Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008994

Physical Location & Seq

Genomic Coordinates Forward (+)

6831718 .. 6834464

Gene Structure 2747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g08720.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGTGTGGTGAGTGTTTCTACTTGCATTGCTTCTCTAATCATCTCACTAATGTGGGTGGCTGAAGCAAGAATCCCAGGAGTTTACACTGGTGGTGCATGGCAAGGCGCTCATGCCACCTTCTACGGTGGCTCCGACGCCTCCGGAACCATGGGTGGGGCTTGTGGATACGGAAATTTATACAGCCAAGGGTACGGAGTTAACACGGCGGCACTGAGCACAGAGCTGTTCAACAATGGCCTCAGCTGCGGAGCCTGCTTTGAGCTCAAGTGTGCAGACGACCCCAGCTGGTGCCACGCCGGAAGTCCATCTATTTTCATCACTGCCACTAACTTTTGCCCTCCCAATTTTGCCCAACCAAGCGACAATGGCGGATGGTGCAACCCTCCTAGGCCCCACTTCGACCTCGCCATGCCCATGTTCCTTAAGATTGCCGAGTACAGAGCTGGGATCGTCCCTATTTCCTACCGCAGGGTGCCATGCCGGAAGCGCGGAGGGATCAGGTTCACAATCAACGGCTTCCGTTACTCCAACCTGGTTCTGATCAGCAACGTGGCGGGCGCAGGGGATATCGTGCGGGTGAGCGTGAAAGGCGCCAGGACCGACTGGATGAGCATGAGCCGCAACTGGGGTCAAAACTGGCAGTCGAACTCCGTTCTGGTGGGTCAGTCACTTTCCTTCAGGGTCACCGGCAGTGACCGGCGCACTTCCACCTCGTGGAACATCGTCCCCGCACACTGGCAGTTCGGTCAAACATTCACCGGAAAGAACTTCAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006949 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009987 GO:0030054 GO:0030312 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

261

Amino Acids

28.1

Weight (kDa)

9.28

Isoelectric Point (pI)

