Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011356

Physical Location & Seq

Genomic Coordinates Reverse (-)

17672552 .. 17676738

Gene Structure 4187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1086800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3156 bp

ATGCGCTCAGGAGGTTGTGCAGCTCAGCAGACCCTCACAGCGGAGGCTGCTTCGGTGTTGAAGCACTCTCTCAGCCTAGCAAGGCGGAGAGGCCATGCTCAGGTCACTCCTCTCCACGTGGCCGCCACTCTTCTCAGCTCAAGAACTAGCCTCTTGCGGCGGGCCTGTCTCAAATCTCAGCCGCACCAAACCTCTCATCCTCTCCAATGTCGAGCTCTCGAGCTCTGCTTCAATGTGGCTCTCAACCGCCTCCCAACAACTCCCGGCCCTCTCCTCCACGGGCAGCCCTCTCTCTCCAACGCCCTCATCGCCGCCCTCAAGAGAGCCCAAGCCCATCAGAGAAGAGGCTGCATCGAGCAGCAGCAGCAGCAGCCGCTCTTAACCATCAAAGTCGAGCTCGAGCAGCTCATCATCTCCATCCTTGACGACCCAAGTGTCAGCAGAGTCATGAGAGAGGCAGGTTTCTCCAGCACCAACGTCAAGAACAACTTGGAGGACTCCTCAACGTCCTCCGTTTTCCAGTGTTACAGCAGCTCCGGCGGCGTTTTCTCCTCTCCTTGCTCTCCTTCTCCTCCCTCAGACCGCTACCACCAAAACAATATCATTCCTGGGAGTTTCTGGCAACCCCATTTCCTGGCTTACACTTGTGAGCAAAACCCACTTCTTTTTTCCCCTCAAAAGACAAAACCTCCATTGATAATCAGCAACCCCACCACCACCACTGAATACTCTGGTAGTTCTCCAAAGGAAGAAGATGTTAAGTTGGTGTTGGAGGTGCTGATGAGGAAGAAAAGGAGGAACACTGTGATAGTTGGTGATTCAGCTTCCATGACTGAAGGGCTTGTCTCTGAAGTTATGGGGAGGATAGAGAGAGGAGGAGTTGGAGTTCCTGAGGAGCTGAAATCAACCCAGTTCATCAAGTTTCAGTTCTCACCAGTGTCCGTGAGGTTCATGAAAAAGGAATATGTGGAAGCAAATCTCTTAGAGCTCAGAAGAAAAGTGGACTCATCATTTGTTGGAGGAGGAGGTGCTGTTATTTATACCGGAGATCTGAAGTGGGCTGTTACTGATGAGCAGAGAGATCAAAACCAAAACTCTGGTGGGTATTATAGCCCAGTTGAGCATTTGGTTTCAGAGATTGCAAGGTTGGTCTCTTCAGATAACTCAAGGGGGAGGGTGTGGGTGATGGGAACTGCAAGTTACCAGACATACATGAGGTGCCAAATGAGGCAGCCACCTCTTGAAATCCAATGGTGTCTTCAAGCTGTTTCTGTTCCTTCTGGTGGTCTTGGTCTCTCCCTTCATGCTTCCAGCGTCCAAGACTCAAGAATAATCTTGTCTCAGAAACCATGTGAAGTTCTGGAAACAAAACCAGTATTCAATAGCAAGGATGAGCAACATTATTATAATAATAACAAGCTCACTTGCTGTCAAGAATGCACTTCAGATTATGAAAAAGAATCTCAGCTCTTGAAATCTGGCCAGCAGAAATTGCCTGCCTGGCTGCAACCACATGGAACCGAAGCACGTCAAAAGGATGAAGTAACTGAATTGAGGAGAAAGTGGAACAGGTTATGCTACAGTCTGCACCAAGGAAGGCATGCAGCTCAGAACAATTTGAGCTCTTCTAATTTGTACAACAATCAAGGCTTAATTGGAAACAACTCCTCTTATGTTTCAACATACTCTTGGTGGTCTACCAAGAATGGCATCTCTCCCGATCCGGATTCAATCTCCTTCTATCATGATCCACCTTCGGAGCCTGCTCACGGCTCTAGTCCCATGCCTCAGTTTAGGAGACAACAATCGTGCACGATCGAGTTCAACTTTGACAATGGGATCCAAAAGAATCAAGTGGTGGAACCGAGTTTGGATTCTCTGAAAAGCACTGAAGGCAAGGAAGTGAAGATCACTCTTGCTCTTGGCAACTCTGTGTTTTCAGGTTCGGAGAAAATGGTGGAGAGAAAATGCACTGAAAGAACAATAGCTGAAATGTGCAAGCTACTGAAAGAGAATGTTCCTTGGCAATCCGAATCCATTCCTTCGATAGTAGATGCAATTATCGACTCTAAAACTGCGAGGCAGGAAACTTGGTTGCTGATTCAGGGGAATGATTCGACTGGAAAAAGAAGGCTGGCACATGCAATTGCTGAATTGGTTATGGGGTCTGCTGATTCACTCCTCCATATCGACATGAACAAAAGAGAAAATGAGATGAACCCAAGAACAGAAGTTGTAGCAAGAGCCTTGAAATCCAATGAGAAACTTGTTGTCTTGGTAGAAGATATTGATTTGGCTGATACCCAGTTCTTGAAATTTTTAGCTGATGGTTTTGAAAACCGAAATTTCGGTGAAGTGAGTAGAAGAGAAAGGATTAAAAGCCAAGCCATATTCATCTTGACTAAGAGTGAGTCAACAGTATATGAAGATCAGGCCAAGTACCTGGATACCGTAATCCAAATGACATTGAAGACATTGAAGGTTGATGAGAAAAGTAGTACTAGTCCAAATTTTCAGGGAGTTAACTTCGTTCACAAGCGAAGGGCTGAGTGGGAGCTAGAAATCAAGACCAAGAGTCCCAGAACTGAAGAGAAGGAAGATCCAAGTGTGGTTGCTGTTGAGAATGTGAATAACAAGAAGGTCTTCTCAAGGCAATCAAGCTTCAACACCCTTGATCTCAACCTCAAAGCCGGGGAGGATGATGAAAACGAAGACAAGGCAGGGGAGTTTAGCCCCATTTCAAGTGACTTGACTCGCGAAACCAACACCGATCTCCAAACCCCACATGGGTTTCTCGAATCGATAGAGAACCTCTTTGTTTTCAATCGAAGCCCGGCCAGAGATCGAGAGGCAACCGAGCTTTTCTTGTCCAAGATGGAAAGGTGTTTCGGGGAGGTATACGGGAAACAAAATGTGGTTAGTTTTAGTGTGGATAAGAGGGTGTTAGAGGGGGTTTGTATTGGGTCTGGATATTTTCCCAATAGCTTGTTTGAGAAATGGCTGAAAGACATTTTTCAGACAAGCTTGAGGGCGGTTAAACTTAAACTTAGCGGGAAAGAGGGTATACTTGTAAGGCTCTGTTTGGGTGACAAAGAAGATGGCATTTTGGAGGGTTTCTTGGGTTCTTGTCTTCCTAAGAAAATCCATATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009536 GO:0010232 GO:0010233 GO:0032501 GO:0033500 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0051179 GO:0051234 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

1052

Amino Acids

117.65

Weight (kDa)

7.92

Isoelectric Point (pI)

51.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clp_N	PF02861	12 - 114	2.9e-07	Clp repeat (R) N-terminal domain
NBD_SMAX1	PF23569	249 - 438	1e-82	SMAX1 nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29920 AT4G29920
fragaria_vesca	FvH4_4g07050 FvH4_4g07050
malus_domestica	MD00G1086800.v1.1 MD16G1247100.v1.1
prunus_persica	Prupe.1G073700_v2.0.a1
pyrus_communis	pycom13g21290 pycom16g20740
rosa_chinensis	RchiOBHm_Chr4g0399171
rosa_laevigata	RLG00000009293
rosa_multiflora	Rmu_sc0002062.1_g000001 Rmu_sc0006088.1_g000002
rosa_roxburghii	Rroxscaffold_5G00344130
