids

25.81

Weight (kDa)

8.44

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 37 - 126 2.1e-07 EXPB1-like domain 1
DPBB_1 PF03330 67 - 151 1.1e-19 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 152, 707
AccII CGCG 1 cut(s) 537
AciI CCGC 6 cut(s) 123, 243, 267, 318, 366, 537
AclWI GGATC 1 cut(s) 486
AcoI YGGCCR 1 cut(s) 497
AcuI CTGAAG 1 cut(s) 644
AcyI GRCGYC 2 cut(s) 132, 153
AdeI CACNNNGTG 1 cut(s) 586
AfaI GTAC 3 cut(s) 164, 434, 507
AfiI CCNNNNNNNGG 4 cut(s) 52, 83, 97, 608
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 2 cut(s) 226, 512
AjnI CCWGG 9 cut(s) 51, 70, 92, 180, 278, 383, 514, 637, 646
AluBI AGCT 3 cut(s) 240, 688, 714
AluI AGCT 3 cut(s) 240, 688, 714
Alw21I GWGCWC 2 cut(s) 215, 290
Alw44I GTGCAC 1 cut(s) 286
AlwI GGATC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 653
AoxI GGCC 4 cut(s) 88, 232, 497, 644
ApaLI GTGCAC 1 cut(s) 286
ApeKI GCWGC 4 cut(s) 126, 203, 240, 673
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 2 cut(s) 155, 543
AspS9I GGNCC 5 cut(s) 74, 89, 387, 455, 644
AsuC2I CCSGG 3 cut(s) 294, 453, 584
AsuHPI GGTGA 3 cut(s) 307, 479, 518
AvaII GGWCC 3 cut(s) 74, 387, 455
BaeGI GKGCMC 2 cut(s) 290, 576
BanI GGYRCC 2 cut(s) 152, 707
Bbv12I GWGCWC 2 cut(s) 215, 290
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 138, 190, 227, 685
BccI CCATC 2 cut(s) 314, 498
BceAI ACGGC 2 cut(s) 136, 512
BciT130I CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 516, 639, 648
BclI TGATCA 1 cut(s) 523
BcnI CCSGG 3 cut(s) 294, 453, 584
BfmI CTRYAG 1 cut(s) 175
BfoI RGCGCY 1 cut(s) 156
BisI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 674
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 6 cut(s) 125, 128, 205, 242, 269, 675
BmcAI AGTACT 1 cut(s) 507
Bme18I GGWCC 3 cut(s) 74, 387, 455
BmgT120I GGNCC 5 cut(s) 74, 89, 387, 455, 644
BmiI GGNNCC 6 cut(s) 91, 142, 154, 389, 457, 709
BmrI ACTGGG 1 cut(s) 617
BmsI GCATC 1 cut(s) 580
BmuI ACTGGG 1 cut(s) 617
BplI GAGNNNNNCTC 2 cut(s) 202, 234
Bpu10I CCTNAGC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 3 cut(s) 294, 453, 584
BsaHI GRCGYC 2 cut(s) 132, 153
BsaJI CCNNGG 8 cut(s) 70, 92, 144, 181, 278, 292, 383, 451
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 83, 97, 608
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 612, 624
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 516, 639, 648
BseDI CCNNGG 8 cut(s) 70, 92, 144, 181, 278, 292, 383, 451
BseGI GGATG 2 cut(s) 48, 595
BseLI CCNNNNNNNGG 4 cut(s) 52, 83, 97, 608
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 3 cut(s) 200, 250, 362
BseNI ACTGG 2 cut(s) 612, 624
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 2 cut(s) 290, 576
BseXI GCAGC 4 cut(s) 138, 190, 227, 685
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 537
BshFI GGCC 4 cut(s) 90, 234, 499, 646
BshNI GGYRCC 2 cut(s) 152, 707
BshTI ACCGGT 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 215, 290
BsiSI CCGG 6 cut(s) 84, 294, 441, 453, 583, 602
BslFI GGGAC 2 cut(s) 434, 441
BslI CCNNNNNNNGG 4 cut(s) 52, 83, 97, 608
BsmFI GGGAC 2 cut(s) 434, 441
BsnI GGCC 4 cut(s) 90, 234, 499, 646
Bsp1286I GDGCHC 3 cut(s) 215, 290, 576
Bsp143I GATC 4 cut(s) 258, 423, 478, 523
Bsp1720I GCTNAGC 1 cut(s) 348
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 6 cut(s) 123, 243, 267, 318, 366, 537
BspANI GGCC 4 cut(s) 90, 234, 499, 646
