Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011356

Physical Location & Seq

Genomic Coordinates Reverse (-)

19647880 .. 19669316

Gene Structure 21437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG092500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2892 bp

ATGGAAGATAGAGTCGTTGACAAACAAAAGGGGAGGGCTTGGGGGGTGGGTTTTGATCGAGTGATGCGCTCAGGAGGTTGTGCGGTGCAGCAGACCCTCACAGCGGAGGCTGCTTCGGTTCTGAAGCACTCTCTCAGCTTAGCCAGGCGGAGAGGCCATGCTCAGGTCACTCCTCTCCACGTGGCCGCCACTCTCCTCGCCTCAAGAACCAGTCTCTTGAGGCGGGCCTGTCTCAAAGCTGCCGCAGCAGCCAACCACAACCCGCCACATCACCACCCTCTCCAATGCAGGGCCCTGGAGCTCTGCTTCAATGTGGCGCTTAACAGGCTCCCCACTACACCTCCCTCAGGAGGTGGCGGCGCCGCCAGTCCCCTGCTGGTCAACCACGGTCAGCACCACCAGCAGCAGCAGCCTTCTCTCTCCAATGCTCTCATTGCAGCTCTCAAAAGAGCCCAAGCTCACCAGAGAAGGGGGTGCATAGAGCAGCAGAATCAGCAGCAGCCACTTTTGACGATCAAGGTTGAGCTTGAGCAGCTGATCATCTCCATCTTGGATGACCCAAGTGTTAGCCGGGTTATGAGGGAAGCCGGGTTCTCAAGTACTTCAGTCAAGAACAACTTAGAGGACACCTCCTCTGTTTCCTCTGTTTCCTCTGTTTTCCAGTGTTATAATAGCACTGGTGGGGTTTTCTCTTCTCCTTGTTCACCTACCGCTCCTGAAAACTTAACCCATCATCATATCAGTCCATCTGGGAATTTCTGGCAAACCCATTTCTTGACTTACACTTCTGAGCAAAACCCACTCCTCTTTTCTTCCCCACCAAAGAAATTACTTCTTCCATTCAATGTTAGCTCCATTACTACTCCTACAGAGTCTGTCTCTTATTCCAAGGAAGATGTTAAGTTGGTGTTTGAGGTTTTAGTGAGGAAGAACAGTAAGAAAAGGAACACTGTGATTGTGGGCGATTCTGTGTCCATTACTGAAGGCCTTGTTGCTGAGGTCATGGGGAGGTTAGAGAGAGGGTCAGAGGTTCCTGAGGAACTGAAATCAACCCATTTCATCAAATTTCAGTTTCCACATGTTTCTTTGAGGTACATGAAAAGAGAAGATGTGGAATCAAATATCACAGAGCTCAAAAGGAAATTGGATCACTCTGGAGGAGGTGGTGCTATTATTTACATTGGAGACTTGAAATGGTCAATTGGTGATGAGAGAGAAGGAGGATTAGTCTCTGGTGGGTATAGCCCAGTTGAGCATTTAGTTTCAGAAATTTCAAGGTTGGTTTCAGATTATGAAAGCAGCTCATGCTCAAGCACAAAGCCAAAGGATGAAGTGGTTGAATTGAGGAGAAAGTGGAACAGGTTATGCTACAGTCTGCACCAAGGAAGGCATAATCCGAATCATTCAAGCCCCGCTTTGTACAACCATCAAAACTCAATTGGGACGAACCACTCTTATAGTACTTCATCGTACCCTTGGTTGTCAACCAGGAATGGCATCTTCCCAGATCTGAATTCGATCTCTTTTGCTGATCATCCAGCTTCAGACCCTGCAACCCATGGCTCTAATCTGGTGCCTCGGTTCAGGAGACAACAATCATGTAGTACAATCGAATTCAATTTCGATAATGGGGTTCAAAAGCATGAAGTAGTGGAACCAACCTTGGATTCTTTGAAACTCAGTGAAGATAAGGAAGTGAAGATCACACTTGCTCTCGGCAACTCTGTGTTATCTGATTCAGGAAAATCGACGGTGCAGAGAGCTGACATGTGTAAGCTTTTGAAAGAGAATGTGCCTTGGCAATCTGAATCCATTCCCTCAATAGTAGAAGCCATAATCGGCTCCAAACCATTTTCGGAAACTTGGTTCCTGATTGATGGGAATGACTCGATTGGAAAGAGAAGGTTGGCTCAAGCAATAGCAGAGTTGGTTCTGGGATCTGCTAATTCACTCTTACATATCAACATGAACAAAAGAGAAGATGAGATGCACCCAAGAGTGGAAAAACTAAAAAAAGCCTTGAAATCCAGTGACAAACTTGTTGTGTTGGTAGAAGATGTTGATTTGGCTGATACCCAGTTCTTAAAATTCCTAGCTGATCGAAAATGTGGAGAAGTGAGTAGAAGAGATGGGAATCAAGGCCAAGCAATATTCATTTTGACCAAGGGTGAGTCCACAAGAAATGAGTACCCAGGTTCTATAATCCAAATGAAGTTGAAAGTTGATGAAAAAAGTACTAGTCCTAGTTTTGGGATTGCCAGCTTCGAACACAAGCGGAAAGCTGAGTGGGAGCTTGAAAACAAGACCAAATCTACAAGATTTGAAGAAAAGGAGGATTCAAGTGTGGTTGTTGCCTTTGAGAATGTGAATAGCAAGAAGGACTTCTCAAGGCAATCAAGCTTCAACAGTAACCTTGATCTAAACCTCAAAGCCGGTGAGGACAATGAAATCGAAGACAATGCAGGGGAGGTTAGCCCTATTTCAAGTGATTTGACCCGCGACTCTGCCACGGATGTCCAAACCCCACTTGGGTTCCTCGAATCAGTCGAGAACCTCTTCGTTTTCAATCGAAGCCCAGCTAGAGATCGGGAGGCCACCGAGCTTTTCTTGTCCAAGATTGAGGGGTGCTTTGAGGGTGTATATGGGAAACAAAATGGGGTTAGTTTTAGTGTGGATAAGAGGGTGTTAGAAGAGATATCTGTTGGGTCTGGTTCTTTTCCCAATAGCTTGTTTGAGAAATGGCTAAGAGGTATTTTTCAAACAAGCCTAAAATCGGTTAAATTTGGCGGGAAGGAGGGTATACTTGTAAGGCTATGTTTGGGGGGTACAGAAGAAGGCATTTTGGAGGGTTTCTTGGGCTCTTGTCTTCCCAAGAAAATCCAAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0008150 GO:0009507 GO:0009536 GO:0010232 GO:0010233 GO:0032501 GO:0033500 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048878 GO:0051179 GO:0051234 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Clp_N

Protein Analysis

963

Amino Acids

106.32

Weight (kDa)

7.38

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NBD_SMAX1	PF23569	296 - 435	8.5e-51	SMAX1 nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011356)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G29920 AT4G29920
fragaria_vesca	FvH4_4g07050 FvH4_4g07050
malus_domestica	MD00G1086800.v1.1 MD16G1247100.v1.1
prunus_persica	Prupe.1G073700_v2.0.a1
pyrus_communis	pycom13g21290 pycom16g20740
rosa_chinensis	RchiOBHm_Chr4g0399171
rosa_laevigata	RLG00000009293
rosa_multiflora	Rmu_sc0002062.1_g000001 Rmu_sc0006088.1_g000002
rosa_roxburghii	Rroxscaffold_5G00344130
rosa_rugosa	Rorug04G0014600
rosa_samantha	Rh4AG092500 Rh4BG090500 Rh4CG101000 Rh4DG084900
rosa_wichuraiana	Rw4G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	669
AccB1I	GGYRCC	2 cut(s)	359, 1573
AccBSI	CCGCTC	1 cut(s)	713
AccI	GTMKAC	1 cut(s)	2800
AccII	CGCG	1 cut(s)	2499
AclWI	GGATC	2 cut(s)	1155, 1945
AcoI	YGGCCR	1 cut(s)	183
AcsI	RAATTY	8 cut(s)	754, 1064, 1269, 1513, 1613, 2087, 2780, 2883
AcuI	CTGAAG	4 cut(s)	143, 588, 1002, 1527
AcvI	CACGTG	1 cut(s)	181
AcyI	GRCGYC	1 cut(s)	360
AfaI	GTAC	9 cut(s)	601, 1094, 1421, 1462, 1472, 1606, 2189, 2236, 2827