rosa_rugosa	Rorug04G0014600
rosa_samantha	Rh4AG092500 Rh4BG090500 Rh4CG101000 Rh4DG084900
rosa_wichuraiana	Rw4G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1407
AasI	GACNNNNNNGTC	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	449
AccB1I	GGYRCC	1 cut(s)	1218
AccB7I	CCANNNNNTGG	1 cut(s)	634
AccBSI	CCGCTC	1 cut(s)	376
AccI	GTMKAC	3 cut(s)	1697, 2898, 3064
AccII	CGCG	1 cut(s)	2757
AccIII	TCCGGA	1 cut(s)	1723
AclWI	GGATC	5 cut(s)	1715, 1742, 1834, 1847, 2594
AcoI	YGGCCR	3 cut(s)	120, 1480, 2835
AcsI	RAATTY	3 cut(s)	2315, 2344, 2509
AcuI	CTGAAG	7 cut(s)	855, 870, 1073, 1140, 1428, 1911, 2607
AcvI	CACGTG	1 cut(s)	118
AfaI	GTAC	3 cut(s)	1637, 2441, 2500
AfiI	CCNNNNNNNGG	6 cut(s)	40, 100, 634, 1283, 1769, 2787
AhdI	GACNNNNNGTC	1 cut(s)	2574
AhlI	ACTAGT	1 cut(s)	2501
AjiI	CACGTC	1 cut(s)	1529
AjnI	CCWGG	4 cut(s)	607, 633, 1499, 2442
AjuI	GAANNNNNNNTTGG	2 cut(s)	1242, 1274
AloI	GAACNNNNNNTCC	2 cut(s)	870, 902
Alw21I	GWGCWC	6 cut(s)	217, 225, 399, 990, 1625, 1814
Alw26I	GTCTC	6 cut(s)	173, 850, 1156, 1298, 1344, 1792
Alw44I	GTGCAC	1 cut(s)	1810
AlwI	GGATC	5 cut(s)	1715, 1742, 1834, 1847, 2594
Ama87I	CYCGRG	2 cut(s)	218, 398
Aor13HI	TCCGGA	1 cut(s)	1723
AoxI	GGCC	7 cut(s)	91, 120, 162, 265, 1480, 2433, 2835
ApaLI	GTGCAC	1 cut(s)	1810
ApoI	RAATTY	3 cut(s)	2315, 2344, 2509
ArsI	GACNNNNNNTTYG	2 cut(s)	995, 1027
Asp700I	GAANNNNTTC	2 cut(s)	2037, 2642
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	162, 266
AsuC2I	CCSGG	3 cut(s)	264, 2692, 2834
AsuHPI	GGTGA	5 cut(s)	827, 924, 1195, 2363, 3098
AvaI	CYCGRG	2 cut(s)	218, 398
AxyI	CCTNAGG	1 cut(s)	891
BaeGI	GKGCMC	1 cut(s)	1814
BalI	TGGCCA	1 cut(s)	1482
BamHI	GGATCC	1 cut(s)	1839
BanI	GGYRCC	1 cut(s)	1218
BanII	GRGCYC	6 cut(s)	217, 225, 328, 399, 990, 1625
BbrPI	CACGTG	1 cut(s)	118
BbsI	GAAGAC	5 cut(s)	1250, 2477, 2635, 2718, 3122
Bbv12I	GWGCWC	6 cut(s)	217, 225, 399, 990, 1625, 1814
BccI	CCATC	7 cut(s)	342, 392, 425, 1180, 2321, 2869, 3092
BceAI	ACGGC	1 cut(s)	1786
BciT130I	CCWGG	4 cut(s)	609, 635, 1501, 2444
BciVI	GTATCC	1 cut(s)	2440
BcnI	CCSGG	3 cut(s)	264, 2692, 2834
BcoDI	GTCTC	6 cut(s)	173, 850, 1156, 1298, 1344, 1792
BcuI	ACTAGT	1 cut(s)	2501
