Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008994

Physical Location & Seq

Genomic Coordinates Forward (+)

7513108 .. 7516755

Gene Structure 3648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1090700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGGTGTGGTGAGTGTTTCTACTTGCATTGCCACTCTACTAATCTCGCTAATGTGGGTGGCTGAAGCAAGAATTCCGGGCGTCTACACCGGTGGCGCATGGCAAGGCGCTCATGCCACCTTCTACGGCGGCTCCGACGCCTCCGGAACCATGGGTGGGGCTTGTGGATATGGAAATCTATACAGCCAGGGGTACGGAGTTAACACCGGGGCCCTGAGCACGGCACTGTTCAACAATGGCCTCAGCTGCGGAGCCTGCTTTGAGATCAAGTGTTCAAACGACCCCCGATGGTGCCACTCTGGAAGTCCATCAATTTTCATCACTGCCACTAACTTTTGCCCTCCCAATTTTGCCCAACCAAGCGACAATGGCGGATGGTGCAACCCTCCTAGGCCCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATTGCCGAGTACAGAGCTGGGATCGTCCCTGTTGCCTACCGTAGGGTGCCATGCCGGAAGCGGGGAGGAATCAGGTTCACGATCAACGGGTTCCGTTACTTCAACCTGGTTCTGATCAGCAACGTCGCGGGCGCAGGGGATATCGTGCGGGTCAGCGTGAAGGGCGCCGGGACTGGCTGGATGAGCATGAGCCGCAACTGGGGCCAGAACTGGCAGTCGAACTCCGTTCTGGTTGGTCAGTCACTGTCCTTCCGGGTCACAGGCAGTGACCGACGCACCTCCACTTCCTGGAACATCGTCCCGGCCAACTGGCAGTTCGGTCAAACATTCACCGGCAAGAACTTCAGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006949 GO:0008150 GO:0009505 GO:0009506 GO:0009653 GO:0009987 GO:0030054 GO:0030312 GO:0032502 GO:0044424 GO:0044444 GO:0044464 GO:0048646 GO:0048856 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

261

Amino Acids

27.99

Weight (kDa)

