Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008994

Physical Location & Seq

Genomic Coordinates Forward (+)

5154971 .. 5158223

Gene Structure 3253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G075100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGTGTGGTGAGTGTTTCTGCTTGCCTTGCCTCTCTACTCATCTCACTAATGTGGGTAGCTGAAGCAAGAATCCCAGGGGTGTACAGTGGGGGTGCATGGGAAGCAGCTCATGCCACCTTCTACGGAGGCTCTGATGCCTCTGGCACCATGGGTGGGGCTTGTGGATATGGAAATCTCTACAGCCAAGGCTATGGCGTGAGCACAGCTGCACTGAGCACTGCCCTCTTCAACAATGGCCTCAGCTGCGGTGCCTGCTTTGAAATCAAGTGTGCAAACGACCCAAACTGGTGCCACTCTGGAAGCCCATCAATTTTCATCACTGCCACCAACTTCTGCCCTCCAAACTTTGCTCAACCAAGCGACAATGGCGGATGGTGCAATCCTCCCAGGCCGCACTTTGACCTGGCCATGCCCATGTTTCTCAAGATTGCCGAGTACAGAGCTGGAATTGTCCCTGTTTCTTACCGTAGGGTGCCATGCCGCAAGCGCGGAGGGATCAGGTTCACTATCAACGGCTTCCGTTACTTCAACCTGGTTTTGGTAAGCAACGTCGCGGGTGCAGGGGATATCGTGCGGGTGAGCGTGAAAGGATCCAAGACTAGCTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTTCTGGTTGGTCAATCGTTGTCCTTCAGGGTCAGAGGCAGTGACAGGCGCACTTCCACCTCATGGAACGTTGTTCCGGCCAATTGGCAGTTCGGTCAAACATTCACCGGGAAGAACTTCAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006949 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009987 GO:0030054 GO:0030312 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

261

Amino Acids

28.02

Weight (kDa)

9.58

Isoelectric Point (pI)

