Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008994

Physical Location & Seq

Genomic Coordinates Forward (+)

9039476 .. 9040224

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1105700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGCAACAGCCACCTTCTACGGTGGCTCCGACGCCTCCGGAACCATGGGTGGGGCTTGTGGATACGGAAATCTATACAGCCAAGGGTACGGAGTTAACACGGCGGCACTGAGCACAGCGCTGTTTAACAATGGCCTCAGCTGCGGAGCCTGCTTTGAGCTCAAGTGTGCAGACGACCCCAGCTGGTGCCACTCTGGAAGTCCATCTATTTTCATCACCGCCACTAACTTTTGCCCTCCCAATTTTGCCCAACCAAGCGACAATGGCGGATGGTGCAACCCTCCTAGGCCCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATTGCCGAGTACAGAGCTGGGATCGTCCCTGTTTCCTACCGTAGGTTAGTAAAGCTCACGTCTCTGTTTTTTATGCTCTGTTTTTGTTCTCTGTTTTCCTTGCTCTATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

146

Amino Acids

15.6

Weight (kDa)

6.67

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	2 - 93	1.1e-08	EXPB1-like domain 1
DPBB_1	PF03330	34 - 121	1.3e-21	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28950
fragaria_vesca	FvH4_3g36410
malus_domestica	MD00G1013600.v1.1 MD03G1090700.v1.1 MD11G1105700.v1.1
prunus_persica	Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1
pyrus_communis	pycom03g07260 pycom11g08720
rosa_chinensis	RchiOBHm_Chr5g0065301
rosa_laevigata	RLG00000035779
rosa_multiflora	Rmu_co8233643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015890 Rroxscaffold_6G00414450
rosa_rugosa	Rorug05G0371100
rosa_samantha	Rh3AG128600 Rh5AG428900 Rh5BG444200 Rh5CG466400 Rh5DG456400
rosa_wichuraiana	Rw5G040260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	186
AccIII	TCCGGA	1 cut(s)	38
AciI	CCGC	4 cut(s)	104, 144, 219, 267
AclWI	GGATC	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	33
AfaI	GTAC	2 cut(s)	89, 335
AfeI	AGCGCT	1 cut(s)	120
AfiI	CCNNNNNNNGG	2 cut(s)	51, 366
AjiI	CACGTC	1 cut(s)	384
AluBI	AGCT	5 cut(s)	141, 160, 183, 341, 379
AluI	AGCT	5 cut(s)	141, 160, 183, 341, 379
Alw21I	GWGCWC	2 cut(s)	116, 162
Alw26I	GTCTC	1 cut(s)	390
AlwI	GGATC	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	38
Aor51HI	AGCGCT	1 cut(s)	120
AoxI	GGCC	2 cut(s)	133, 287
ApeKI	GCWGC	1 cut(s)	141
AspA2I	CCTAGG	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	208
AvrII	CCTAGG	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	2 cut(s)	116, 162
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	2 cut(s)	211, 264
BceAI	ACGGC	1 cut(s)	117
BciVI	GTATCC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	1 cut(s)	285
BfoI	RGCGCY	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	105, 142
BlnI	CCTAGG	1 cut(s)	284
BlsI	GCNGC	2 cut(s)	106, 143
BmgBI	CACGTC	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	5 cut(s)	28, 43, 148, 188, 290
Bpu10I	CCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	146, 305
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	3 cut(s)	45, 82, 284
BsaWI	WCCGGW	1 cut(s)	38
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 366
BseAI	TCCGGA	1 cut(s)	38
BseDI	CCNNGG	3 cut(s)	45, 82, 284
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	51, 366
BseMII	CTCAG	2 cut(s)	101, 151
BseXI	GCAGC	1 cut(s)	128
BseYI	CCCAGC	2 cut(s)	179, 341
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	2 cut(s)	135, 289
BshNI	GGYRCC	1 cut(s)	186
BsiHKAI	GWGCWC	2 cut(s)	116, 162
BsiSI	CCGG	1 cut(s)	39
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	51, 366
BsmAI	GTCTC	1 cut(s)	390
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	2 cut(s)	135, 289
Bsp1286I	GDGCHC	2 cut(s)	116, 162
Bsp13I	TCCGGA	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	345
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	4 cut(s)	104, 144, 219, 267
BspANI	GGCC	2 cut(s)	135, 289
BspCNI	CTCAG	2 cut(s)	102, 150
BspEI	TCCGGA	1 cut(s)	38
BspLI	GGNNCC	5 cut(s)	28, 43, 148, 188, 290
BspPI	GGATC	1 cut(s)	353
BspT107I	GGYRCC	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	45, 82, 284
BssMI	GATC	1 cut(s)	345
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	3 cut(s)	45, 82, 284
Bst4CI	ACNGT	2 cut(s)	23, 365
BstACI	GRCGYC	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	2 cut(s)	110, 137
BstDSI	CCRYGG	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	364
