Rmu_sc0002062.1_g000001

vascular transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002062.1
OG0011356
Physical Location & Seq
Forward (+)
14395 .. 16357
1963 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002062.1_g000001.1.cds

Sequence Viewer

Length: 1737 bp
ctggaaacaaagccattcagtagcatcaaggatcatgaacaagatcatggaaagctcccctgctgtgaagaatgcacttcaaattatgagaaagaagctcagttgctcaaatctggccagcagaaattgcctgcctggcttcaaccacatggcacccaagcctgtcaaaaggatgaagtggttgaattgaggagaaagtggaacaggttatgctacagtctgcaccaaggaaggcataatccgaatcattcaagccccgctttgtacaaccatcaaaactcaattgggaagaaccactcttatagtacttcatcgtacccttggttgtcaaccaggaatggcatcttcccagatctgaattcgatctcttttgctgatcatccagcttcagaccctgcaacccatggctctaatctggtgcctcggttcaggagacaacaatcatgtagtacaatcgaattcaatttcgataatggggttcaaaagcatgaggtagtggaaccaaccttggattctttgaaactcagtgaagataaggaagtgaagatcacacttgctctcggcaactctgtgttatctgattcaggaaaatcgacggtgcagagagctgacatgtgtaagcttttgaaagagaatgtgccttggcaatctgaatccattccctcaatagtagaagccataatcggctccaaaccatgttcggaaacttggtttctgattgatgggaatgactcgattggaaagagaaggttggctcaagcaatagcagagttggttctgggatctgttaattcactcttacatatcaacatgaacaaaagagaagatgagatgcacccaagagtggaaaaactaaaaaaagccttgaaatccagtgacaaacttgttgtgttggtagaagatgttgatttggctgatacccagttcttaaaattcctagctgatcgaaaatgtggagaagtgagtagaagagatgggaatcaaggccaagcaatattcattttgaccaagggtgagtccacaagaaatgagtacccaggttctataatccaaatgaagttgaaagttgatgaaaaaagtactagtcctagttttgggattgccagcttcgaacacaagcggaaagctgagtgggagcttgaaaacaagaccaaatctacaagatttgaagaaaaggaggattcaagtgtggttgttgcctttgagaatgtgaatagcaagaaggacttctcaaggcaatcaagcttcaacagtaaccttgatctaaacctcaaagccggtgaggacaatgaaatcgaagacaatgcaggggaggttagccctgtttcaagtgatttgacccgcgactctgccacggatgtccaaaccccacttgggttcctcgaatcagtcgagaacctcttcgttttcaatcgaagcccagctagagatcgggaggccaccgagcttttcttgtccaagattgaggggtgctttgagggtgtatatgggaaacaaaatggggttagttttagtgtggataagagggtgttagaagagatatctgttgggtctggttcttttcccaatagcttgtttgagaaatggctaagaggtatttttcaaacaagcctaaaatcggttaaatttggcgggaaggagggtatacttgtaaggctatgtttggggggtacagaagaaggcattttggagggtttcttgggctcttgtcttcccaagaaaatccaaatttcttga

Protein Analysis

578

Amino Acids

64.54

Weight (kDa)

6.05

Isoelectric Point (pI)