AflIII	ACRYGT	2 cut(s)	1078, 1767
AhlI	ACTAGT	1 cut(s)	2237
AjnI	CCWGG	4 cut(s)	143, 294, 1487, 2191
AjuI	GAANNNNNNNTTGG	2 cut(s)	1651, 1683
AloI	GAACNNNNNNTCC	4 cut(s)	575, 607, 1850, 1882
Alw21I	GWGCWC	2 cut(s)	303, 1134
Alw26I	GTCTC	6 cut(s)	218, 236, 883, 1179, 1234, 1582
AlwI	GGATC	2 cut(s)	1155, 1945
AlwNI	CAGNNNCTG	2 cut(s)	875, 1550
AoxI	GGCC	7 cut(s)	154, 183, 225, 291, 985, 2140, 2592
ApaI	GGGCCC	1 cut(s)	295
ApoI	RAATTY	8 cut(s)	754, 1064, 1269, 1513, 1613, 2087, 2780, 2883
Asp700I	GAANNNNTTC	3 cut(s)	1812, 2381, 2555
AspLEI	GCGC	3 cut(s)	69, 319, 362
AspS9I	GGNCC	3 cut(s)	225, 291, 292
AsuC2I	CCSGG	2 cut(s)	572, 589
AsuHPI	GGTGA	6 cut(s)	263, 452, 696, 1217, 2180, 2447
AsuII	TTCGAA	1 cut(s)	2265
AxyI	CCTNAGG	2 cut(s)	346, 1035
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	2 cut(s)	359, 1573
BanII	GRGCYC	5 cut(s)	295, 303, 454, 1134, 2861
BbrPI	CACGTG	1 cut(s)	181
BbsI	GAAGAC	2 cut(s)	2460, 2858
Bbv12I	GWGCWC	2 cut(s)	303, 1134
BbvCI	CCTCAGC	1 cut(s)	996
BccI	CCATC	6 cut(s)	554, 738, 754, 1434, 1871, 2123
BcgI	CGANNNNNNTGC	2 cut(s)	2441, 2475
BciT130I	CCWGG	4 cut(s)	145, 296, 1489, 2193
BclI	TGATCA	2 cut(s)	537, 1531
BcnI	CCSGG	2 cut(s)	572, 589
BcoDI	GTCTC	6 cut(s)	218, 236, 883, 1179, 1234, 1582
BcuI	ACTAGT	1 cut(s)	2237
BfaI	CTAG	4 cut(s)	2093, 2238, 2244, 2580
BfmI	CTRYAG	2 cut(s)	867, 1369
BfoI	RGCGCY	2 cut(s)	320, 363
BglII	AGATCT	1 cut(s)	1507
BlpI	GCTNAGC	1 cut(s)	139
BmcAI	AGTACT	3 cut(s)	601, 1462, 2236
Bme1390I	CCNGG	6 cut(s)	145, 296, 572, 589, 1489, 2193
BmgT120I	GGNCC	3 cut(s)	225, 291, 292
BmiI	GGNNCC	9 cut(s)	293, 329, 361, 1032, 1575, 1656, 1843, 1868, 2534
BmrFI	CCNGG	6 cut(s)	145, 296, 572, 589, 1489, 2193
BmrI	ACTGGG	2 cut(s)	1241, 2071
BmsI	GCATC	3 cut(s)	54, 1506, 1977
BmuI	ACTGGG	2 cut(s)	1241, 2071
BpiI	GAAGAC	2 cut(s)	2460, 2858
BplI	GAGNNNNNCTC	4 cut(s)	614, 646, 863, 895
BpmI	CTGGAG	2 cut(s)	317, 1176
Bpu10I	CCTNAGC	3 cut(s)	70, 162, 996
Bpu1102I	GCTNAGC	1 cut(s)	139
Bpu14I	TTCGAA	1 cut(s)	2265
BpuEI	CTTGAG	7 cut(s)	187, 238, 548, 580, 1294, 1896, 2371
BpuMI	CCSGG	2 cut(s)	572, 589
BsaAI	YACGTR	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	2133
BsaHI	GRCGYC	1 cut(s)	360
BsaXI	ACNNNNNCTCC	4 cut(s)	325, 355, 1212, 1242
Bse118I	RCCGGY	1 cut(s)	2432
Bse1I	ACTGG	7 cut(s)	210, 366, 661, 682, 1247, 2028, 2077