BfaI	CTAG	5 cut(s)	77, 147, 1776, 2502, 2558
BfmI	CTRYAG	1 cut(s)	1579
BfuAI	ACCTGC	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	2440
BglI	GCCNNNNNGGC	1 cut(s)	1501
BglII	AGATCT	1 cut(s)	1048
BlpI	GCTNAGC	1 cut(s)	24
BmcAI	AGTACT	1 cut(s)	2500
Bme1390I	CCNGG	7 cut(s)	264, 609, 635, 1501, 2444, 2692, 2834
BmeRI	GACNNNNNGTC	1 cut(s)	2574
BmeT110I	CYCGRG	2 cut(s)	218, 398
BmgBI	CACGTC	1 cut(s)	1529
BmgT120I	GGNCC	2 cut(s)	162, 266
BmiI	GGNNCC	5 cut(s)	1220, 1519, 1761, 1841, 1863
BmrFI	CCNGG	7 cut(s)	264, 609, 635, 1501, 2444, 2692, 2834
BmrI	ACTGGG	3 cut(s)	904, 1109, 2299
BmsI	GCATC	3 cut(s)	360, 1719, 2044
BmuI	ACTGGG	3 cut(s)	904, 1109, 2299
BpiI	GAAGAC	5 cut(s)	1250, 2477, 2635, 2718, 3122
BplI	GAGNNNNNCTC	2 cut(s)	485, 517
BpmI	CTGGAG	1 cut(s)	451
Bpu10I	CCTNAGC	2 cut(s)	7, 99
Bpu1102I	GCTNAGC	1 cut(s)	24
BpuEI	CTTGAG	6 cut(s)	124, 302, 1150, 1309, 2632, 3046
BpuMI	CCSGG	3 cut(s)	264, 2692, 2834
Bsa29I	ATCGAT	1 cut(s)	2801
BsaAI	YACGTR	1 cut(s)	118
BsaI	GGTCTC	2 cut(s)	1156, 1298
BsaJI	CCNNGG	5 cut(s)	277, 608, 1591, 2021, 2691
BsaWI	WCCGGW	2 cut(s)	1043, 1723
BsaXI	ACNNNNNCTCC	8 cut(s)	518, 548, 673, 703, 870, 900, 1017, 1047
Bsc4I	CCNNNNNNNGG	6 cut(s)	40, 100, 634, 1283, 1769, 2787
Bse1I	ACTGG	7 cut(s)	520, 910, 935, 1115, 1373, 2125, 2305
Bse21I	CCTNAGG	1 cut(s)	891
BseAI	TCCGGA	1 cut(s)	1723
BseBI	CCWGG	4 cut(s)	609, 635, 1501, 2444
BseCI	ATCGAT	1 cut(s)	2801
BseDI	CCNNGG	5 cut(s)	277, 608, 1591, 2021, 2691
BseGI	GGATG	5 cut(s)	196, 417, 1396, 1543, 2704
BseLI	CCNNNNNNNGG	6 cut(s)	40, 100, 634, 1283, 1769, 2787
BseNI	ACTGG	7 cut(s)	520, 910, 935, 1115, 1373, 2125, 2305
BseSI	GKGCMC	1 cut(s)	1814
BsgI	GTGCAG	2 cut(s)	39, 1571
Bsh1236I	CGCG	1 cut(s)	2757
Bsh1285I	CGRYCG	1 cut(s)	1818
BshFI	GGCC	7 cut(s)	93, 122, 164, 267, 1482, 2435, 2837
BshNI	GGYRCC	1 cut(s)	1218
BshVI	ATCGAT	1 cut(s)	2801
BsiEI	CGRYCG	1 cut(s)	1818
BsiHKAI	GWGCWC	6 cut(s)	217, 225, 399, 990, 1625, 1814
BsiHKCI	CYCGRG	2 cut(s)	218, 398
BsiSI	CCGG	6 cut(s)	264, 537, 1044, 1724, 2691, 2834
BslFI	GGGAC	2 cut(s)	1764, 2562
BslI	CCNNNNNNNGG	6 cut(s)	40, 100, 634, 1283, 1769, 2787
BsmAI	GTCTC	6 cut(s)	173, 850, 1156, 1298, 1344, 1792