30.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28950
fragaria_vesca	FvH4_3g36410
malus_domestica	MD00G1013600.v1.1 MD03G1090700.v1.1 MD11G1105700.v1.1
prunus_persica	Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1
pyrus_communis	pycom03g07260 pycom11g08720
rosa_chinensis	RchiOBHm_Chr5g0065301
rosa_laevigata	RLG00000035779
rosa_multiflora	Rmu_co8233643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015890 Rroxscaffold_6G00414450
rosa_rugosa	Rorug05G0371100
rosa_samantha	Rh3AG128600 Rh5AG428900 Rh5BG444200 Rh5CG466400 Rh5DG456400
rosa_wichuraiana	Rw5G040260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	291, 475, 593
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccII	CGCG	1 cut(s)	492
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	9 cut(s)	209, 249, 372, 469, 492, 557, 577, 622, 732
AclWI	GGATC	2 cut(s)	458, 506
AcsI	RAATTY	1 cut(s)	175
AcuI	CTGAAG	3 cut(s)	84, 664, 757
AcyI	GRCGYC	2 cut(s)	138, 594
AdeI	CACNNNGTG	1 cut(s)	717
AfaI	GTAC	2 cut(s)	194, 440
AfiI	CCNNNNNNNGG	5 cut(s)	156, 471, 628, 717, 738
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	3 cut(s)	76, 534, 596
AleI	CACNNNNGTG	1 cut(s)	52
AluBI	AGCT	5 cut(s)	226, 246, 265, 288, 446
AluI	AGCT	5 cut(s)	226, 246, 265, 288, 446
Alw21I	GWGCWC	2 cut(s)	221, 267
AlwI	GGATC	2 cut(s)	458, 506
AlwNI	CAGNNNCTG	1 cut(s)	780
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	2 cut(s)	238, 392
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	175
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	5 cut(s)	110, 492, 563, 596, 705
AspS9I	GGNCC	2 cut(s)	393, 600
AsuHPI	GGTGA	4 cut(s)	22, 592, 679, 751
AvaII	GGWCC	1 cut(s)	600
AvrII	CCTAGG	1 cut(s)	389
BanI	GGYRCC	3 cut(s)	291, 475, 593
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	715
Bbv12I	GWGCWC	2 cut(s)	221, 267
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	2 cut(s)	316, 369
BceAI	ACGGC	2 cut(s)	222, 532
BciT130I	CCWGG	3 cut(s)	78, 536, 598
BciVI	GTATCC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	543
BfaI	CTAG	1 cut(s)	390
BfoI	RGCGCY	2 cut(s)	111, 597
BfrI	CTTAAG	1 cut(s)	425
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	3 cut(s)	210, 247, 622
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	3 cut(s)	211, 248, 623
Bme1390I	CCNGG	3 cut(s)	78, 536, 598
Bme18I	GGWCC	1 cut(s)	600
BmgT120I	GGNCC	2 cut(s)	393, 600
BmiI	GGNNCC	7 cut(s)	133, 148, 253, 293, 395, 477, 595
BmrFI	CCNGG	3 cut(s)	78, 536, 598
BmrI	ACTGGG	1 cut(s)	637
BmuI	ACTGGG	1 cut(s)	637
Bpu10I	CCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	251
BsaHI	GRCGYC	2 cut(s)	138, 594
BsaJI	CCNNGG	4 cut(s)	76, 150, 187, 389
BsaWI	WCCGGW	2 cut(s)	143, 761
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	5 cut(s)	156, 471, 628, 717, 738
Bse118I	RCCGGY	2 cut(s)	689, 699
Bse1I	ACTGG	5 cut(s)	94, 611, 632, 644, 743
Bse3DI	GCAATG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	3 cut(s)	78, 536, 598
BseDI	CCNNGG	4 cut(s)	76, 150, 187, 389
BseGI	GGATG	2 cut(s)	380, 615
BseLI	CCNNNNNNNGG	5 cut(s)	156, 471, 628, 717, 738
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	206, 256
BseNI	ACTGG	5 cut(s)	94, 611, 632, 644, 743
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	2 cut(s)	284, 446
BsgI	GTGCAG	1 cut(s)	294
Bsh1236I	CGCG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	240, 394
BshNI	GGYRCC	3 cut(s)	291, 475, 593
BsiHKAI	GWGCWC	2 cut(s)	221, 267
BsiSI	CCGG	6 cut(s)	144, 300, 484, 690, 700, 762
BslFI	GGGAC	2 cut(s)	440, 713
BslI	CCNNNNNNNGG	5 cut(s)	156, 471, 628, 717, 738
BsmFI	GGGAC	2 cut(s)	440, 713
BsnI	GGCC	2 cut(s)	240, 394
Bsp1286I	GDGCHC	2 cut(s)	221, 267
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	450, 498, 543
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	9 cut(s)	209, 249, 372, 469, 492, 557, 577, 622, 732