9.6

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	39 - 162	7e-07	EXPB1-like domain 1
DPBB_1	PF03330	71 - 156	3.8e-20	Lytic transglycolase
Expansin_C	PF01357	167 - 244	1.9e-29	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28950
fragaria_vesca	FvH4_3g36410
malus_domestica	MD00G1013600.v1.1 MD03G1090700.v1.1 MD11G1105700.v1.1
prunus_persica	Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1
pyrus_communis	pycom03g07260 pycom11g08720
rosa_chinensis	RchiOBHm_Chr5g0065301
rosa_laevigata	RLG00000035779
rosa_multiflora	Rmu_co8233643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015890 Rroxscaffold_6G00414450
rosa_rugosa	Rorug05G0371100
rosa_samantha	Rh3AG128600 Rh5AG428900 Rh5BG444200 Rh5CG466400 Rh5DG456400
rosa_wichuraiana	Rw5G040260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	291, 475, 593
AccB7I	CCANNNNNTGG	1 cut(s)	717
AccI	GTMKAC	1 cut(s)	84
AccII	CGCG	1 cut(s)	557
AccIII	TCCGGA	1 cut(s)	143
AciI	CCGC	7 cut(s)	129, 249, 372, 490, 557, 577, 622
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	1 cut(s)	732
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	2 cut(s)	84, 757
AcyI	GRCGYC	3 cut(s)	81, 138, 594
AfaI	GTAC	2 cut(s)	194, 440
AfiI	CCNNNNNNNGG	6 cut(s)	156, 220, 471, 490, 628, 717
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	3 cut(s)	232, 276, 532
AjnI	CCWGG	3 cut(s)	186, 534, 716
AjuI	GAANNNNNNNTTGG	2 cut(s)	728, 760
AluBI	AGCT	2 cut(s)	246, 446
AluI	AGCT	2 cut(s)	246, 446
Alw21I	GWGCWC	1 cut(s)	221
AlwI	GGATC	1 cut(s)	458
AlwNI	CAGNNNCTG	2 cut(s)	673, 780
Aor13HI	TCCGGA	1 cut(s)	143
AoxI	GGCC	5 cut(s)	210, 238, 392, 631, 732
ApaI	GGGCCC	1 cut(s)	214
ApeKI	GCWGC	1 cut(s)	246
ApoI	RAATTY	1 cut(s)	72
AsiGI	ACCGGT	1 cut(s)	89
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	4 cut(s)	98, 110, 563, 596
AspS9I	GGNCC	4 cut(s)	210, 211, 393, 631
AsuC2I	CCSGG	5 cut(s)	78, 208, 598, 683, 731
AsuHPI	GGTGA	2 cut(s)	22, 751
AvrII	CCTAGG	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	214
BanI	GGYRCC	3 cut(s)	291, 475, 593
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	3 cut(s)	282, 316, 369
BceAI	ACGGC	2 cut(s)	142, 237
BciT130I	CCWGG	3 cut(s)	188, 536, 718
BclI	TGATCA	1 cut(s)	543
BcnI	CCSGG	5 cut(s)	78, 208, 598, 683, 731
BfaI	CTAG	1 cut(s)	390
BfoI	RGCGCY	2 cut(s)	111, 597
BisI	GCNGC	3 cut(s)	130, 247, 622
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	3 cut(s)	131, 248, 623
Bme1390I	CCNGG	8 cut(s)	78, 188, 208, 536, 598, 683, 718, 731
BmgT120I	GGNCC	4 cut(s)	210, 211, 393, 631
BmrFI	CCNGG	8 cut(s)	78, 188, 208, 536, 598, 683, 718, 731
BmrI	ACTGGG	1 cut(s)	637
BmuI	ACTGGG	1 cut(s)	637
Bpu10I	CCTNAGC	2 cut(s)	215, 242
BpuEI	CTTGAG	1 cut(s)	410
BpuMI	CCSGG	5 cut(s)	78, 208, 598, 683, 731
BsaHI	GRCGYC	3 cut(s)	81, 138, 594
BsaJI	CCNNGG	4 cut(s)	150, 187, 207, 389
BsaWI	WCCGGW	2 cut(s)	89, 143