BsmFI	GGGAC	2 cut(s)	1764, 2562
BsmI	GAATGC	1 cut(s)	1442
BsnI	GGCC	7 cut(s)	93, 122, 164, 267, 1482, 2435, 2837
Bso31I	GGTCTC	2 cut(s)	1156, 1298
BsoBI	CYCGRG	2 cut(s)	218, 398
Bsp1286I	GDGCHC	7 cut(s)	217, 225, 328, 399, 990, 1625, 1814
Bsp13I	TCCGGA	1 cut(s)	1723
Bsp1407I	TGTACA	1 cut(s)	1635
Bsp1720I	GCTNAGC	1 cut(s)	24
Bsp68I	TCGCGA	1 cut(s)	2757
BspANI	GGCC	7 cut(s)	93, 122, 164, 267, 1482, 2435, 2837
BspDI	ATCGAT	1 cut(s)	2801
BspEI	TCCGGA	1 cut(s)	1723
BspFNI	CGCG	1 cut(s)	2757
BspHI	TCATGA	3 cut(s)	447, 951, 1744
BspLI	GGNNCC	5 cut(s)	1220, 1519, 1761, 1841, 1863
BspMI	ACCTGC	1 cut(s)	449
BspPI	GGATC	5 cut(s)	1715, 1742, 1834, 1847, 2594
BspQI	GCTCTTC	1 cut(s)	1630
BspT107I	GGYRCC	1 cut(s)	1218
BspTNI	GGTCTC	2 cut(s)	1156, 1298
BsrBI	CCGCTC	1 cut(s)	376
BsrGI	TGTACA	1 cut(s)	1635
BsrI	ACTGG	7 cut(s)	520, 910, 935, 1115, 1373, 2125, 2305
BssECI	CCNNGG	5 cut(s)	277, 608, 1591, 2021, 2691
BssNAI	GTATAC	2 cut(s)	2899, 3065
BssT1I	CCWWGG	2 cut(s)	1591, 2021
Bst1107I	GTATAC	2 cut(s)	2899, 3065
Bst2UI	CCWGG	4 cut(s)	609, 635, 1501, 2444
Bst4CI	ACNGT	4 cut(s)	805, 1583, 2419, 2452
Bst6I	CTCTTC	6 cut(s)	135, 337, 1159, 1630, 2359, 2583
BstAPI	GCANNNNNTGC	1 cut(s)	1492
BstAUI	TGTACA	1 cut(s)	1635
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	7 cut(s)	162, 1484, 1497, 1602, 1764, 2000, 2136
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	5 cut(s)	196, 417, 1396, 1543, 2704
BstFNI	CGCG	1 cut(s)	2757
BstHHI	GCGC	1 cut(s)	6
BstMAI	GTCTC	6 cut(s)	173, 850, 1156, 1298, 1344, 1792
BstMCI	CGRYCG	1 cut(s)	1818
BstNI	CCWGG	4 cut(s)	609, 635, 1501, 2444
BstNSI	RCATGY	2 cut(s)	1604, 2144
BstSCI	CCNGG	7 cut(s)	262, 607, 633, 1499, 2442, 2690, 2832
BstSFI	CTRYAG	1 cut(s)	1579
BstSLI	GKGCMC	1 cut(s)	1814
BstUI	CGCG	1 cut(s)	2757
BstV2I	GAAGAC	5 cut(s)	1250, 2477, 2635, 2718, 3122
BstX2I	RGATCY	3 cut(s)	1048, 1839, 2599
BstXI	CCANNNNNNTGG	2 cut(s)	1097, 2443
BstYI	RGATCY	3 cut(s)	1048, 1839, 2599
BstZ17I	GTATAC	2 cut(s)	2899, 3065
Bsu15I	ATCGAT	1 cut(s)	2801
Bsu36I	CCTNAGG	1 cut(s)	891
BsuI	GTATCC	1 cut(s)	2440
BsuRI	GGCC	7 cut(s)	93, 122, 164, 267, 1482, 2435, 2837
BsuTUI	ATCGAT	1 cut(s)	2801