Bse21I	CCTNAGG	2 cut(s)	346, 1035
Bse3DI	GCAATG	1 cut(s)	432
Bse8I	GATNNNNATC	1 cut(s)	2133
BseBI	CCWGG	4 cut(s)	145, 296, 1489, 2193
BseGI	GGATG	4 cut(s)	559, 1333, 1534, 2518
BseJI	GATNNNNATC	1 cut(s)	2133
BseMI	GCAATG	1 cut(s)	432
BseMII	CTCAG	9 cut(s)	84, 148, 176, 360, 780, 987, 1026, 1693, 2274
BseNI	ACTGG	7 cut(s)	210, 366, 661, 682, 1247, 2028, 2077
BseRI	GAGGAG	6 cut(s)	162, 185, 622, 794, 1173, 1360
BseSI	GKGCMC	1 cut(s)	295
BseYI	CCCAGC	1 cut(s)	2575
BsgI	GTGCAG	3 cut(s)	107, 1361, 1775
Bsh1236I	CGCG	1 cut(s)	2499
BshFI	GGCC	7 cut(s)	156, 185, 227, 293, 987, 2142, 2594
BshNI	GGYRCC	2 cut(s)	359, 1573
BsiHKAI	GWGCWC	2 cut(s)	303, 1134
BsiSI	CCGG	3 cut(s)	571, 588, 2433
BslFI	GGGAC	2 cut(s)	354, 1456
BsmAI	GTCTC	6 cut(s)	218, 236, 883, 1179, 1234, 1582
BsmFI	GGGAC	2 cut(s)	354, 1456
BsnI	GGCC	7 cut(s)	156, 185, 227, 293, 987, 2142, 2594
Bsp119I	TTCGAA	1 cut(s)	2265
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	5 cut(s)	295, 303, 454, 1134, 2861
Bsp1407I	TGTACA	1 cut(s)	1419
Bsp1720I	GCTNAGC	1 cut(s)	139
Bsp19I	CCATGG	1 cut(s)	1558
BspANI	GGCC	7 cut(s)	156, 185, 227, 293, 987, 2142, 2594
BspCNI	CTCAG	9 cut(s)	83, 147, 175, 359, 781, 988, 1027, 1692, 2275
BspFNI	CGCG	1 cut(s)	2499
BspLI	GGNNCC	9 cut(s)	293, 329, 361, 1032, 1575, 1656, 1843, 1868, 2534
BspPI	GGATC	2 cut(s)	1155, 1945
BspT104I	TTCGAA	1 cut(s)	2265
BspT107I	GGYRCC	2 cut(s)	359, 1573
BsrBI	CCGCTC	1 cut(s)	713
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	2432
BsrGI	TGTACA	1 cut(s)	1419
BsrI	ACTGG	7 cut(s)	210, 366, 661, 682, 1247, 2028, 2077
BssAI	RCCGGY	1 cut(s)	2432
BssNAI	GTATAC	1 cut(s)	2801
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	7 cut(s)	888, 1381, 1475, 1558, 1662, 1796, 2163
Bst1107I	GTATAC	1 cut(s)	2801
Bst2UI	CCWGG	4 cut(s)	145, 296, 1489, 2193
Bst4CI	ACNGT	6 cut(s)	389, 935, 952, 1373, 1753, 2408
Bst6I	CTCTTC	4 cut(s)	697, 2119, 2561, 2685
BstACI	GRCGYC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	1305
BstAUI	TGTACA	1 cut(s)	1419
BstBAI	YACGTR	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	2265
BstC8I	GCNNGC	2 cut(s)	225, 2260
BstDSI	CCRYGG	3 cut(s)	385, 1558, 2508
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstF5I	GGATG	4 cut(s)	559, 1333, 1534, 2518
BstFNI	CGCG	1 cut(s)	2499
BstH2I	RGCGCY	2 cut(s)	320, 363