33.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28950
fragaria_vesca	FvH4_3g36410
malus_domestica	MD00G1013600.v1.1 MD03G1090700.v1.1 MD11G1105700.v1.1
prunus_persica	Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1
pyrus_communis	pycom03g07260 pycom11g08720
rosa_chinensis	RchiOBHm_Chr5g0065301
rosa_laevigata	RLG00000035779
rosa_multiflora	Rmu_co8233643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015890 Rroxscaffold_6G00414450
rosa_rugosa	Rorug05G0371100
rosa_samantha	Rh3AG128600 Rh5AG428900 Rh5BG444200 Rh5CG466400 Rh5DG456400
rosa_wichuraiana	Rw5G040260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	146, 251, 291, 475
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccII	CGCG	2 cut(s)	492, 557
AciI	CCGC	7 cut(s)	249, 372, 395, 484, 492, 557, 577
AclI	AACGTT	1 cut(s)	723
AclWI	GGATC	3 cut(s)	506, 588, 601
AcoI	YGGCCR	2 cut(s)	408, 732
AcuI	CTGAAG	3 cut(s)	84, 664, 757
AfaI	GTAC	2 cut(s)	86, 440
AfiI	CCNNNNNNNGG	4 cut(s)	156, 541, 628, 717
AgsI	TTSAA	3 cut(s)	232, 263, 532
AjnI	CCWGG	4 cut(s)	76, 389, 405, 534
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AleI	CACNNNNGTG	1 cut(s)	52
AluBI	AGCT	6 cut(s)	62, 110, 209, 246, 446, 606
AluI	AGCT	6 cut(s)	62, 110, 209, 246, 446, 606
Alw21I	GWGCWC	2 cut(s)	206, 221
AlwI	GGATC	3 cut(s)	506, 588, 601
AlwNI	CAGNNNCTG	1 cut(s)	780
AoxI	GGCC	4 cut(s)	238, 392, 408, 732
ApeKI	GCWGC	3 cut(s)	107, 209, 246
Asp700I	GAANNNNTTC	1 cut(s)	770
AspLEI	GCGC	2 cut(s)	492, 705
AsuC2I	CCSGG	1 cut(s)	763
AsuHPI	GGTGA	3 cut(s)	22, 592, 751
BalI	TGGCCA	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	593
BanI	GGYRCC	4 cut(s)	146, 251, 291, 475
Bbv12I	GWGCWC	2 cut(s)	206, 221
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	119, 196, 233
BccI	CCATC	2 cut(s)	316, 369
BceAI	ACGGC	3 cut(s)	532, 606, 638
BciT130I	CCWGG	4 cut(s)	78, 391, 407, 536
BcnI	CCSGG	1 cut(s)	763
BfaI	CTAG	1 cut(s)	603
BfmI	CTRYAG	1 cut(s)	181
BisI	GCNGC	5 cut(s)	108, 210, 247, 395, 484
BlsI	GCNGC	5 cut(s)	109, 211, 248, 396, 485
Bme1390I	CCNGG	5 cut(s)	78, 391, 407, 536, 763
BmiI	GGNNCC	5 cut(s)	148, 253, 293, 477, 595
BmrFI	CCNGG	5 cut(s)	78, 391, 407, 536, 763
BmrI	ACTGGG	1 cut(s)	637
BmsI	GCATC	1 cut(s)	127
BmuI	ACTGGG	1 cut(s)	637
Bpu10I	CCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	1 cut(s)	763
BsaJI	CCNNGG	5 cut(s)	76, 77, 150, 187, 389
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 541, 628, 717
Bse1I	ACTGG	3 cut(s)	293, 632, 644
BseBI	CCWGG	4 cut(s)	78, 391, 407, 536
BseDI	CCNNGG	5 cut(s)	76, 77, 150, 187, 389
BseGI	GGATG	2 cut(s)	380, 615
BseLI	CCNNNNNNNGG	4 cut(s)	156, 541, 628, 717
BseMII	CTCAG	2 cut(s)	206, 256
BseNI	ACTGG	3 cut(s)	293, 632, 644
BseXI	GCAGC	3 cut(s)	119, 196, 233
BsgI	GTGCAG	2 cut(s)	195, 582
Bsh1236I	CGCG	2 cut(s)	492, 557
BshFI	GGCC	4 cut(s)	240, 394, 410, 734
BshNI	GGYRCC	4 cut(s)	146, 251, 291, 475
BsiHKAI	GWGCWC	2 cut(s)	206, 221
BsiSI	CCGG	2 cut(s)	731, 762
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	4 cut(s)	156, 541, 628, 717
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	4 cut(s)	240, 394, 410, 734
Bsp1286I	GDGCHC	2 cut(s)	206, 221