BsaXI	ACNNNNNCTCC	2 cut(s)	116, 146
Bsc4I	CCNNNNNNNGG	6 cut(s)	156, 220, 471, 490, 628, 717
Bse118I	RCCGGY	2 cut(s)	89, 761
Bse1I	ACTGG	4 cut(s)	607, 632, 644, 743
Bse3DI	GCAATG	1 cut(s)	27
BseAI	TCCGGA	1 cut(s)	143
BseBI	CCWGG	3 cut(s)	188, 536, 718
BseDI	CCNNGG	4 cut(s)	150, 187, 207, 389
BseGI	GGATG	2 cut(s)	380, 615
BseLI	CCNNNNNNNGG	6 cut(s)	156, 220, 471, 490, 628, 717
BseMI	GCAATG	1 cut(s)	27
BseMII	CTCAG	2 cut(s)	206, 256
BseNI	ACTGG	4 cut(s)	607, 632, 644, 743
BseSI	GKGCMC	1 cut(s)	214
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	446
Bsh1236I	CGCG	1 cut(s)	557
BshFI	GGCC	5 cut(s)	212, 240, 394, 633, 734
BshNI	GGYRCC	3 cut(s)	291, 475, 593
BshTI	ACCGGT	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	9 cut(s)	77, 90, 144, 207, 484, 597, 682, 731, 762
BslFI	GGGAC	3 cut(s)	440, 613, 713
BslI	CCNNNNNNNGG	6 cut(s)	156, 220, 471, 490, 628, 717
BsmFI	GGGAC	3 cut(s)	440, 613, 713
BsnI	GGCC	5 cut(s)	212, 240, 394, 633, 734
Bsp120I	GGGCCC	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	214, 221
Bsp13I	TCCGGA	1 cut(s)	143
Bsp143I	GATC	4 cut(s)	264, 450, 510, 543
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	7 cut(s)	129, 249, 372, 490, 557, 577, 622
BspANI	GGCC	5 cut(s)	212, 240, 394, 633, 734
BspCNI	CTCAG	2 cut(s)	207, 255
BspEI	TCCGGA	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	557
BspPI	GGATC	1 cut(s)	458
BspT107I	GGYRCC	3 cut(s)	291, 475, 593
BsrDI	GCAATG	1 cut(s)	27
BsrFI	RCCGGY	2 cut(s)	89, 761
BsrI	ACTGG	4 cut(s)	607, 632, 644, 743
BssAI	RCCGGY	2 cut(s)	89, 761
BssECI	CCNNGG	4 cut(s)	150, 187, 207, 389
BssMI	GATC	4 cut(s)	264, 450, 510, 543
BssNI	GRCGYC	3 cut(s)	81, 138, 594
BssT1I	CCWWGG	2 cut(s)	150, 389
Bst2UI	CCWGG	3 cut(s)	188, 536, 718
Bst4CI	ACNGT	3 cut(s)	228, 470, 675
BstACI	GRCGYC	3 cut(s)	81, 138, 594
BstC8I	GCNNGC	2 cut(s)	256, 559
BstDEI	CTNAG	2 cut(s)	215, 242
BstDSI	CCRYGG	1 cut(s)	150
BstENI	CCTNNNNNAGG	1 cut(s)	469
BstF5I	GGATG	2 cut(s)	380, 615
BstFNI	CGCG	1 cut(s)	557
BstH2I	RGCGCY	2 cut(s)	111, 597
BstHHI	GCGC	4 cut(s)	98, 110, 563, 596
BstKTI	GATC	4 cut(s)	267, 453, 513, 546
BstMBI	GATC	4 cut(s)	264, 450, 510, 543
BstMWI	GCNNNNNNNGC	8 cut(s)	246, 255, 369, 378, 591, 612, 621, 630
BstNI	CCWGG	3 cut(s)	188, 536, 718
BstSCI	CCNGG	8 cut(s)	76, 186, 206, 534, 596, 681, 716, 729
BstSLI	GKGCMC	1 cut(s)	214
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	1 cut(s)	233
BsuRI	GGCC	5 cut(s)	212, 240, 394, 633, 734
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	380, 615
BtsI	GCAGTG	2 cut(s)	321, 700
BtsIMutI	CAGTG	4 cut(s)	224, 321, 671, 700
Cac8I	GCNNGC	2 cut(s)	256, 559
CaiI	CAGNNNCTG	2 cut(s)	673, 780
CfoI	GCGC	4 cut(s)	98, 110, 563, 596
Cfr10I	RCCGGY	2 cut(s)	89, 761
Cfr13I	GGNCC	4 cut(s)	210, 211, 393, 631
CseI	GACGC	3 cut(s)	70, 146, 711
CsiI	ACCWGGT	1 cut(s)	534
Csp6I	GTAC	2 cut(s)	193, 439