BtgI	CCRYGG	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	292
BtrI	CACGTC	1 cut(s)	1529
BtsCI	GGATG	5 cut(s)	196, 417, 1396, 1543, 2704
BtsIMutI	CAGTG	6 cut(s)	527, 720, 801, 942, 1887, 1971
BtuMI	TCGCGA	1 cut(s)	2757
BveI	ACCTGC	1 cut(s)	449
Cac8I	GCNNGC	7 cut(s)	162, 1484, 1497, 1602, 1764, 2000, 2136
CciI	TCATGA	3 cut(s)	447, 951, 1744
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	162, 266
ClaI	ATCGAT	1 cut(s)	2801
CseI	GACGC	1 cut(s)	1303
Csp6I	GTAC	3 cut(s)	1636, 2440, 2499
CviQI	GTAC	3 cut(s)	1636, 2440, 2499
DrdI	GACNNNNNNGTC	1 cut(s)	434
DriI	GACNNNNNGTC	1 cut(s)	2574
DseDI	GACNNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	3 cut(s)	120, 1480, 2835
Eam1104I	CTCTTC	6 cut(s)	135, 337, 1159, 1630, 2359, 2583
Eam1105I	GACNNNNNGTC	1 cut(s)	2574
EarI	CTCTTC	6 cut(s)	135, 337, 1159, 1630, 2359, 2583
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	5 cut(s)	215, 223, 397, 988, 1623
Eco130I	CCWWGG	2 cut(s)	1591, 2021
Eco24I	GRGCYC	6 cut(s)	217, 225, 328, 399, 990, 1625
Eco31I	GGTCTC	2 cut(s)	1156, 1298
Eco53kI	GAGCTC	5 cut(s)	215, 223, 397, 988, 1623
Eco57I	CTGAAG	7 cut(s)	855, 870, 1073, 1140, 1428, 1911, 2607
Eco72I	CACGTG	1 cut(s)	118
Eco81I	CCTNAGG	1 cut(s)	891
Eco88I	CYCGRG	2 cut(s)	218, 398
EcoICRI	GAGCTC	5 cut(s)	215, 223, 397, 988, 1623
EcoRII	CCWGG	4 cut(s)	607, 633, 1499, 2442
EcoT14I	CCWWGG	2 cut(s)	1591, 2021
EcoT38I	GRGCYC	6 cut(s)	217, 225, 328, 399, 990, 1625
ErhI	CCWWGG	2 cut(s)	1591, 2021
FalI	AAGNNNNNCTT	4 cut(s)	473, 505, 2627, 2659
FaqI	GGGAC	2 cut(s)	1764, 2562
FauI	CCCGC	2 cut(s)	153, 3044
FblI	GTMKAC	3 cut(s)	1697, 2898, 3064
FokI	GGATG	5 cut(s)	183, 404, 1403, 1550, 2711
FriOI	GRGCYC	6 cut(s)	217, 225, 328, 399, 990, 1625
FspBI	CTAG	5 cut(s)	77, 147, 1776, 2502, 2558
GlaI	GCGC	1 cut(s)	5
GsuI	CTGGAG	1 cut(s)	451
HaeIII	GGCC	7 cut(s)	93, 122, 164, 267, 1482, 2435, 2837
HapII	CCGG	6 cut(s)	264, 537, 1044, 1724, 2691, 2834
HgaI	GACGC	1 cut(s)	1303
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	2 cut(s)	2415, 2524
HindII	GTYRAC	2 cut(s)	2415, 2524
HindIII	AAGCTT	2 cut(s)	2659, 3022
HpaI	GTTAAC	1 cut(s)	2524
HpaII	CCGG	6 cut(s)	264, 537, 1044, 1724, 2691, 2834
HphI	GGTGA	5 cut(s)	827, 924, 1195, 2363, 3098