43.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29920 AT4G29920
fragaria_vesca FvH4_4g07050 FvH4_4g07050
malus_domestica MD00G1086800.v1.1 MD16G1247100.v1.1
prunus_persica Prupe.1G073700_v2.0.a1
pyrus_communis pycom13g21290 pycom16g20740
rosa_chinensis RchiOBHm_Chr4g0399171
rosa_laevigata RLG00000009293
rosa_multiflora Rmu_sc0002062.1_g000001 Rmu_sc0006088.1_g000002
rosa_roxburghii Rroxscaffold_5G00344130
rosa_rugosa Rorug04G0014600
rosa_samantha Rh4AG092500 Rh4BG090500 Rh4CG101000 Rh4DG084900
rosa_wichuraiana Rw4G007620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 152, 418
AccI GTMKAC 1 cut(s) 1645
AccII CGCG 1 cut(s) 1344
AciI CCGC 4 cut(s) 258, 1120, 1342, 1632
AclWI GGATC 2 cut(s) 39, 790
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 5 cut(s) 358, 458, 932, 1625, 1728
AcuI CTGAAG 1 cut(s) 372
AfaI GTAC 7 cut(s) 266, 307, 317, 451, 1034, 1081, 1672
AfiI CCNNNNNNNGG 4 cut(s) 844, 1094, 1374, 1618
AflIII ACRYGT 1 cut(s) 612
AhlI ACTAGT 1 cut(s) 1082
AjnI CCWGG 3 cut(s) 134, 332, 1036
AjuI GAANNNNNNNTTGG 2 cut(s) 496, 528
Alw26I GTCTC 1 cut(s) 427
AlwI GGATC 2 cut(s) 39, 790
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 3 cut(s) 115, 985, 1437
ApoI RAATTY 5 cut(s) 358, 458, 932, 1625, 1728
Asp700I GAANNNNTTC 3 cut(s) 657, 1226, 1400
AsuHPI GGTGA 2 cut(s) 1025, 1292
AsuII TTCGAA 1 cut(s) 1110
BalI TGGCCA 1 cut(s) 117
BanI GGYRCC 2 cut(s) 152, 418
BanII GRGCYC 1 cut(s) 1706
BbsI GAAGAC 2 cut(s) 1305, 1703
BccI CCATC 3 cut(s) 279, 716, 968
BcgI CGANNNNNNTGC 2 cut(s) 1286, 1320
BciT130I CCWGG 3 cut(s) 136, 334, 1038
BclI TGATCA 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 427
BcuI ACTAGT 1 cut(s) 1082
BfaI CTAG 4 cut(s) 938, 1083, 1089, 1425
BfmI CTRYAG 1 cut(s) 214
BglI GCCNNNNNGGC 1 cut(s) 136
BglII AGATCT 1 cut(s) 352
BmcAI AGTACT 2 cut(s) 307, 1081
Bme1390I CCNGG 3 cut(s) 136, 334, 1038
BmiI GGNNCC 5 cut(s) 154, 420, 501, 688, 1379
BmrFI CCNGG 3 cut(s) 136, 334, 1038
BmrI ACTGGG 1 cut(s) 916
BmsI GCATC 3 cut(s) 33, 351, 822
BmuI ACTGGG 1 cut(s) 916
BpiI GAAGAC 2 cut(s) 1305, 1703
Bpu14I TTCGAA 1 cut(s) 1110
BpuEI CTTGAG 2 cut(s) 741, 1216
BsaBI GATNNNNATC 1 cut(s) 978
BsaJI CCNNGG 9 cut(s) 226, 320, 403, 422, 507, 641, 1008, 1036, 1353
Bsc4I CCNNNNNNNGG 4 cut(s) 844, 1094, 1374, 1618
Bse118I RCCGGY 1 cut(s) 1277
Bse1I ACTGG 2 cut(s) 873, 922
