Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0008994

Physical Location & Seq

Genomic Coordinates Forward (+)

11121213 .. 11121805

Gene Structure 593 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG128600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGCTTCCCTTCATCTTCTCTGCATTGCTTCACTCGCCTCTCTCCTCATCCTGGCTAATGCCAGAATCCCAGGGCCTTACACCGGTGGCCCCTGGCAGGACGCTCACGCCACCTTCTACGGCGGCAGCGACGCCTCTGGAACCATGGGAGGCGCATGTGGGTACGGAAACCTTTACAGCCAGGGCTACGGAGTCAACACTGCTGCACTGAGCACTGCTCTGTTCAACAATGGCCTCAGCTGCGGTGCTTGCTTTGAGATCAGGTGCGGCGACGACCCCAGGTGGTGCACCCCCGGAAAGCCCTCCATCTTCGTCACCGCCACCAACTTCTGCCCTCCCAACTTCGCTCAGCCCAGCGACAATGGCGGTTGGTGCAACCCTCCCAGGACCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACAAAGCCGGAATCGTCCCCGTCTCTTACCGCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

156

Amino Acids

16.49

Weight (kDa)

7.54

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	36 - 126	6.4e-08	EXPB1-like domain 1
DPBB_1	PF03330	67 - 154	7.6e-22	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28950
fragaria_vesca	FvH4_3g36410
malus_domestica	MD00G1013600.v1.1 MD03G1090700.v1.1 MD11G1105700.v1.1
prunus_persica	Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1 Prupe.6G075100_v2.0.a1
pyrus_communis	pycom03g07260 pycom11g08720
rosa_chinensis	RchiOBHm_Chr5g0065301
rosa_laevigata	RLG00000035779
rosa_multiflora	Rmu_co8233643.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015890 Rroxscaffold_6G00414450
rosa_rugosa	Rorug05G0371100
rosa_samantha	Rh3AG128600 Rh5AG428900 Rh5BG444200 Rh5CG466400 Rh5DG456400
rosa_wichuraiana	Rw5G040260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	123, 243, 267, 318, 366, 463
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	164, 434
AfiI	CCNNNNNNNGG	3 cut(s)	52, 83, 97
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	226
AjnI	CCWGG	6 cut(s)	51, 70, 92, 180, 278, 383
AluBI	AGCT	1 cut(s)	240
AluI	AGCT	1 cut(s)	240
Alw21I	GWGCWC	2 cut(s)	215, 290
Alw26I	GTCTC	1 cut(s)	460
Alw44I	GTGCAC	1 cut(s)	286
AoxI	GGCC	3 cut(s)	74, 88, 232
ApaLI	GTGCAC	1 cut(s)	286
ApeKI	GCWGC	3 cut(s)	126, 203, 240
AsiGI	ACCGGT	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	74, 89, 387
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	387
BaeGI	GKGCMC	1 cut(s)	290
Bbv12I	GWGCWC	2 cut(s)	215, 290
BbvCI	CCTCAGC	1 cut(s)	236
BbvI	GCAGC	3 cut(s)	138, 190, 227
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	136
BciT130I	CCWGG	6 cut(s)	53, 72, 94, 182, 280, 385
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	460
BisI	GCNGC	5 cut(s)	124, 127, 204, 241, 268
BlpI	GCTNAGC	1 cut(s)	348
BlsI	GCNGC	5 cut(s)	125, 128, 205, 242, 269
Bme1390I	CCNGG	7 cut(s)	53, 72, 94, 182, 280, 294, 385
Bme18I	GGWCC	1 cut(s)	387
BmgT120I	GGNCC	3 cut(s)	74, 89, 387
BmiI	GGNNCC	3 cut(s)	91, 142, 389
BmrFI	CCNGG	7 cut(s)	53, 72, 94, 182, 280, 294, 385
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
Bpu10I	CCTNAGC	1 cut(s)	236
Bpu1102I	GCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	8 cut(s)	70, 71, 92, 144, 181, 278, 292, 383