BstHHI	GCGC	3 cut(s)	69, 319, 362
BstMAI	GTCTC	6 cut(s)	218, 236, 883, 1179, 1234, 1582
BstNI	CCWGG	4 cut(s)	145, 296, 1489, 2193
BstNSI	RCATGY	2 cut(s)	1082, 1771
BstSCI	CCNGG	6 cut(s)	143, 294, 570, 587, 1487, 2191
BstSFI	CTRYAG	2 cut(s)	867, 1369
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	2499
BstV2I	GAAGAC	2 cut(s)	2460, 2858
BstX2I	RGATCY	2 cut(s)	1507, 1937
BstYI	RGATCY	2 cut(s)	1507, 1937
BstZ17I	GTATAC	1 cut(s)	2801
Bsu36I	CCTNAGG	2 cut(s)	346, 1035
BsuRI	GGCC	7 cut(s)	156, 185, 227, 293, 987, 2142, 2594
BtgI	CCRYGG	3 cut(s)	385, 1558, 2508
BtsCI	GGATG	4 cut(s)	559, 1333, 1534, 2518
BtsIMutI	CAGTG	5 cut(s)	668, 675, 948, 1687, 2035
Cac8I	GCNNGC	2 cut(s)	225, 2260
CaiI	CAGNNNCTG	2 cut(s)	875, 1550
CfoI	GCGC	3 cut(s)	69, 319, 362
Cfr10I	RCCGGY	1 cut(s)	2432
Cfr13I	GGNCC	3 cut(s)	225, 291, 292
Csp6I	GTAC	9 cut(s)	600, 1093, 1420, 1461, 1471, 1605, 2188, 2235, 2826
CviQI	GTAC	9 cut(s)	600, 1093, 1420, 1461, 1471, 1605, 2188, 2235, 2826
DinI	GGCGCC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	4 cut(s)	697, 2119, 2561, 2685
EarI	CTCTTC	4 cut(s)	697, 2119, 2561, 2685
EciI	GGCGGA	1 cut(s)	163
Ecl136II	GAGCTC	2 cut(s)	301, 1132
Eco130I	CCWWGG	7 cut(s)	888, 1381, 1475, 1558, 1662, 1796, 2163
Eco147I	AGGCCT	1 cut(s)	987
Eco24I	GRGCYC	5 cut(s)	295, 303, 454, 1134, 2861
Eco32I	GATATC	1 cut(s)	2697
Eco53kI	GAGCTC	2 cut(s)	301, 1132
Eco57I	CTGAAG	4 cut(s)	143, 588, 1002, 1527
Eco72I	CACGTG	1 cut(s)	181
Eco81I	CCTNAGG	2 cut(s)	346, 1035
EcoICRI	GAGCTC	2 cut(s)	301, 1132
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	2 cut(s)	291, 292
EcoRI	GAATTC	2 cut(s)	1513, 1613
EcoRII	CCWGG	4 cut(s)	143, 294, 1487, 2191
EcoRV	GATATC	1 cut(s)	2697
EcoT14I	CCWWGG	7 cut(s)	888, 1381, 1475, 1558, 1662, 1796, 2163
EcoT38I	GRGCYC	5 cut(s)	295, 303, 454, 1134, 2861
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
ErhI	CCWWGG	7 cut(s)	888, 1381, 1475, 1558, 1662, 1796, 2163
FalI	AAGNNNNNCTT	6 cut(s)	602, 634, 1399, 1431, 2366, 2398
FaqI	GGGAC	2 cut(s)	354, 1456
FauI	CCCGC	5 cut(s)	216, 270, 1420, 2504, 2780
FbaI	TGATCA	2 cut(s)	537, 1531
FblI	GTMKAC	1 cut(s)	2800
FokI	GGATG	4 cut(s)	566, 1340, 1521, 2525
FriOI	GRGCYC	5 cut(s)	295, 303, 454, 1134, 2861
FspBI	CTAG	4 cut(s)	2093, 2238, 2244, 2580
GlaI	GCGC	3 cut(s)	68, 318, 361
GsaI	CCCAGC	1 cut(s)	2579
GsuI	CTGGAG	2 cut(s)	317, 1176