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	7 cut(s)	99, 113, 151, 412, 418, 480, 616
CviQI	GTAC	2 cut(s)	193, 439
DdeI	CTNAG	2 cut(s)	215, 242
DinI	GGCGCC	1 cut(s)	595
DpnI	GATC	4 cut(s)	266, 452, 512, 545
DpnII	GATC	4 cut(s)	264, 450, 510, 543
EaeI	YGGCCR	1 cut(s)	732
EciI	GGCGGA	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	150, 389
Eco24I	GRGCYC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	571
Eco57I	CTGAAG	2 cut(s)	84, 757
EcoNI	CCTNNNNNAGG	1 cut(s)	469
EcoO109I	RGGNCCY	3 cut(s)	210, 211, 393
EcoRI	GAATTC	1 cut(s)	72
EcoRII	CCWGG	3 cut(s)	186, 534, 716
EcoRV	GATATC	1 cut(s)	571
EcoT14I	CCWWGG	2 cut(s)	150, 389
EcoT38I	GRGCYC	1 cut(s)	214
EgeI	GGCGCC	1 cut(s)	595
EheI	GGCGCC	1 cut(s)	595
ErhI	CCWWGG	2 cut(s)	150, 389
FaeI	CATG	7 cut(s)	102, 116, 154, 415, 421, 483, 619
FaiI	YATR	9 cut(s)	100, 114, 152, 171, 181, 413, 419, 481, 617
FaqI	GGGAC	3 cut(s)	440, 613, 713
FatI	CATG	7 cut(s)	98, 112, 150, 411, 417, 479, 615
FauI	CCCGC	3 cut(s)	483, 550, 570
FbaI	TGATCA	1 cut(s)	543
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	130, 247, 622
FokI	GGATG	2 cut(s)	387, 622
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	3 cut(s)	130, 247, 622
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	4 cut(s)	97, 109, 562, 595
GluI	GCNGC	3 cut(s)	130, 247, 622
GsaI	CCCAGC	1 cut(s)	450
HaeII	RGCGCY	2 cut(s)	111, 597
HaeIII	GGCC	5 cut(s)	212, 240, 394, 633, 734
HapII	CCGG	9 cut(s)	77, 90, 144, 207, 484, 597, 682, 731, 762
HgaI	GACGC	3 cut(s)	70, 146, 711
HhaI	GCGC	4 cut(s)	98, 110, 563, 596
Hin1I	GRCGYC	3 cut(s)	81, 138, 594
Hin1II	CATG	7 cut(s)	102, 116, 154, 415, 421, 483, 619
Hin6I	GCGC	4 cut(s)	96, 108, 561, 594
HinP1I	GCGC	4 cut(s)	96, 108, 561, 594
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	498, 777
HpaI	GTTAAC	1 cut(s)	202
HpaII	CCGG	9 cut(s)	77, 90, 144, 207, 484, 597, 682, 731, 762
HphI	GGTGA	2 cut(s)	22, 751
Hpy166II	GTNNAC	3 cut(s)	85, 202, 507
Hpy188I	TCNGA	4 cut(s)	136, 543, 776, 782
Hpy188III	TCNNGA	4 cut(s)	144, 300, 427, 508
Hpy8I	GTNNAC	3 cut(s)	85, 202, 507
Hpy99I	CGWCG	3 cut(s)	140, 557, 705
HpyAV	CCTTC	3 cut(s)	130, 583, 688
HpyCH4III	ACNGT	3 cut(s)	228, 470, 675
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	2 cut(s)	27, 381
HpyF10VI	GCNNNNNNNGC	8 cut(s)	246, 255, 369, 378, 591, 612, 621, 630
HpyF3I	CTNAG	2 cut(s)	215, 242
HpySE526I	ACGT	1 cut(s)	552
Hsp92I	GRCGYC	3 cut(s)	81, 138, 594
Hsp92II	CATG	7 cut(s)	102, 116, 154, 415, 421, 483, 619
HspAI	GCGC	4 cut(s)	96, 108, 561, 594
KasI	GGCGCC	1 cut(s)	593
Kpn2I	TCCGGA	1 cut(s)	143
Ksp22I	TGATCA	1 cut(s)	543
KspAI	GTTAAC	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	264, 450, 510, 543
LmnI	GCTCC	2 cut(s)	137, 251
Lsp1109I	GCAGC	1 cut(s)	233
MabI	ACCWGGT	1 cut(s)	534
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	4 cut(s)	524, 669, 685, 695
