Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8233643.1

Orthogroup ID

OG0008994

Physical Location & Seq

Genomic Coordinates Forward (+)

188 .. 760

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8233643.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 479 bp

atggctatggcaagtttggcttgcattgcttccctgctcatctcactgacatggattgctgaggctagaatccctggtgtctactccggtggtgcttggcaaggtgctcatgccaccttttatggaggctctgatgcctcaggcaccatgggaggtgcttgtggatacggtaatctttacagccagggctacggagtgagcactgctgcgctgagcacggctctgttcaacaatggcctcagctgcggttcatgctttgaaatcaagtgcgcaaatgacccgaaatggtgtcactctggaagtccatctatcttcatcactgccactaacttttgcccacccaactttgctcagccaagcgacaatggcggatggtgcaaccctcccaggcctcactttgaccttgctatgcccatgtttcttaagatcgctgagtaccgcgctgggattgtccctgtttcctaccgtaggttagtaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

159

Amino Acids

16.72

Weight (kDa)

7.54

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28950
fragaria_vesca	FvH4_3g36410
malus_domestica	MD00G1013600.v1.1 MD03G1090700.v1.1 MD11G1105700.v1.1
prunus_persica	Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1
pyrus_communis	pycom03g07260 pycom11g08720
rosa_chinensis	RchiOBHm_Chr5g0065301
rosa_laevigata	RLG00000035779
rosa_multiflora	Rmu_co8233643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015890 Rroxscaffold_6G00414450
rosa_rugosa	Rorug05G0371100
rosa_samantha	Rh3AG128600 Rh5AG428900 Rh5BG444200 Rh5CG466400 Rh5DG456400
rosa_wichuraiana	Rw5G040260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	441
AciI	CCGC	3 cut(s)	246, 369, 439
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	468
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	229, 260
AjnI	CCWGG	3 cut(s)	73, 183, 386
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw21I	GWGCWC	3 cut(s)	109, 203, 218
AoxI	GGCC	2 cut(s)	235, 389
ApeKI	GCWGC	2 cut(s)	206, 243
AspLEI	GCGC	3 cut(s)	211, 272, 443
AxyI	CCTNAGG	1 cut(s)	139
BanI	GGYRCC	1 cut(s)	143
Bbv12I	GWGCWC	3 cut(s)	109, 203, 218
BbvCI	CCTCAGC	2 cut(s)	60, 239
BbvI	GCAGC	2 cut(s)	193, 230
BccI	CCATC	2 cut(s)	313, 366
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	3 cut(s)	75, 185, 388
BciVI	GTATCC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	158
BisI	GCNGC	2 cut(s)	207, 244
BlpI	GCTNAGC	2 cut(s)	212, 351
BlsI	GCNGC	2 cut(s)	208, 245
Bme1390I	CCNGG	3 cut(s)	75, 185, 388
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	3 cut(s)	75, 185, 388
BmsI	GCATC	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	205, 237
Bpu10I	CCTNAGC	2 cut(s)	60, 239
Bpu1102I	GCTNAGC	2 cut(s)	212, 351
BsaJI	CCNNGG	4 cut(s)	73, 147, 184, 386
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse21I	CCTNAGG	1 cut(s)	139
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	3 cut(s)	75, 185, 388
BseDI	CCNNGG	4 cut(s)	73, 147, 184, 386
BseGI	GGATG	1 cut(s)	377
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	6 cut(s)	51, 153, 203, 253, 365, 423
BseXI	GCAGC	2 cut(s)	193, 230
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	2 cut(s)	237, 391
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	3 cut(s)	109, 203, 218
BsiSI	CCGG	1 cut(s)	87
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	237, 391
Bsp1286I	GDGCHC	3 cut(s)	109, 203, 218
Bsp143I	GATC	1 cut(s)	426
Bsp1720I	GCTNAGC	2 cut(s)	212, 351
Bsp19I	CCATGG	1 cut(s)	147
BspACI	CCGC	3 cut(s)	246, 369, 439
BspANI	GGCC	2 cut(s)	237, 391
BspCNI	CTCAG	6 cut(s)	52, 152, 204, 252, 364, 424
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	143
BspTI	CTTAAG	1 cut(s)	422
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	4 cut(s)	73, 147, 184, 386
BssMI	GATC	1 cut(s)	426
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	75, 185, 388
Bst4CI	ACNGT	2 cut(s)	170, 467
BstAFI	CTTAAG	1 cut(s)	422
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	6 cut(s)	60, 139, 212, 239, 351, 432
BstDSI	CCRYGG	1 cut(s)	147
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	1 cut(s)	377
BstFNI	CGCG	1 cut(s)	441
BstHHI	GCGC	3 cut(s)	211, 272, 443
BstKTI	GATC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	6 cut(s)	17, 26, 243, 252, 366, 375