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 3 cut(s) 136, 334, 1038
BseDI CCNNGG 9 cut(s) 226, 320, 403, 422, 507, 641, 1008, 1036, 1353
BseGI GGATG 3 cut(s) 178, 379, 1363
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 4 cut(s) 844, 1094, 1374, 1618
BseMII CTCAG 3 cut(s) 113, 538, 1119
BseNI ACTGG 2 cut(s) 873, 922
BseRI GAGGAG 1 cut(s) 205
BseYI CCCAGC 1 cut(s) 1420
BsgI GTGCAG 2 cut(s) 206, 620
Bsh1236I CGCG 1 cut(s) 1344
BshFI GGCC 3 cut(s) 117, 987, 1439
BshNI GGYRCC 2 cut(s) 152, 418
BsiSI CCGG 1 cut(s) 1278
BslI CCNNNNNNNGG 4 cut(s) 844, 1094, 1374, 1618
BsmAI GTCTC 1 cut(s) 427
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 3 cut(s) 117, 987, 1439
Bsp119I TTCGAA 1 cut(s) 1110
Bsp1286I GDGCHC 1 cut(s) 1706
Bsp1407I TGTACA 1 cut(s) 264
Bsp19I CCATGG 1 cut(s) 403
BspACI CCGC 4 cut(s) 258, 1120, 1342, 1632
BspANI GGCC 3 cut(s) 117, 987, 1439
BspCNI CTCAG 3 cut(s) 112, 537, 1120
BspFNI CGCG 1 cut(s) 1344
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 5 cut(s) 154, 420, 501, 688, 1379
BspPI GGATC 2 cut(s) 39, 790
BspT104I TTCGAA 1 cut(s) 1110
BspT107I GGYRCC 2 cut(s) 152, 418
BsrFI RCCGGY 1 cut(s) 1277
BsrGI TGTACA 1 cut(s) 264
BsrI ACTGG 2 cut(s) 873, 922
BssAI RCCGGY 1 cut(s) 1277
BssECI CCNNGG 9 cut(s) 226, 320, 403, 422, 507, 641, 1008, 1036, 1353
BssNAI GTATAC 1 cut(s) 1646
BssT1I CCWWGG 6 cut(s) 226, 320, 403, 507, 641, 1008
Bst1107I GTATAC 1 cut(s) 1646
Bst2UI CCWGG 3 cut(s) 136, 334, 1038
Bst4CI ACNGT 3 cut(s) 218, 598, 1253
Bst6I CTCTTC 3 cut(s) 964, 1406, 1530
BstAPI GCANNNNNTGC 1 cut(s) 127
BstAUI TGTACA 1 cut(s) 264
BstBI TTCGAA 1 cut(s) 1110
BstC8I GCNNGC 3 cut(s) 119, 132, 1105
BstDEI CTNAG 4 cut(s) 99, 524, 1128, 1589
BstDSI CCRYGG 2 cut(s) 403, 1353
BstF5I GGATG 3 cut(s) 178, 379, 1363
BstFNI CGCG 1 cut(s) 1344
BstMAI GTCTC 1 cut(s) 427
BstMWI GCNNNNNNNGC 2 cut(s) 127, 136
BstNI CCWGG 3 cut(s) 136, 334, 1038
BstNSI RCATGY 1 cut(s) 616
BstSCI CCNGG 3 cut(s) 134, 332, 1036
BstSFI CTRYAG 1 cut(s) 214
BstUI CGCG 1 cut(s) 1344
BstV2I GAAGAC 2 cut(s) 1305, 1703
BstX2I RGATCY 2 cut(s) 352, 782
BstYI RGATCY 2 cut(s) 352, 782
BstZ17I GTATAC 1 cut(s) 1646
BsuRI GGCC 3 cut(s) 117, 987, 1439
BtgI CCRYGG 2 cut(s) 403, 1353
BtsCI GGATG 3 cut(s) 178, 379, 1363
BtsIMutI CAGTG 2 cut(s) 532, 880
Cac8I GCNNGC 3 cut(s) 119, 132, 1105
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 1 cut(s) 34