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 83, 97
Bse118I	RCCGGY	2 cut(s)	83, 465
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	6 cut(s)	53, 72, 94, 182, 280, 385
BseDI	CCNNGG	8 cut(s)	70, 71, 92, 144, 181, 278, 292, 383
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	3 cut(s)	52, 83, 97
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	3 cut(s)	200, 250, 362
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	290
BseXI	GCAGC	3 cut(s)	138, 190, 227
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	3 cut(s)	76, 90, 234
BshTI	ACCGGT	1 cut(s)	83
BsiHKAI	GWGCWC	2 cut(s)	215, 290
BsiSI	CCGG	4 cut(s)	84, 294, 441, 466
BslFI	GGGAC	1 cut(s)	434
BslI	CCNNNNNNNGG	3 cut(s)	52, 83, 97
BsmAI	GTCTC	1 cut(s)	460
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	434
BsnI	GGCC	3 cut(s)	76, 90, 234
Bsp1286I	GDGCHC	2 cut(s)	215, 290
Bsp143I	GATC	2 cut(s)	258, 423
Bsp1720I	GCTNAGC	1 cut(s)	348
Bsp19I	CCATGG	1 cut(s)	144
BspACI	CCGC	6 cut(s)	123, 243, 267, 318, 366, 463
BspANI	GGCC	3 cut(s)	76, 90, 234
BspCNI	CTCAG	3 cut(s)	201, 249, 361
BspLI	GGNNCC	3 cut(s)	91, 142, 389
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	2 cut(s)	83, 465
BssAI	RCCGGY	2 cut(s)	83, 465
BssECI	CCNNGG	8 cut(s)	70, 71, 92, 144, 181, 278, 292, 383
BssMI	GATC	2 cut(s)	258, 423
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	6 cut(s)	53, 72, 94, 182, 280, 385
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	250
BstDEI	CTNAG	3 cut(s)	209, 236, 348
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	155
BstKTI	GATC	2 cut(s)	261, 426
BstMAI	GTCTC	1 cut(s)	460
BstMBI	GATC	2 cut(s)	258, 423
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 240, 249, 363, 372
BstNI	CCWGG	6 cut(s)	53, 72, 94, 182, 280, 385
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	7 cut(s)	51, 70, 92, 180, 278, 292, 383
BstSLI	GKGCMC	1 cut(s)	290
BstV1I	GCAGC	3 cut(s)	138, 190, 227
BsuRI	GGCC	3 cut(s)	76, 90, 234
BtgI	CCRYGG	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	48
BtsI	GCAGTG	2 cut(s)	198, 213
BtsIMutI	CAGTG	3 cut(s)	198, 206, 213
Cac8I	GCNNGC	1 cut(s)	250
CfoI	GCGC	1 cut(s)	155
Cfr10I	RCCGGY	2 cut(s)	83, 465
Cfr13I	GGNCC	3 cut(s)	74, 89, 387
CseI	GACGC	2 cut(s)	110, 140
Csp6I	GTAC	2 cut(s)	163, 433
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	4 cut(s)	145, 156, 406, 412
CviQI	GTAC	2 cut(s)	163, 433
DdeI	CTNAG	3 cut(s)	209, 236, 348
DpnI	GATC	2 cut(s)	260, 425
DpnII	GATC	2 cut(s)	258, 423
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	387
EcoO109I	RGGNCCY	2 cut(s)	74, 387
EcoRII	CCWGG	6 cut(s)	51, 70, 92, 180, 278, 383
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	4 cut(s)	148, 159, 409, 415
FaiI	YATR	4 cut(s)	146, 157, 407, 413
FaqI	GGGAC	1 cut(s)	434
FatI	CATG	4 cut(s)	144, 155, 405, 411
Fnu4HI	GCNGC	5 cut(s)	124, 127, 204, 241, 268
FokI	GGATG	1 cut(s)	35
Fsp4HI	GCNGC	5 cut(s)	124, 127, 204, 241, 268
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	5 cut(s)	124, 127, 204, 241, 268