Hpy166II	GTNNAC	8 cut(s)	1003, 1698, 1812, 2415, 2524, 2533, 2899, 3065
Hpy8I	GTNNAC	8 cut(s)	1003, 1698, 1812, 2415, 2524, 2533, 2899, 3065
HpyCH4III	ACNGT	4 cut(s)	805, 1583, 2419, 2452
HpyCH4IV	ACGT	4 cut(s)	117, 477, 506, 1528
HpySE526I	ACGT	4 cut(s)	117, 477, 506, 1528
HspAI	GCGC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	1723
KspAI	GTTAAC	1 cut(s)	2524
LguI	GCTCTTC	1 cut(s)	1630
LmnI	GCTCC	4 cut(s)	539, 895, 1759, 2554
LweI	GCATC	3 cut(s)	360, 1719, 2044
MaeI	CTAG	5 cut(s)	77, 147, 1776, 2502, 2558
MaeII	ACGT	4 cut(s)	117, 477, 506, 1528
MaeIII	GTNAC	7 cut(s)	103, 524, 1063, 1199, 1543, 2744, 3086
MbiI	CCGCTC	1 cut(s)	376
MfeI	CAATTG	1 cut(s)	2145
MflI	RGATCY	3 cut(s)	1048, 1839, 2599
MhlI	GDGCHC	7 cut(s)	217, 225, 328, 399, 990, 1625, 1814
MlsI	TGGCCA	1 cut(s)	1482
MluNI	TGGCCA	1 cut(s)	1482
MlyI	GAGTC	8 cut(s)	453, 491, 998, 1316, 2060, 2420, 2584, 2746
MmeI	TCCRAC	4 cut(s)	321, 750, 862, 997
Mox20I	TGGCCA	1 cut(s)	1482
MroI	TCCGGA	1 cut(s)	1723
MroXI	GAANNNNTTC	2 cut(s)	2037, 2642
MscI	TGGCCA	1 cut(s)	1482
MseI	TTAA	7 cut(s)	380, 759, 1652, 2376, 2523, 3036, 3042
Msp20I	TGGCCA	1 cut(s)	1482
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	6 cut(s)	264, 537, 1044, 1724, 2691, 2834
MspR9I	CCNGG	7 cut(s)	264, 609, 635, 1501, 2444, 2692, 2834
MunI	CAATTG	1 cut(s)	2145
Mva1269I	GAATGC	1 cut(s)	1442
MvaI	CCWGG	4 cut(s)	609, 635, 1501, 2444
MvnI	CGCG	1 cut(s)	2757
NciI	CCSGG	3 cut(s)	264, 2692, 2834
NlaIV	GGNNCC	5 cut(s)	1220, 1519, 1761, 1841, 1863
NmuCI	GTSAC	3 cut(s)	103, 2744, 3086
NruI	TCGCGA	1 cut(s)	2757
NspI	RCATGY	2 cut(s)	1604, 2144
PaeI	GCATGC	1 cut(s)	1604
PaeR7I	CTCGAG	2 cut(s)	218, 398
PagI	TCATGA	3 cut(s)	447, 951, 1744
PciSI	GCTCTTC	1 cut(s)	1630
PctI	GAATGC	1 cut(s)	1442
PdmI	GAANNNNTTC	2 cut(s)	2037, 2642
PflMI	CCANNNNNTGG	1 cut(s)	634
Ple19I	CGATCG	1 cut(s)	1818
PleI	GAGTC	8 cut(s)	452, 491, 998, 1316, 2060, 2419, 2583, 2746
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
PpsI	GAGTC	8 cut(s)	452, 491, 998, 1316, 2060, 2419, 2583, 2746
Ppu21I	YACGTR	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	1407
Psp124BI	GAGCTC	5 cut(s)	217, 225, 399, 990, 1625