Cfr10I RCCGGY 1 cut(s) 1277
Csp6I GTAC 7 cut(s) 265, 306, 316, 450, 1033, 1080, 1671
CviAII CATG 9 cut(s) 35, 47, 149, 404, 444, 488, 613, 696, 811
CviQI GTAC 7 cut(s) 265, 306, 316, 450, 1033, 1080, 1671
DdeI CTNAG 4 cut(s) 99, 524, 1128, 1589
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 3 cut(s) 964, 1406, 1530
EarI CTCTTC 3 cut(s) 964, 1406, 1530
Eco130I CCWWGG 6 cut(s) 226, 320, 403, 507, 641, 1008
Eco24I GRGCYC 1 cut(s) 1706
Eco32I GATATC 1 cut(s) 1542
Eco57I CTGAAG 1 cut(s) 372
EcoRI GAATTC 2 cut(s) 358, 458
EcoRII CCWGG 3 cut(s) 134, 332, 1036
EcoRV GATATC 1 cut(s) 1542
EcoT14I CCWWGG 6 cut(s) 226, 320, 403, 507, 641, 1008
EcoT38I GRGCYC 1 cut(s) 1706
ErhI CCWWGG 6 cut(s) 226, 320, 403, 507, 641, 1008
FaeI CATG 9 cut(s) 38, 50, 152, 407, 447, 491, 616, 699, 814
FalI AAGNNNNNCTT 4 cut(s) 244, 276, 1211, 1243
FatI CATG 9 cut(s) 34, 46, 148, 403, 443, 487, 612, 695, 810
FauI CCCGC 3 cut(s) 265, 1349, 1625
FbaI TGATCA 1 cut(s) 376
FblI GTMKAC 1 cut(s) 1645
FokI GGATG 3 cut(s) 185, 366, 1370
FriOI GRGCYC 1 cut(s) 1706
FspBI CTAG 4 cut(s) 938, 1083, 1089, 1425
GsaI CCCAGC 1 cut(s) 1424
HaeIII GGCC 3 cut(s) 117, 987, 1439
HapII CCGG 1 cut(s) 1278
Hin1II CATG 9 cut(s) 38, 50, 152, 407, 447, 491, 616, 699, 814
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HindIII AAGCTT 2 cut(s) 620, 1243
HpaII CCGG 1 cut(s) 1278
HphI GGTGA 2 cut(s) 1025, 1292
Hpy166II GTNNAC 3 cut(s) 330, 1020, 1646
Hpy188I TCNGA 7 cut(s) 243, 357, 391, 580, 652, 703, 717
Hpy188III TCNNGA 6 cut(s) 35, 430, 585, 1393, 1433, 1734
Hpy8I GTNNAC 3 cut(s) 330, 1020, 1646
Hpy99I CGWCG 1 cut(s) 598
HpyAV CCTTC 5 cut(s) 225, 741, 1216, 1630, 1673
HpyCH4III ACNGT 3 cut(s) 218, 598, 1253
HpyCH4V TGCA 6 cut(s) 75, 223, 398, 601, 835, 1307
HpyF10VI GCNNNNNNNGC 2 cut(s) 127, 136
HpyF3I CTNAG 4 cut(s) 99, 524, 1128, 1589
Hsp92II CATG 9 cut(s) 38, 50, 152, 407, 447, 491, 616, 699, 814
Ksp22I TGATCA 1 cut(s) 376
LmnI GCTCC 3 cut(s) 60, 692, 1135
LweI GCATC 3 cut(s) 33, 351, 822
MaeI CTAG 4 cut(s) 938, 1083, 1089, 1425
MaeIII GTNAC 2 cut(s) 875, 1253
MfeI CAATTG 1 cut(s) 282
MflI RGATCY 2 cut(s) 352, 782
MhlI GDGCHC 1 cut(s) 1706
MlsI TGGCCA 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 3 cut(s) 725, 1025, 1340
Mox20I TGGCCA 1 cut(s) 117
MroXI GAANNNNTTC 3 cut(s) 657, 1226, 1400
MscI TGGCCA 1 cut(s) 117
MseI TTAA 3 cut(s) 789, 929, 1623