BspANI	GGCC	2 cut(s)	240, 394
BspCNI	CTCAG	2 cut(s)	207, 255
BspEI	TCCGGA	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	492
BspLI	GGNNCC	7 cut(s)	133, 148, 253, 293, 395, 477, 595
BspPI	GGATC	2 cut(s)	458, 506
BspT107I	GGYRCC	3 cut(s)	291, 475, 593
BspTI	CTTAAG	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	2 cut(s)	689, 699
BsrI	ACTGG	5 cut(s)	94, 611, 632, 644, 743
BssAI	RCCGGY	2 cut(s)	689, 699
BssECI	CCNNGG	4 cut(s)	76, 150, 187, 389
BssMI	GATC	3 cut(s)	450, 498, 543
BssNI	GRCGYC	2 cut(s)	138, 594
BssSI	CACGAG	1 cut(s)	715
BssT1I	CCWWGG	3 cut(s)	150, 187, 389
Bst2BI	CACGAG	1 cut(s)	715
Bst2UI	CCWGG	3 cut(s)	78, 536, 598
Bst4CI	ACNGT	1 cut(s)	128
BstACI	GRCGYC	2 cut(s)	138, 594
BstAFI	CTTAAG	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	256, 559
BstDEI	CTNAG	2 cut(s)	215, 242
BstDSI	CCRYGG	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	685
BstENI	CCTNNNNNAGG	1 cut(s)	469
BstF5I	GGATG	2 cut(s)	380, 615
BstFNI	CGCG	1 cut(s)	492
BstH2I	RGCGCY	2 cut(s)	111, 597
BstHHI	GCGC	5 cut(s)	110, 492, 563, 596, 705
BstKTI	GATC	3 cut(s)	453, 501, 546
BstMBI	GATC	3 cut(s)	450, 498, 543
BstMWI	GCNNNNNNNGC	7 cut(s)	246, 255, 369, 378, 489, 591, 621
BstNI	CCWGG	3 cut(s)	78, 536, 598
BstPI	GGTNACC	1 cut(s)	685
BstSCI	CCNGG	3 cut(s)	76, 534, 596
BstUI	CGCG	1 cut(s)	492
BstV1I	GCAGC	1 cut(s)	233
BsuI	GTATCC	1 cut(s)	161
BsuRI	GGCC	2 cut(s)	240, 394
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	380, 615
BtsI	GCAGTG	2 cut(s)	321, 700
BtsIMutI	CAGTG	5 cut(s)	87, 212, 321, 700, 736
Cac8I	GCNNGC	2 cut(s)	256, 559
CaiI	CAGNNNCTG	1 cut(s)	780
CfoI	GCGC	5 cut(s)	110, 492, 563, 596, 705
Cfr10I	RCCGGY	2 cut(s)	689, 699
Cfr13I	GGNCC	2 cut(s)	393, 600
CseI	GACGC	1 cut(s)	146
CsiI	ACCWGGT	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	193, 439
CviAII	CATG	7 cut(s)	99, 113, 151, 412, 418, 480, 616
CviQI	GTAC	2 cut(s)	193, 439
DdeI	CTNAG	2 cut(s)	215, 242
DinI	GGCGCC	1 cut(s)	595
DpnI	GATC	3 cut(s)	452, 500, 545
DpnII	GATC	3 cut(s)	450, 498, 543
DraIII	CACNNNGTG	1 cut(s)	717
EciI	GGCGGA	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	3 cut(s)	150, 187, 389
Eco24I	GRGCYC	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	571
Eco47I	GGWCC	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	3 cut(s)	84, 664, 757
Eco91I	GGTNACC	1 cut(s)	685
EcoICRI	GAGCTC	1 cut(s)	265
EcoNI	CCTNNNNNAGG	1 cut(s)	469
EcoO109I	RGGNCCY	1 cut(s)	393
EcoO65I	GGTNACC	1 cut(s)	685
EcoRII	CCWGG	3 cut(s)	76, 534, 596
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	3 cut(s)	150, 187, 389
EcoT38I	GRGCYC	1 cut(s)	267
EgeI	GGCGCC	1 cut(s)	595
EheI	GGCGCC	1 cut(s)	595
ErhI	CCWWGG	3 cut(s)	150, 187, 389
FaeI	CATG	7 cut(s)	102, 116, 154, 415, 421, 483, 619
FaiI	YATR	8 cut(s)	100, 114, 152, 181, 413, 419, 481, 617
FaqI	GGGAC	2 cut(s)	440, 713
FatI	CATG	7 cut(s)	98, 112, 150, 411, 417, 479, 615
FauI	CCCGC	3 cut(s)	550, 570, 739
FbaI	TGATCA	1 cut(s)	543
Fnu4HI	GCNGC	3 cut(s)	210, 247, 622
FokI	GGATG	2 cut(s)	387, 622
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	3 cut(s)	210, 247, 622
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	5 cut(s)	109, 491, 562, 595, 704
GluI	GCNGC	3 cut(s)	210, 247, 622
GsaI	CCCAGC	2 cut(s)	288, 450
HaeII	RGCGCY	2 cut(s)	111, 597
HaeIII	GGCC	2 cut(s)	240, 394
HapII	CCGG	6 cut(s)	144, 300, 484, 690, 700, 762
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	5 cut(s)	110, 492, 563, 596, 705
Hin1I	GRCGYC	2 cut(s)	138, 594
Hin1II	CATG	7 cut(s)	102, 116, 154, 415, 421, 483, 619
Hin6I	GCGC	5 cut(s)	108, 490, 561, 594, 703
HinP1I	GCGC	5 cut(s)	108, 490, 561, 594, 703
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	72, 777
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	6 cut(s)	144, 300, 484, 690, 700, 762
HphI	GGTGA	4 cut(s)	22, 592, 679, 751
Hpy166II	GTNNAC	3 cut(s)	85, 202, 507