Psp6I	CCWGG	4 cut(s)	607, 633, 1499, 2442
PspCI	CACGTG	1 cut(s)	118
PspGI	CCWGG	4 cut(s)	607, 633, 1499, 2442
PspN4I	GGNNCC	5 cut(s)	1220, 1519, 1761, 1841, 1863
PspPI	GGNCC	2 cut(s)	162, 266
PspXI	VCTCGAGB	1 cut(s)	398
PsuI	RGATCY	3 cut(s)	1048, 1839, 2599
PvuI	CGATCG	1 cut(s)	1818
RruI	TCGCGA	1 cut(s)	2757
RsaI	GTAC	3 cut(s)	1637, 2441, 2500
RsaNI	GTAC	3 cut(s)	1636, 2440, 2499
SacI	GAGCTC	5 cut(s)	217, 225, 399, 990, 1625
SapI	GCTCTTC	1 cut(s)	1630
SaqAI	TTAA	7 cut(s)	380, 759, 1652, 2376, 2523, 3036, 3042
Sau96I	GGNCC	2 cut(s)	162, 266
ScaI	AGTACT	1 cut(s)	2500
SchI	GAGTC	8 cut(s)	453, 491, 998, 1316, 2060, 2420, 2584, 2746
ScrFI	CCNGG	7 cut(s)	264, 609, 635, 1501, 2444, 2692, 2834
SduI	GDGCHC	7 cut(s)	217, 225, 328, 399, 990, 1625, 1814
SfaNI	GCATC	3 cut(s)	360, 1719, 2044
SfcI	CTRYAG	1 cut(s)	1579
Sfr274I	CTCGAG	2 cut(s)	218, 398
SlaI	CTCGAG	2 cut(s)	218, 398
SmlI	CTYRAG	8 cut(s)	139, 218, 317, 398, 1165, 1324, 2647, 3025
SmoI	CTYRAG	8 cut(s)	139, 218, 317, 398, 1165, 1324, 2647, 3025
SpeI	ACTAGT	1 cut(s)	2501
SphI	GCATGC	1 cut(s)	1604
SspMI	CTAG	5 cut(s)	77, 147, 1776, 2502, 2558
SstI	GAGCTC	5 cut(s)	217, 225, 399, 990, 1625
StyD4I	CCNGG	7 cut(s)	262, 607, 633, 1499, 2442, 2690, 2832
StyI	CCWWGG	2 cut(s)	1591, 2021
TaaI	ACNGT	4 cut(s)	805, 1583, 2419, 2452
TaiI	ACGT	4 cut(s)	120, 480, 509, 1531
TatI	WGTACW	2 cut(s)	1635, 2498
TauI	GCSGC	6 cut(s)	125, 160, 184, 314, 376, 543
Tru1I	TTAA	7 cut(s)	380, 759, 1652, 2376, 2523, 3036, 3042
Tru9I	TTAA	7 cut(s)	380, 759, 1652, 2376, 2523, 3036, 3042
TscAI	CASTG	6 cut(s)	527, 727, 808, 942, 1894, 1978
TseFI	GTSAC	3 cut(s)	103, 2744, 3086
Tsp45I	GTSAC	3 cut(s)	103, 2744, 3086
TspGWI	ACGGA	2 cut(s)	502, 931
TspRI	CASTG	6 cut(s)	527, 727, 808, 942, 1894, 1978
Van91I	CCANNNNNTGG	1 cut(s)	634
VneI	GTGCAC	1 cut(s)	1810
XapI	RAATTY	3 cut(s)	2315, 2344, 2509
XceI	RCATGY	2 cut(s)	1604, 2144
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1097, 2783
XhoI	CTCGAG	2 cut(s)	218, 398
XmiI	GTMKAC	3 cut(s)	1697, 2898, 3064
XmnI	GAANNNNTTC	2 cut(s)	2037, 2642
XspI	CTAG	5 cut(s)	77, 147, 1776, 2502, 2558
ZrmI	AGTACT	1 cut(s)	2500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.