Msp20I TGGCCA 1 cut(s) 117
MspI CCGG 1 cut(s) 1278
MspR9I CCNGG 3 cut(s) 136, 334, 1038
MunI CAATTG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 3 cut(s) 136, 334, 1038
MvnI CGCG 1 cut(s) 1344
MwoI GCNNNNNNNGC 2 cut(s) 127, 136
NcoI CCATGG 1 cut(s) 403
NlaIII CATG 9 cut(s) 38, 50, 152, 407, 447, 491, 616, 699, 814
NlaIV GGNNCC 5 cut(s) 154, 420, 501, 688, 1379
NmeAIII GCCGAG 1 cut(s) 540
NmuCI GTSAC 1 cut(s) 875
NspI RCATGY 1 cut(s) 616
NspV TTCGAA 1 cut(s) 1110
PagI TCATGA 1 cut(s) 34
PciI ACATGT 1 cut(s) 612
PcsI WCGNNNNNNNCGW 1 cut(s) 1389
PctI GAATGC 1 cut(s) 77
PdmI GAANNNNTTC 3 cut(s) 657, 1226, 1400
PfeI GAWTC 7 cut(s) 244, 512, 581, 653, 979, 1181, 1385
PleI GAGTC 3 cut(s) 725, 1024, 1340
PpsI GAGTC 3 cut(s) 725, 1024, 1340
PscI ACATGT 1 cut(s) 612
Psp6I CCWGG 3 cut(s) 134, 332, 1036
PspFI CCCAGC 1 cut(s) 1420
PspGI CCWGG 3 cut(s) 134, 332, 1036
PspN4I GGNNCC 5 cut(s) 154, 420, 501, 688, 1379
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 2 cut(s) 352, 782
RsaI GTAC 7 cut(s) 266, 307, 317, 451, 1034, 1081, 1672
RsaNI GTAC 7 cut(s) 265, 306, 316, 450, 1033, 1080, 1671
SaqAI TTAA 3 cut(s) 789, 929, 1623
ScaI AGTACT 2 cut(s) 307, 1081
SchI GAGTC 3 cut(s) 725, 1025, 1340
ScrFI CCNGG 3 cut(s) 136, 334, 1038
SduI GDGCHC 1 cut(s) 1706
SfaNI GCATC 3 cut(s) 33, 351, 822
SfcI CTRYAG 1 cut(s) 214
SfuI TTCGAA 1 cut(s) 1110
SmlI CTYRAG 2 cut(s) 756, 1231
SmoI CTYRAG 2 cut(s) 756, 1231
SpeI ACTAGT 1 cut(s) 1082
SsiI CCGC 4 cut(s) 258, 1120, 1342, 1632
SspI AATATT 1 cut(s) 996
SspMI CTAG 4 cut(s) 938, 1083, 1089, 1425
StyD4I CCNGG 3 cut(s) 134, 332, 1036
StyI CCWWGG 6 cut(s) 226, 320, 403, 507, 641, 1008
TaaI ACNGT 3 cut(s) 218, 598, 1253
TatI WGTACW 4 cut(s) 264, 305, 449, 1079
TfiI GAWTC 7 cut(s) 244, 512, 581, 653, 979, 1181, 1385
Tru1I TTAA 3 cut(s) 789, 929, 1623
Tru9I TTAA 3 cut(s) 789, 929, 1623
TscAI CASTG 2 cut(s) 532, 880
TseFI GTSAC 1 cut(s) 875
Tsp45I GTSAC 1 cut(s) 875
TspDTI ATGAA 8 cut(s) 51, 189, 300, 827, 988, 1070, 1086, 1305
TspGWI ACGGA 1 cut(s) 1370
TspRI CASTG 2 cut(s) 532, 880
XapI RAATTY 5 cut(s) 358, 458, 932, 1625, 1728
XceI RCATGY 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 1370
XmiI GTMKAC 1 cut(s) 1645
XmnI GAANNNNTTC 3 cut(s) 657, 1226, 1400
XspI CTAG 4 cut(s) 938, 1083, 1089, 1425
ZrmI AGTACT 2 cut(s) 307, 1081
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.