Hpy188I	TCNGA	4 cut(s)	136, 543, 776, 782
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	3 cut(s)	85, 202, 507
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	2 cut(s)	130, 688
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	4 cut(s)	27, 98, 275, 381
HpyF10VI	GCNNNNNNNGC	7 cut(s)	246, 255, 369, 378, 489, 591, 621
HpyF3I	CTNAG	2 cut(s)	215, 242
HpySE526I	ACGT	1 cut(s)	552
Hsp92I	GRCGYC	2 cut(s)	138, 594
Hsp92II	CATG	7 cut(s)	102, 116, 154, 415, 421, 483, 619
HspAI	GCGC	5 cut(s)	108, 490, 561, 594, 703
KasI	GGCGCC	1 cut(s)	593
Kpn2I	TCCGGA	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	543
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	450, 498, 543
LmnI	GCTCC	2 cut(s)	137, 251
Lsp1109I	GCAGC	1 cut(s)	233
MabI	ACCWGGT	1 cut(s)	534
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	4 cut(s)	524, 669, 685, 695
MalI	GATC	3 cut(s)	452, 500, 545
MboI	GATC	3 cut(s)	450, 498, 543
MhlI	GDGCHC	2 cut(s)	221, 267
MluCI	AATT	2 cut(s)	175, 346
Mly113I	GGCGCC	1 cut(s)	594
MmeI	TCCRAC	2 cut(s)	159, 555
MnlI	CCTC	7 cut(s)	151, 251, 351, 396, 416, 488, 724
MroI	TCCGGA	1 cut(s)	143
MseI	TTAA	2 cut(s)	201, 426
MslI	CAYNNNNRTG	2 cut(s)	52, 416
MspA1I	CMGCKG	2 cut(s)	246, 288
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	6 cut(s)	144, 300, 484, 690, 700, 762
MspR9I	CCNGG	3 cut(s)	78, 536, 598
MvaI	CCWGG	3 cut(s)	78, 536, 598
MvnI	CGCG	1 cut(s)	492
MwoI	GCNNNNNNNGC	7 cut(s)	246, 255, 369, 378, 489, 591, 621
NarI	GGCGCC	1 cut(s)	594
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	3 cut(s)	450, 498, 543
NlaIII	CATG	7 cut(s)	102, 116, 154, 415, 421, 483, 619
NlaIV	GGNNCC	7 cut(s)	133, 148, 253, 293, 395, 477, 595
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	3 cut(s)	669, 685, 695
OliI	CACNNNNGTG	1 cut(s)	52
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	717
PkrI	GCNGC	3 cut(s)	211, 248, 623
PluTI	GGCGCC	1 cut(s)	597
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	3 cut(s)	76, 534, 596
PspEI	GGTNACC	1 cut(s)	685
PspFI	CCCAGC	2 cut(s)	284, 446
PspGI	CCWGG	3 cut(s)	76, 534, 596
PspN4I	GGNNCC	7 cut(s)	133, 148, 253, 293, 395, 477, 595
PspPI	GGNCC	2 cut(s)	393, 600
PstNI	CAGNNNCTG	1 cut(s)	780
PvuII	CAGCTG	2 cut(s)	246, 288
RsaI	GTAC	2 cut(s)	194, 440
RsaNI	GTAC	2 cut(s)	193, 439
RseI	CAYNNNNRTG	2 cut(s)	52, 416
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	201, 426
SatI	GCNGC	3 cut(s)	210, 247, 622
Sau3AI	GATC	3 cut(s)	450, 498, 543
Sau96I	GGNCC	2 cut(s)	393, 600
ScrFI	CCNGG	3 cut(s)	78, 536, 598
SduI	GDGCHC	2 cut(s)	221, 267
SexAI	ACCWGGT	1 cut(s)	534
SfoI	GGCGCC	1 cut(s)	595
SinI	GGWCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	2 cut(s)	52, 416
SmlI	CTYRAG	2 cut(s)	266, 425
SmoI	CTYRAG	2 cut(s)	266, 425
Sse9I	AATT	2 cut(s)	175, 346
SsiI	CCGC	9 cut(s)	209, 249, 372, 469, 492, 557, 577, 622, 732
SspDI	GGCGCC	1 cut(s)	593
SspMI	CTAG	1 cut(s)	390
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	3 cut(s)	76, 534, 596
StyI	CCWWGG	3 cut(s)	150, 187, 389
TaaI	ACNGT	1 cut(s)	128
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	402, 647
TaqII	GACCGA	2 cut(s)	617, 737
TasI	AATT	2 cut(s)	175, 346
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	2 cut(s)	212, 624
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	2 cut(s)	201, 426
Tru9I	TTAA	2 cut(s)	201, 426
TscAI	CASTG	5 cut(s)	94, 219, 328, 700, 743
TseFI	GTSAC	3 cut(s)	669, 685, 695
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	3 cut(s)	669, 685, 695
TspDTI	ATGAA	1 cut(s)	307
TspGWI	ACGGA	4 cut(s)	186, 210, 512, 643
TspRI	CASTG	5 cut(s)	94, 219, 328, 700, 743
Van91I	CCANNNNNTGG	1 cut(s)	717
Vha464I	CTTAAG	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	600
XagI	CCTNNNNNAGG	1 cut(s)	469
XapI	RAATTY	1 cut(s)	175
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.