BspCNI CTCAG 3 cut(s) 201, 249, 361
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 6 cut(s) 91, 142, 154, 389, 457, 709
BspPI GGATC 1 cut(s) 486
BspT107I GGYRCC 2 cut(s) 152, 707
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 612, 624
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 8 cut(s) 70, 92, 144, 181, 278, 292, 383, 451
BssMI GATC 4 cut(s) 258, 423, 478, 523
BssNI GRCGYC 2 cut(s) 132, 153
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 516, 639, 648
Bst4CI ACNGT 1 cut(s) 655
BstACI GRCGYC 2 cut(s) 132, 153
BstC8I GCNNGC 2 cut(s) 250, 539
BstDEI CTNAG 3 cut(s) 209, 236, 348
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 48, 595
BstFNI CGCG 1 cut(s) 537
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 2 cut(s) 155, 543
BstKTI GATC 4 cut(s) 261, 426, 481, 526
BstMBI GATC 4 cut(s) 258, 423, 478, 523
BstMWI GCNNNNNNNGC 7 cut(s) 35, 240, 249, 363, 372, 571, 620
BstNI CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 516, 639, 648
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 2 cut(s) 290, 576
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 4 cut(s) 138, 190, 227, 685
BsuRI GGCC 4 cut(s) 90, 234, 499, 646
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 48, 595
BtsI GCAGTG 2 cut(s) 198, 213
BtsIMutI CAGTG 4 cut(s) 198, 206, 213, 651
Cac8I GCNNGC 2 cut(s) 250, 539
CaiI CAGNNNCTG 1 cut(s) 653
CfoI GCGC 2 cut(s) 155, 543
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 5 cut(s) 74, 89, 387, 455, 644
CseI GACGC 2 cut(s) 110, 140
CsiI ACCWGGT 1 cut(s) 514
Csp6I GTAC 3 cut(s) 163, 433, 506
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 4 cut(s) 145, 406, 412, 460
CviQI GTAC 3 cut(s) 163, 433, 506
DdeI CTNAG 3 cut(s) 209, 236, 348
DinI GGCGCC 1 cut(s) 154
DpnI GATC 4 cut(s) 260, 425, 480, 525
DpnII GATC 4 cut(s) 258, 423, 478, 523
DraIII CACNNNGTG 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 497
Eco130I CCWWGG 1 cut(s) 144
Eco32I GATATC 1 cut(s) 551
Eco47I GGWCC 3 cut(s) 74, 387, 455
Eco57I CTGAAG 1 cut(s) 644
EcoO109I RGGNCCY 2 cut(s) 74, 387
EcoRII CCWGG 9 cut(s) 51, 70, 92, 180, 278, 383, 514, 637, 646
EcoRV GATATC 1 cut(s) 551
EcoT14I CCWWGG 1 cut(s) 144
EgeI GGCGCC 1 cut(s) 154
EheI GGCGCC 1 cut(s) 154
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 4 cut(s) 148, 409, 415, 463
FaiI YATR 4 cut(s) 146, 407, 413, 461
FaqI GGGAC 2 cut(s) 434, 441
FatI CATG 4 cut(s) 144, 405, 411, 459
FauI CCCGC 1 cut(s) 530
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 674
FokI GGATG 2 cut(s) 35, 602
Fsp4HI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 674
GlaI GCGC 2 cut(s) 154, 542
GluI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 674
GsaI CCCAGC 1 cut(s) 357
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 4 cut(s) 90, 234, 499, 646
HapII CCGG 6 cut(s) 84, 294, 441, 453, 583, 602
HgaI GACGC 2 cut(s) 110, 140
HhaI GCGC 2 cut(s) 155, 543
Hin1I GRCGYC 2 cut(s) 132, 153
Hin1II CATG 4 cut(s) 148, 409, 415, 463
Hin6I GCGC 2 cut(s) 153, 541
HinP1I GCGC 2 cut(s) 153, 541
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 4 cut(s) 66, 192, 444, 664
HpaII CCGG 6 cut(s) 84, 294, 441, 453, 583, 602
HphI GGTGA 3 cut(s) 307, 479, 518
Hpy166II GTNNAC 3 cut(s) 196, 288, 487
Hpy188I TCNGA 3 cut(s) 523, 663, 669
Hpy188III TCNNGA 3 cut(s) 138, 421, 554