BstF5I	GGATG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	122
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	1 cut(s)	348
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	345
BstMWI	GCNNNNNNNGC	4 cut(s)	141, 150, 264, 273
BstV1I	GCAGC	1 cut(s)	128
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	2 cut(s)	135, 289
BtgI	CCRYGG	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	384
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	151
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	288
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	88, 334
CviAII	CATG	3 cut(s)	46, 307, 313
CviQI	GTAC	2 cut(s)	88, 334
DdeI	CTNAG	2 cut(s)	110, 137
DpnI	GATC	1 cut(s)	347
DpnII	GATC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	3 cut(s)	45, 82, 284
Eco24I	GRGCYC	1 cut(s)	162
Eco47III	AGCGCT	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoNI	CCTNNNNNAGG	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	288
EcoT14I	CCWWGG	3 cut(s)	45, 82, 284
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	3 cut(s)	45, 82, 284
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	3 cut(s)	49, 310, 316
FaiI	YATR	5 cut(s)	47, 76, 308, 314, 398
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	3 cut(s)	45, 306, 312
Fnu4HI	GCNGC	2 cut(s)	105, 142
FokI	GGATG	1 cut(s)	282
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	105, 142
FspBI	CTAG	1 cut(s)	285
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	105, 142
GsaI	CCCAGC	2 cut(s)	183, 345
HaeII	RGCGCY	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	135, 289
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	49, 310, 316
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	39, 195, 322
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	2 cut(s)	23, 365
HpyCH4IV	ACGT	1 cut(s)	383
HpyCH4V	TGCA	2 cut(s)	170, 276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	141, 150, 264, 273
HpyF3I	CTNAG	2 cut(s)	110, 137
HpySE526I	ACGT	1 cut(s)	383
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	49, 310, 316
HspAI	GCGC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	38
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	345
LmnI	GCTCC	2 cut(s)	32, 146
LpnPI	CCDG	7 cut(s)	52, 163, 169, 180, 193, 327, 366
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	285
MaeII	ACGT	1 cut(s)	383
MalI	GATC	1 cut(s)	347
MboI	GATC	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	116, 162
MluCI	AATT	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	6 cut(s)	46, 146, 246, 291, 311, 329
MroI	TCCGGA	1 cut(s)	38
MseI	TTAA	2 cut(s)	96, 126
MslI	CAYNNNNRTG	1 cut(s)	311
MspA1I	CMGCKG	2 cut(s)	141, 183
MspI	CCGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	141, 150, 264, 273
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	1 cut(s)	345
NlaIII	CATG	3 cut(s)	49, 310, 316
NlaIV	GGNNCC	5 cut(s)	28, 43, 148, 188, 290
NmeAIII	GCCGAG	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	106, 143
Psp124BI	GAGCTC	1 cut(s)	162
PspFI	CCCAGC	2 cut(s)	179, 341
PspN4I	GGNNCC	5 cut(s)	28, 43, 148, 188, 290
PspPI	GGNCC	1 cut(s)	288
PvuII	CAGCTG	2 cut(s)	141, 183
RsaI	GTAC	2 cut(s)	89, 335
RsaNI	GTAC	2 cut(s)	88, 334
RseI	CAYNNNNRTG	1 cut(s)	311
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	96, 126
SatI	GCNGC	2 cut(s)	105, 142
Sau3AI	GATC	1 cut(s)	345
Sau96I	GGNCC	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	116, 162
SetI	ASST	9 cut(s)	17, 143, 162, 185, 303, 343, 371, 381, 386
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	2 cut(s)	161, 320
SmoI	CTYRAG	2 cut(s)	161, 320
Sse9I	AATT	1 cut(s)	241
SsiI	CCGC	4 cut(s)	104, 144, 219, 267
SspMI	CTAG	1 cut(s)	285
SstI	GAGCTC	1 cut(s)	162
StyI	CCWWGG	3 cut(s)	45, 82, 284
TaaI	ACNGT	2 cut(s)	23, 365
TaiI	ACGT	1 cut(s)	386
TaqI	TCGA	1 cut(s)	297
TasI	AATT	1 cut(s)	241
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	107
Tru1I	TTAA	2 cut(s)	96, 126
Tru9I	TTAA	2 cut(s)	96, 126
TscAI	CASTG	1 cut(s)	114
TseI	GCWGC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	202
TspGWI	ACGGA	2 cut(s)	81, 105
TspRI	CASTG	1 cut(s)	114
XagI	CCTNNNNNAGG	1 cut(s)	364
XmaJI	CCTAGG	1 cut(s)	284
XspI	CTAG	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.