HaeII	RGCGCY	2 cut(s)	320, 363
HaeIII	GGCC	7 cut(s)	156, 185, 227, 293, 987, 2142, 2594
HapII	CCGG	3 cut(s)	571, 588, 2433
HhaI	GCGC	3 cut(s)	69, 319, 362
Hin1I	GRCGYC	1 cut(s)	360
Hin6I	GCGC	3 cut(s)	67, 317, 360
HinP1I	GCGC	3 cut(s)	67, 317, 360
HincII	GTYRAC	3 cut(s)	19, 382, 1485
HindII	GTYRAC	3 cut(s)	19, 382, 1485
HindIII	AAGCTT	2 cut(s)	1775, 2398
HpaII	CCGG	3 cut(s)	571, 588, 2433
HphI	GGTGA	6 cut(s)	263, 452, 696, 1217, 2180, 2447
Hpy166II	GTNNAC	6 cut(s)	19, 382, 704, 1485, 2175, 2801
Hpy8I	GTNNAC	6 cut(s)	19, 382, 704, 1485, 2175, 2801
Hpy99I	CGWCG	1 cut(s)	1753
HpyAV	CCTTC	9 cut(s)	423, 462, 977, 1211, 1380, 1896, 2371, 2785, 2828
HpyCH4III	ACNGT	6 cut(s)	389, 935, 952, 1373, 1753, 2408
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	9 cut(s)	88, 288, 437, 477, 1378, 1553, 1756, 1990, 2462
HpySE526I	ACGT	1 cut(s)	180
Hsp92I	GRCGYC	1 cut(s)	360
HspAI	GCGC	3 cut(s)	67, 317, 360
KasI	GGCGCC	1 cut(s)	359
Ksp22I	TGATCA	2 cut(s)	537, 1531
LmnI	GCTCC	6 cut(s)	298, 333, 718, 857, 1847, 2290
LweI	GCATC	3 cut(s)	54, 1506, 1977
MaeI	CTAG	4 cut(s)	2093, 2238, 2244, 2580
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	3 cut(s)	166, 2030, 2408
MbiI	CCGCTC	1 cut(s)	713
MfeI	CAATTG	2 cut(s)	1200, 1437
MflI	RGATCY	2 cut(s)	1507, 1937
MhlI	GDGCHC	5 cut(s)	295, 303, 454, 1134, 2861
Mly113I	GGCGCC	1 cut(s)	360
MlyI	GAGTC	5 cut(s)	21, 881, 1880, 2180, 2495
MroXI	GAANNNNTTC	3 cut(s)	1812, 2381, 2555
MseI	TTAA	5 cut(s)	321, 725, 900, 2084, 2778
MspA1I	CMGCKG	2 cut(s)	104, 535
MspI	CCGG	3 cut(s)	571, 588, 2433
MspR9I	CCNGG	6 cut(s)	145, 296, 572, 589, 1489, 2193
MunI	CAATTG	2 cut(s)	1200, 1437
MvaI	CCWGG	4 cut(s)	145, 296, 1489, 2193
MvnI	CGCG	1 cut(s)	2499
NarI	GGCGCC	1 cut(s)	360
NciI	CCSGG	2 cut(s)	572, 589
NcoI	CCATGG	1 cut(s)	1558
NlaIV	GGNNCC	9 cut(s)	293, 329, 361, 1032, 1575, 1656, 1843, 1868, 2534
NmeAIII	GCCGAG	1 cut(s)	1695
NmuCI	GTSAC	2 cut(s)	166, 2030
NspI	RCATGY	2 cut(s)	1082, 1771
NspV	TTCGAA	1 cut(s)	2265
PceI	AGGCCT	1 cut(s)	987
PciI	ACATGT	2 cut(s)	1078, 1767
PcsI	WCGNNNNNNNCGW	1 cut(s)	2544
PdmI	GAANNNNTTC	3 cut(s)	1812, 2381, 2555
PleI	GAGTC	5 cut(s)	20, 880, 1880, 2179, 2495
PluTI	GGCGCC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	181
PmlI	CACGTG	1 cut(s)	181
PpsI	GAGTC	5 cut(s)	20, 880, 1880, 2179, 2495
Ppu21I	YACGTR	1 cut(s)	181