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	3 cut(s)	76, 90, 234
HapII	CCGG	4 cut(s)	84, 294, 441, 466
HgaI	GACGC	2 cut(s)	110, 140
HhaI	GCGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	148, 159, 409, 415
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	66, 192, 444
HpaII	CCGG	4 cut(s)	84, 294, 441, 466
HphI	GGTGA	1 cut(s)	307
Hpy166II	GTNNAC	2 cut(s)	196, 288
Hpy188III	TCNNGA	2 cut(s)	138, 421
Hpy8I	GTNNAC	2 cut(s)	196, 288
Hpy99I	CGWCG	2 cut(s)	134, 275
HpyAV	CCTTC	2 cut(s)	20, 124
HpyCH4V	TGCA	4 cut(s)	24, 206, 288, 375
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 240, 249, 363, 372
HpyF3I	CTNAG	3 cut(s)	209, 236, 348
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	148, 159, 409, 415
HspAI	GCGC	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	258, 423
Lsp1109I	GCAGC	3 cut(s)	138, 190, 227
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	2 cut(s)	260, 425
MboI	GATC	2 cut(s)	258, 423
MboII	GAAGA	2 cut(s)	8, 301
MhlI	GDGCHC	2 cut(s)	215, 290
MlyI	GAGTC	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	4 cut(s)	84, 294, 441, 466
MspR9I	CCNGG	7 cut(s)	53, 72, 94, 182, 280, 294, 385
MvaI	CCWGG	6 cut(s)	53, 72, 94, 182, 280, 385
MwoI	GCNNNNNNNGC	5 cut(s)	35, 240, 249, 363, 372
NciI	CCSGG	1 cut(s)	294
NcoI	CCATGG	1 cut(s)	144
NdeII	GATC	2 cut(s)	258, 423
NlaIII	CATG	4 cut(s)	148, 159, 409, 415
NlaIV	GGNNCC	3 cut(s)	91, 142, 389
NmeAIII	GCCGAG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	159
PasI	CCCWGGG	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	66, 444
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	5 cut(s)	125, 128, 205, 242, 269
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	387
Psp6I	CCWGG	6 cut(s)	51, 70, 92, 180, 278, 383
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	6 cut(s)	51, 70, 92, 180, 278, 383
PspN4I	GGNNCC	3 cut(s)	91, 142, 389
PspPI	GGNCC	3 cut(s)	74, 89, 387
PspPPI	RGGWCCY	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	240
RsaI	GTAC	2 cut(s)	164, 434
RsaNI	GTAC	2 cut(s)	163, 433
RseI	CAYNNNNRTG	1 cut(s)	410
SatI	GCNGC	5 cut(s)	124, 127, 204, 241, 268
Sau3AI	GATC	2 cut(s)	258, 423
Sau96I	GGNCC	3 cut(s)	74, 89, 387
SchI	GAGTC	1 cut(s)	201
ScrFI	CCNGG	7 cut(s)	53, 72, 94, 182, 280, 294, 385
SduI	GDGCHC	2 cut(s)	215, 290
SetI	ASST	6 cut(s)	116, 174, 242, 266, 284, 402
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	387
SmiMI	CAYNNNNRTG	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
SsiI	CCGC	6 cut(s)	123, 243, 267, 318, 366, 463
StyD4I	CCNGG	7 cut(s)	51, 70, 92, 180, 278, 292, 383
StyI	CCWWGG	1 cut(s)	144
TaqI	TCGA	1 cut(s)	396
TatI	WGTACW	1 cut(s)	432
TauI	GCSGC	2 cut(s)	126, 270
TfiI	GAWTC	2 cut(s)	66, 444
TscAI	CASTG	3 cut(s)	205, 213, 220
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	3 cut(s)	126, 203, 240
Tsp45I	GTSAC	1 cut(s)	313
TspGWI	ACGGA	2 cut(s)	180, 204
TspRI	CASTG	3 cut(s)	205, 213, 220
VneI	GTGCAC	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	387
XceI	RCATGY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.