Hpy8I GTNNAC 3 cut(s) 196, 288, 487
Hpy99I CGWCG 4 cut(s) 134, 275, 537, 695
HpyAV CCTTC 4 cut(s) 20, 124, 563, 668
HpyCH4III ACNGT 1 cut(s) 655
HpyCH4IV ACGT 2 cut(s) 532, 703
HpyCH4V TGCA 5 cut(s) 24, 206, 288, 375, 463
HpyF10VI GCNNNNNNNGC 7 cut(s) 35, 240, 249, 363, 372, 571, 620
HpyF3I CTNAG 3 cut(s) 209, 236, 348
HpySE526I ACGT 2 cut(s) 532, 703
Hsp92I GRCGYC 2 cut(s) 132, 153
Hsp92II CATG 4 cut(s) 148, 409, 415, 463
HspAI GCGC 2 cut(s) 153, 541
KasI GGCGCC 1 cut(s) 152
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 4 cut(s) 258, 423, 478, 523
Lsp1109I GCAGC 4 cut(s) 138, 190, 227, 685
LweI GCATC 1 cut(s) 580
MabI ACCWGGT 1 cut(s) 514
MaeII ACGT 2 cut(s) 532, 703
MaeIII GTNAC 1 cut(s) 313
MalI GATC 4 cut(s) 260, 425, 480, 525
MboI GATC 4 cut(s) 258, 423, 478, 523
MboII GAAGA 2 cut(s) 8, 301
MhlI GDGCHC 3 cut(s) 215, 290, 576
MluCI AATT 1 cut(s) 629
Mly113I GGCGCC 1 cut(s) 153
MlyI GAGTC 2 cut(s) 201, 673
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 6 cut(s) 84, 294, 441, 453, 583, 602
MvaI CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 516, 639, 648
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 7 cut(s) 35, 240, 249, 363, 372, 571, 620
NarI GGCGCC 1 cut(s) 153
NciI CCSGG 3 cut(s) 294, 453, 584
NcoI CCATGG 1 cut(s) 144
NdeII GATC 4 cut(s) 258, 423, 478, 523
NlaIII CATG 4 cut(s) 148, 409, 415, 463
NlaIV GGNNCC 6 cut(s) 91, 142, 154, 389, 457, 709
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 2 cut(s) 66, 444
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 6 cut(s) 125, 128, 205, 242, 269, 675
PleI GAGTC 2 cut(s) 200, 672
PluTI GGCGCC 1 cut(s) 156
PpsI GAGTC 2 cut(s) 200, 672
PpuMI RGGWCCY 2 cut(s) 74, 387
Psp5II RGGWCCY 2 cut(s) 74, 387
Psp6I CCWGG 9 cut(s) 51, 70, 92, 180, 278, 383, 514, 637, 646
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 9 cut(s) 51, 70, 92, 180, 278, 383, 514, 637, 646
PspN4I GGNNCC 6 cut(s) 91, 142, 154, 389, 457, 709
PspPI GGNCC 5 cut(s) 74, 89, 387, 455, 644
PspPPI RGGWCCY 2 cut(s) 74, 387
PstNI CAGNNNCTG 1 cut(s) 653
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 3 cut(s) 164, 434, 507
RsaNI GTAC 3 cut(s) 163, 433, 506
RseI CAYNNNNRTG 1 cut(s) 410
SatI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 674
Sau3AI GATC 4 cut(s) 258, 423, 478, 523
Sau96I GGNCC 5 cut(s) 74, 89, 387, 455, 644
ScaI AGTACT 1 cut(s) 507
SchI GAGTC 2 cut(s) 201, 673
SduI GDGCHC 3 cut(s) 215, 290, 576
SexAI ACCWGGT 1 cut(s) 514
SfaNI GCATC 1 cut(s) 580
SfcI CTRYAG 1 cut(s) 175
SfoI GGCGCC 1 cut(s) 154
SgrAI CRCCGGYG 1 cut(s) 83
SinI GGWCC 3 cut(s) 74, 387, 455
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 1 cut(s) 629
SsiI CCGC 6 cut(s) 123, 243, 267, 318, 366, 537
SspDI GGCGCC 1 cut(s) 152
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 655
TaiI ACGT 2 cut(s) 535, 706
TaqI TCGA 2 cut(s) 396, 690
TasI AATT 1 cut(s) 629
TatI WGTACW 2 cut(s) 432, 505
TauI GCSGC 2 cut(s) 126, 270
TfiI GAWTC 2 cut(s) 66, 444
TscAI CASTG 4 cut(s) 205, 213, 220, 658
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 126, 203, 240, 673
Tsp45I GTSAC 1 cut(s) 313
TspGWI ACGGA 3 cut(s) 180, 204, 623
TspRI CASTG 4 cut(s) 205, 213, 220, 658
VneI GTGCAC 1 cut(s) 286
VpaK11BI GGWCC 3 cut(s) 74, 387, 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 635
ZrmI AGTACT 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.