MalI	GATC	4 cut(s)	266, 452, 512, 545
MboI	GATC	4 cut(s)	264, 450, 510, 543
MhlI	GDGCHC	2 cut(s)	214, 221
MluCI	AATT	3 cut(s)	72, 312, 346
Mly113I	GGCGCC	1 cut(s)	594
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	8 cut(s)	151, 251, 351, 396, 416, 434, 488, 718
MroI	TCCGGA	1 cut(s)	143
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	9 cut(s)	77, 90, 144, 207, 484, 597, 682, 731, 762
MspR9I	CCNGG	8 cut(s)	78, 188, 208, 536, 598, 683, 718, 731
MvaI	CCWGG	3 cut(s)	188, 536, 718
MvnI	CGCG	1 cut(s)	557
MwoI	GCNNNNNNNGC	8 cut(s)	246, 255, 369, 378, 591, 612, 621, 630
NarI	GGCGCC	1 cut(s)	594
NciI	CCSGG	5 cut(s)	78, 208, 598, 683, 731
NcoI	CCATGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	264, 450, 510, 543
NlaIII	CATG	7 cut(s)	102, 116, 154, 415, 421, 483, 619
NmeAIII	GCCGAG	1 cut(s)	460
NmuCI	GTSAC	3 cut(s)	669, 685, 695
PcsI	WCGNNNNNNNCGW	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	498
PflMI	CCANNNNNTGG	1 cut(s)	717
PfoI	TCCNGGA	1 cut(s)	716
PinAI	ACCGGT	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	131, 248, 623
PluTI	GGCGCC	1 cut(s)	597
Psp6I	CCWGG	3 cut(s)	186, 534, 716
PspFI	CCCAGC	1 cut(s)	446
PspGI	CCWGG	3 cut(s)	186, 534, 716
PspOMI	GGGCCC	1 cut(s)	210
PspPI	GGNCC	4 cut(s)	210, 211, 393, 631
PstNI	CAGNNNCTG	2 cut(s)	673, 780
PvuII	CAGCTG	1 cut(s)	246
RsaI	GTAC	2 cut(s)	194, 440
RsaNI	GTAC	2 cut(s)	193, 439
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	3 cut(s)	130, 247, 622
Sau3AI	GATC	4 cut(s)	264, 450, 510, 543
Sau96I	GGNCC	4 cut(s)	210, 211, 393, 631
ScrFI	CCNGG	8 cut(s)	78, 188, 208, 536, 598, 683, 718, 731
SduI	GDGCHC	2 cut(s)	214, 221
SetI	ASST	8 cut(s)	122, 248, 408, 448, 506, 537, 555, 710
SexAI	ACCWGGT	1 cut(s)	534
SfoI	GGCGCC	1 cut(s)	595
SgrAI	CRCCGGYG	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	3 cut(s)	72, 312, 346
SsiI	CCGC	7 cut(s)	129, 249, 372, 490, 557, 577, 622
SspDI	GGCGCC	1 cut(s)	593
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	8 cut(s)	76, 186, 206, 534, 596, 681, 716, 729
StyI	CCWWGG	2 cut(s)	150, 389
TaaI	ACNGT	3 cut(s)	228, 470, 675
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	2 cut(s)	402, 647
TaqII	GACCGA	2 cut(s)	714, 737
TasI	AATT	3 cut(s)	72, 312, 346
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	2 cut(s)	132, 624
TfiI	GAWTC	1 cut(s)	498
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	4 cut(s)	231, 328, 678, 700
TseFI	GTSAC	3 cut(s)	669, 685, 695
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	3 cut(s)	669, 685, 695
TspDTI	ATGAA	1 cut(s)	307
TspGWI	ACGGA	3 cut(s)	210, 512, 643
TspRI	CASTG	4 cut(s)	231, 328, 678, 700
Van91I	CCANNNNNTGG	1 cut(s)	717
XagI	CCTNNNNNAGG	1 cut(s)	469
XapI	RAATTY	1 cut(s)	72
XmaJI	CCTAGG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	84
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.