BstNI	CCWGG	3 cut(s)	75, 185, 388
BstSCI	CCNGG	3 cut(s)	73, 183, 386
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	193, 230
Bsu36I	CCTNAGG	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	158
BsuRI	GGCC	2 cut(s)	237, 391
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	377
BtsI	GCAGTG	2 cut(s)	201, 318
BtsIMutI	CAGTG	3 cut(s)	44, 201, 318
Cac8I	GCNNGC	1 cut(s)	22
CfoI	GCGC	3 cut(s)	211, 272, 443
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	5 cut(s)	51, 110, 148, 252, 415
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	6 cut(s)	60, 139, 212, 239, 351, 432
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
EciI	GGCGGA	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	147
Eco147I	AGGCCT	1 cut(s)	391
Eco81I	CCTNAGG	1 cut(s)	139
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoRII	CCWGG	3 cut(s)	73, 183, 386
EcoT14I	CCWWGG	1 cut(s)	147
ErhI	CCWWGG	1 cut(s)	147
FaeI	CATG	5 cut(s)	54, 113, 151, 255, 418
FaiI	YATR	8 cut(s)	8, 52, 111, 123, 149, 253, 410, 416
FalI	AAGNNNNNCTT	1 cut(s)	36
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	5 cut(s)	50, 109, 147, 251, 414
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	2 cut(s)	207, 244
FokI	GGATG	1 cut(s)	384
Fsp4HI	GCNGC	2 cut(s)	207, 244
FspBI	CTAG	1 cut(s)	66
FspI	TGCGCA	1 cut(s)	271
GlaI	GCGC	3 cut(s)	210, 271, 442
GluI	GCNGC	2 cut(s)	207, 244
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	237, 391
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	3 cut(s)	211, 272, 443
Hin1II	CATG	5 cut(s)	54, 113, 151, 255, 418
Hin6I	GCGC	3 cut(s)	209, 270, 441
HinP1I	GCGC	3 cut(s)	209, 270, 441
HinfI	GANTC	1 cut(s)	69
HpaII	CCGG	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	82
Hpy188I	TCNGA	1 cut(s)	133
Hpy188III	TCNNGA	1 cut(s)	297
Hpy8I	GTNNAC	1 cut(s)	82
HpyCH4III	ACNGT	2 cut(s)	170, 467
HpyCH4V	TGCA	2 cut(s)	24, 378
HpyF10VI	GCNNNNNNNGC	6 cut(s)	17, 26, 243, 252, 366, 375
HpyF3I	CTNAG	6 cut(s)	60, 139, 212, 239, 351, 432
Hsp92II	CATG	5 cut(s)	54, 113, 151, 255, 418
HspAI	GCGC	3 cut(s)	209, 270, 441
Kzo9I	GATC	1 cut(s)	426
Lsp1109I	GCAGC	2 cut(s)	193, 230
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	290
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	1 cut(s)	304
MhlI	GDGCHC	3 cut(s)	109, 203, 218
MnlI	CCTC	7 cut(s)	55, 119, 146, 148, 248, 393, 402
MseI	TTAA	1 cut(s)	423
MslI	CAYNNNNRTG	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	3 cut(s)	75, 185, 388
MvaI	CCWGG	3 cut(s)	75, 185, 388
MvnI	CGCG	1 cut(s)	441
MwoI	GCNNNNNNNGC	6 cut(s)	17, 26, 243, 252, 366, 375
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	426
NlaIII	CATG	5 cut(s)	54, 113, 151, 255, 418
NlaIV	GGNNCC	1 cut(s)	145
NmuCI	GTSAC	1 cut(s)	290
NsbI	TGCGCA	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	69
PkrI	GCNGC	2 cut(s)	208, 245
Psp6I	CCWGG	3 cut(s)	73, 183, 386
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	3 cut(s)	73, 183, 386
PspN4I	GGNNCC	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	243
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	49
SaqAI	TTAA	1 cut(s)	423
SatI	GCNGC	2 cut(s)	207, 244
Sau3AI	GATC	1 cut(s)	426
ScrFI	CCNGG	3 cut(s)	75, 185, 388
SduI	GDGCHC	3 cut(s)	109, 203, 218
SetI	ASST	6 cut(s)	106, 119, 157, 245, 405, 473
SfaNI	GCATC	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	49
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SseBI	AGGCCT	1 cut(s)	391
SsiI	CCGC	3 cut(s)	246, 369, 439
SspMI	CTAG	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	391
StyD4I	CCNGG	3 cut(s)	73, 183, 386
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	170, 467
TfiI	GAWTC	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	423
Tru9I	TTAA	1 cut(s)	423
TscAI	CASTG	3 cut(s)	51, 208, 325
TseFI	GTSAC	1 cut(s)	290
TseI	GCWGC	2 cut(s)	206, 243
Tsp45I	GTSAC	1 cut(s)	290
TspDTI	ATGAA	2 cut(s)	240, 304
TspGWI	ACGGA	1 cut(s)	207
TspRI	CASTG	3 cut(s)	51, 208, 325
Vha464I	CTTAAG	1 cut(s)	422
XagI	CCTNNNNNAGG	1 cut(s)	466
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.