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	2 cut(s)	498, 593
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	7 cut(s)	249, 372, 395, 484, 492, 557, 577
BspANI	GGCC	4 cut(s)	240, 394, 410, 734
BspCNI	CTCAG	2 cut(s)	207, 255
BspFNI	CGCG	2 cut(s)	492, 557
BspLI	GGNNCC	5 cut(s)	148, 253, 293, 477, 595
BspPI	GGATC	3 cut(s)	506, 588, 601
BspT107I	GGYRCC	4 cut(s)	146, 251, 291, 475
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	3 cut(s)	293, 632, 644
BssECI	CCNNGG	5 cut(s)	76, 77, 150, 187, 389
BssMI	GATC	2 cut(s)	498, 593
BssT1I	CCWWGG	2 cut(s)	150, 187
Bst2UI	CCWGG	4 cut(s)	78, 391, 407, 536
Bst4CI	ACNGT	2 cut(s)	89, 470
Bst6I	CTCTTC	1 cut(s)	233
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	25, 256, 488
BstDEI	CTNAG	2 cut(s)	215, 242
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	380, 615
BstFNI	CGCG	2 cut(s)	492, 557
BstHHI	GCGC	2 cut(s)	492, 705
BstKTI	GATC	2 cut(s)	501, 596
BstMBI	GATC	2 cut(s)	498, 593
BstMWI	GCNNNNNNNGC	9 cut(s)	29, 104, 113, 246, 255, 369, 378, 489, 612
BstNI	CCWGG	4 cut(s)	78, 391, 407, 536
BstSCI	CCNGG	5 cut(s)	76, 389, 405, 534, 761
BstSFI	CTRYAG	1 cut(s)	181
BstUI	CGCG	2 cut(s)	492, 557
BstV1I	GCAGC	3 cut(s)	119, 196, 233
BstX2I	RGATCY	1 cut(s)	593
BstXI	CCANNNNNNTGG	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	4 cut(s)	240, 394, 410, 734
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	380, 615
BtsI	GCAGTG	3 cut(s)	219, 321, 700
BtsIMutI	CAGTG	5 cut(s)	94, 212, 219, 321, 700
Cac8I	GCNNGC	3 cut(s)	25, 256, 488
CaiI	CAGNNNCTG	1 cut(s)	780
CfoI	GCGC	2 cut(s)	492, 705
CsiI	ACCWGGT	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	85, 439
CviAII	CATG	8 cut(s)	99, 113, 151, 412, 418, 480, 616, 717
CviQI	GTAC	2 cut(s)	85, 439
DdeI	CTNAG	2 cut(s)	215, 242
DpnI	GATC	2 cut(s)	500, 595
DpnII	GATC	2 cut(s)	498, 593
EaeI	YGGCCR	2 cut(s)	408, 732
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
EciI	GGCGGA	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	150, 187
Eco32I	GATATC	1 cut(s)	571
Eco57I	CTGAAG	3 cut(s)	84, 664, 757
EcoRII	CCWGG	4 cut(s)	76, 389, 405, 534
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	2 cut(s)	150, 187
ErhI	CCWWGG	2 cut(s)	150, 187
FaeI	CATG	8 cut(s)	102, 116, 154, 415, 421, 483, 619, 720
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	8 cut(s)	98, 112, 150, 411, 417, 479, 615, 716
FauI	CCCGC	2 cut(s)	550, 570
Fnu4HI	GCNGC	5 cut(s)	108, 210, 247, 395, 484
FokI	GGATG	2 cut(s)	387, 622
Fsp4HI	GCNGC	5 cut(s)	108, 210, 247, 395, 484
FspBI	CTAG	1 cut(s)	603
GlaI	GCGC	2 cut(s)	491, 704
GluI	GCNGC	5 cut(s)	108, 210, 247, 395, 484
HaeIII	GGCC	4 cut(s)	240, 394, 410, 734
HapII	CCGG	2 cut(s)	731, 762
HhaI	GCGC	2 cut(s)	492, 705
Hin1II	CATG	8 cut(s)	102, 116, 154, 415, 421, 483, 619, 720
Hin6I	GCGC	2 cut(s)	490, 703
HinP1I	GCGC	2 cut(s)	490, 703
HinfI	GANTC	2 cut(s)	72, 777
HpaII	CCGG	2 cut(s)	731, 762
HphI	GGTGA	3 cut(s)	22, 592, 751
Hpy166II	GTNNAC	2 cut(s)	85, 507
Hpy188I	TCNGA	4 cut(s)	136, 689, 776, 782
Hpy188III	TCNNGA	2 cut(s)	300, 427
Hpy8I	GTNNAC	2 cut(s)	85, 507
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	2 cut(s)	130, 688