PscI	ACATGT	2 cut(s)	1078, 1767
PsiI	TTATAA	1 cut(s)	669
Psp124BI	GAGCTC	2 cut(s)	303, 1134
Psp6I	CCWGG	4 cut(s)	143, 294, 1487, 2191
PspCI	CACGTG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	2575
PspGI	CCWGG	4 cut(s)	143, 294, 1487, 2191
PspN4I	GGNNCC	9 cut(s)	293, 329, 361, 1032, 1575, 1656, 1843, 1868, 2534
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	3 cut(s)	225, 291, 292
PstNI	CAGNNNCTG	2 cut(s)	875, 1550
PsuI	RGATCY	2 cut(s)	1507, 1937
PvuII	CAGCTG	1 cut(s)	535
RsaI	GTAC	9 cut(s)	601, 1094, 1421, 1462, 1472, 1606, 2189, 2236, 2827
RsaNI	GTAC	9 cut(s)	600, 1093, 1420, 1461, 1471, 1605, 2188, 2235, 2826
SacI	GAGCTC	2 cut(s)	303, 1134
SaqAI	TTAA	5 cut(s)	321, 725, 900, 2084, 2778
Sau96I	GGNCC	3 cut(s)	225, 291, 292
ScaI	AGTACT	3 cut(s)	601, 1462, 2236
SchI	GAGTC	5 cut(s)	21, 881, 1880, 2180, 2495
ScrFI	CCNGG	6 cut(s)	145, 296, 572, 589, 1489, 2193
SduI	GDGCHC	5 cut(s)	295, 303, 454, 1134, 2861
SfaNI	GCATC	3 cut(s)	54, 1506, 1977
SfcI	CTRYAG	2 cut(s)	867, 1369
SfoI	GGCGCC	1 cut(s)	361
SfuI	TTCGAA	1 cut(s)	2265
SmlI	CTYRAG	7 cut(s)	202, 217, 527, 595, 1309, 1911, 2386
SmoI	CTYRAG	7 cut(s)	202, 217, 527, 595, 1309, 1911, 2386
SpeI	ACTAGT	1 cut(s)	2237
SseBI	AGGCCT	1 cut(s)	987
SspDI	GGCGCC	1 cut(s)	359
SspI	AATATT	1 cut(s)	2151
SspMI	CTAG	4 cut(s)	2093, 2238, 2244, 2580
SstI	GAGCTC	2 cut(s)	303, 1134
StuI	AGGCCT	1 cut(s)	987
StyD4I	CCNGG	6 cut(s)	143, 294, 570, 587, 1487, 2191
StyI	CCWWGG	7 cut(s)	888, 1381, 1475, 1558, 1662, 1796, 2163
TaaI	ACNGT	6 cut(s)	389, 935, 952, 1373, 1753, 2408
TaiI	ACGT	1 cut(s)	183
TatI	WGTACW	5 cut(s)	599, 1419, 1460, 1604, 2234
TauI	GCSGC	4 cut(s)	188, 245, 360, 365
Tru1I	TTAA	5 cut(s)	321, 725, 900, 2084, 2778
Tru9I	TTAA	5 cut(s)	321, 725, 900, 2084, 2778
TscAI	CASTG	5 cut(s)	668, 682, 955, 1687, 2035
TseFI	GTSAC	2 cut(s)	166, 2030
Tsp45I	GTSAC	2 cut(s)	166, 2030
TspGWI	ACGGA	1 cut(s)	2525
TspRI	CASTG	5 cut(s)	668, 682, 955, 1687, 2035
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	8 cut(s)	754, 1064, 1269, 1513, 1613, 2087, 2780, 2883
XceI	RCATGY	2 cut(s)	1082, 1771
XcmI	CCANNNNNNNNNTGG	2 cut(s)	373, 2525
XmiI	GTMKAC	1 cut(s)	2800
XmnI	GAANNNNTTC	3 cut(s)	1812, 2381, 2555
XspI	CTAG	4 cut(s)	2093, 2238, 2244, 2580
ZrmI	AGTACT	3 cut(s)	601, 1462, 2236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.