HpyCH4III	ACNGT	2 cut(s)	89, 470
HpyCH4IV	ACGT	2 cut(s)	552, 723
HpyCH4V	TGCA	5 cut(s)	98, 212, 275, 381, 563
HpyF10VI	GCNNNNNNNGC	9 cut(s)	29, 104, 113, 246, 255, 369, 378, 489, 612
HpyF3I	CTNAG	2 cut(s)	215, 242
HpySE526I	ACGT	2 cut(s)	552, 723
Hsp92II	CATG	8 cut(s)	102, 116, 154, 415, 421, 483, 619, 720
HspAI	GCGC	2 cut(s)	490, 703
Kzo9I	GATC	2 cut(s)	498, 593
Lsp1109I	GCAGC	3 cut(s)	119, 196, 233
LweI	GCATC	1 cut(s)	127
MabI	ACCWGGT	1 cut(s)	534
MaeI	CTAG	1 cut(s)	603
MaeII	ACGT	2 cut(s)	552, 723
MaeIII	GTNAC	3 cut(s)	524, 623, 695
MalI	GATC	2 cut(s)	500, 595
MboI	GATC	2 cut(s)	498, 593
MboII	GAAGA	2 cut(s)	220, 778
MfeI	CAATTG	1 cut(s)	736
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	206, 221
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	3 cut(s)	312, 450, 736
MluNI	TGGCCA	1 cut(s)	410
Mox20I	TGGCCA	1 cut(s)	410
MroXI	GAANNNNTTC	1 cut(s)	770
MscI	TGGCCA	1 cut(s)	410
MslI	CAYNNNNRTG	2 cut(s)	52, 416
Msp20I	TGGCCA	1 cut(s)	410
MspA1I	CMGCKG	2 cut(s)	209, 246
MspI	CCGG	2 cut(s)	731, 762
MspR9I	CCNGG	5 cut(s)	78, 391, 407, 536, 763
MunI	CAATTG	1 cut(s)	736
MvaI	CCWGG	4 cut(s)	78, 391, 407, 536
MvnI	CGCG	2 cut(s)	492, 557
MwoI	GCNNNNNNNGC	9 cut(s)	29, 104, 113, 246, 255, 369, 378, 489, 612
NciI	CCSGG	1 cut(s)	763
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	2 cut(s)	498, 593
NlaIII	CATG	8 cut(s)	102, 116, 154, 415, 421, 483, 619, 720
NlaIV	GGNNCC	5 cut(s)	148, 253, 293, 477, 595
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	1 cut(s)	695
OliI	CACNNNNGTG	1 cut(s)	52
PasI	CCCWGGG	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	770
PfeI	GAWTC	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	717
PkrI	GCNGC	5 cut(s)	109, 211, 248, 396, 485
Psp1406I	AACGTT	1 cut(s)	723
Psp6I	CCWGG	4 cut(s)	76, 389, 405, 534
PspGI	CCWGG	4 cut(s)	76, 389, 405, 534
PspN4I	GGNNCC	5 cut(s)	148, 253, 293, 477, 595
PstNI	CAGNNNCTG	1 cut(s)	780
PsuI	RGATCY	1 cut(s)	593
PvuII	CAGCTG	2 cut(s)	209, 246
RsaI	GTAC	2 cut(s)	86, 440
RsaNI	GTAC	2 cut(s)	85, 439
RseI	CAYNNNNRTG	2 cut(s)	52, 416
SatI	GCNGC	5 cut(s)	108, 210, 247, 395, 484
Sau3AI	GATC	2 cut(s)	498, 593
ScrFI	CCNGG	5 cut(s)	78, 391, 407, 536, 763
SduI	GDGCHC	2 cut(s)	206, 221
SexAI	ACCWGGT	1 cut(s)	534
SfaNI	GCATC	1 cut(s)	127
SfcI	CTRYAG	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	52, 416
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	3 cut(s)	312, 450, 736
SsiI	CCGC	7 cut(s)	249, 372, 395, 484, 492, 557, 577
SspMI	CTAG	1 cut(s)	603
StyD4I	CCNGG	5 cut(s)	76, 389, 405, 534, 761
StyI	CCWWGG	2 cut(s)	150, 187
TaaI	ACNGT	2 cut(s)	89, 470
TaiI	ACGT	2 cut(s)	555, 726
TaqII	GACCGA	1 cut(s)	737
TasI	AATT	3 cut(s)	312, 450, 736
TatI	WGTACW	2 cut(s)	84, 438
TauI	GCSGC	2 cut(s)	397, 486
TfiI	GAWTC	1 cut(s)	72
TscAI	CASTG	5 cut(s)	94, 219, 226, 328, 700
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	3 cut(s)	107, 209, 246
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	1 cut(s)	307
TspGWI	ACGGA	2 cut(s)	141, 512
TspRI	CASTG	5 cut(s)	94, 219, 226, 328, 700
Van91I	CCANNNNNTGG	1 cut(s)	717
XmnI	GAANNNNTTC	1 cut(s)	770
XspI	CTAG	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.