pycom16g20740

vascular transport

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
18679935 .. 18683585
3651 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g20740.2

Sequence Viewer

Length: 1959 bp
ATGGGAACTGCAAGTTACCAGACACACATGAGGTGCCAAATTAGGCAGCCACCTCTTGAGAGTCAATGGTGTCTTCAAGCTGTTTCTGTTCCTTCTGGTGGTCTTGGTCTCTCCCTTCATGCTTGCAGTGTCCAAGACTCAAGATTAATAATCTCTCAAAAACCATCTGAACTTCTGGAAACAAAACCAATATTCAATAGCAAGGAGCAATATCATAATAATAACAAGCTCACTTGCTGTCAAGAATGCATTTCAAATTATGAAAAGGAATCTCAGCTCTTGAAATCTGACGAGCAGAAATTGCCTGCCTGGCTGCAACCACATGGAACCGAAGCCCGCCAAAAGGATGAAGTAGCTCAATTGAGGAAAAAGTGGAACAGCTTATGCTGCAGTCTGCACCAAGGAAGACATGCAGCTCAGAACAACTTGAGCTCTTCTAATTTGTACGACAATCAAAGCGTAATTGGAAACAAGTCCTCTTATGCTTCAGCATACCCTTGGTGGTCTACCAAGAATGGCTTCTCTCCAGATCCGAATTCAATCTCCTTCGGTCACGATCCAGCTTCGGAGCTTGCTCACGGCTCTAGTCTTGTGCCTCGATTCAGGAGACAACAATCGTGCATGATTGAGTTCAACTTCGACAATGGGGTCCAAAAGAATCAAGTGACGGAACCAAGTCTGGATTCTCTGGTAAACACTGAAGGCAAGGAACTGAAGATCACTCTTGCTCTTGGCAACTCTCTGTTTTTGGGCTCGGAGAAAGTGGTGGAGAGAAAATGCACTGAAAGAACAATGCAGAGAGCTGACATGTGCAAGCTACTGAAAGAGAATGTTCCTTGGCAATCCGAATCCATTCCTTCAATTGTAGAAGCGATTTTCAACTCTAAAACTGCCAGGCAGGAGACTTGGTTGCTGATTCAGGGGAATGACTCGATTGGAAAAAGAAGGCTGGCACATGCAATTGCTGAATTGGTTCTTGGGTCTGCTGATTCACTCCTCCATATCGACATCAACAAAAATGAAAATGAGATGAACCCGAGAGTAGAAGTTGTAGCAAGAGCCTTGAAATCCAATGAGAAACTTGTTGTCTTGGTAGAAGATGTTGATATGGCTGACACCCAGTTCTTGAAATTTTTAGCTGACGGTTTCGAGAACCGAAAATTTGGAGAAGTTAGTAGAAGTGAAGGGATTCAAAGCCAAGCCATATTCATCTTGGCTAAGAGTGACTCAACAAGATATGACGAAGAGAAGGCCAAGTACCCGGATTCTATAATCCAAATGGCGTTGAAGGTTGATGAGAAAGCTAGTGCTAGTCCAAGTTTTCGGGGAGTTAACTTCGATCACAAGAGAAAGGCTGAGTGGGAGCTACAAATCAAGACCAAGAGTTCAAGAAGTGGAGAGAAGGAAGATCCAAGTGTGGTTGCTGTTGAGAATGTGAATAACAAGGAGGTCTTCTCAAGGCAATCAAGCTTCAACACCCTTGATCTCAACCTCAAAGCCGGGGAGGACGATGAAATCGAAGACAAGGCAGGGGAGCTGAGCCCCAATTCAAGTGACTTAACTCGCGAAACCAACACCGATCTCGAAACCCCACATGGGTTCCTGGAATCGATTGAGAACGTCATTGTTTTCAATCGGAGCCCGGCTAGAGATCGAGAGGCAACCGAGCTTTTCTTGTCCAAGATTGAAGGGTGTTTTGGGGAGGTATATGGGAAACTAAATGTGGTTAGATTTAGTGTGGATAAGAGGGTGTTAGAGGGGGTTTGTATTGGGTCTGGATATTTTCCCAATAGCTTGTTTGAGAAATGGCTGAAAGACATTTTTCAGACAAGCTTGAGGGCGGTCAAACTTAGCGGGAAAGAGGGTATACTTGTAAGGCTCTGTTTGGGTGACAAAGAAGATGGCATTTTGGAGGGTTTCTTGGGTTCTTGTCTTCCTATGAAAATCCATATTTCTTGA

Protein Analysis

653

Amino Acids

73.06

Weight (kDa)

5.86

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011356)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 647
AccB1I GGYRCC 1 cut(s) 33
AccI GTMKAC 2 cut(s) 506, 1867
AccII CGCG 1 cut(s) 1566
AciI CCGC 3 cut(s) 337, 1841, 1854
AclWI GGATC 3 cut(s) 524, 551, 1403
AcsI RAATTY 3 cut(s) 535, 1130, 1160
AcuI CTGAAG 3 cut(s) 471, 720, 734
AfaI GTAC 2 cut(s) 446, 1259
AfiI CCNNNNNNNGG 3 cut(s) 98, 343, 1596
AflIII ACRYGT 1 cut(s) 807
AjnI CCWGG 3 cut(s) 308, 893, 1602
AjuI GAANNNNNNNTTGG 8 cut(s) 503, 535, 667, 699, 960, 992, 1680, 1712
Alw21I GWGCWC 1 cut(s) 434
Alw26I GTCTC 3 cut(s) 113, 601, 896
AlwI GGATC 3 cut(s) 524, 551, 1403
Ama87I CYCGRG 1 cut(s) 1036
AoxI GGCC 1 cut(s) 1251
ApeKI GCWGC 4 cut(s) 46, 313, 387, 413
ApoI RAATTY 3 cut(s) 535, 1130, 1160
AseI ATTAAT 1 cut(s) 146
Asp700I GAANNNNTTC 4 cut(s) 518, 852, 972, 1188
AspS9I GGNCC 1 cut(s) 649
AsuC2I CCSGG 3 cut(s) 1262, 1501, 1643
AsuHPI GGTGA 1 cut(s) 1901
AvaI CYCGRG 1 cut(s) 1036
AvaII GGWCC 1 cut(s) 649
BanI GGYRCC 1 cut(s) 33
BanII GRGCYC 4 cut(s) 434, 755, 1544, 1643
BarI GAAGNNNNNNTAC 2 cut(s) 1241, 1273
BbsI GAAGAC 5 cut(s) 65, 412, 1444, 1527, 1925
Bbv12I GWGCWC 1 cut(s) 434
BbvI GCAGC 4 cut(s) 58, 300, 374, 425
BccI CCATC 2 cut(s) 172, 1895
BceAI ACGGC 1 cut(s) 595
BciT130I CCWGG 3 cut(s) 310, 895, 1604
BcnI CCSGG 3 cut(s) 1262, 1501, 1643
BcoDI GTCTC 3 cut(s) 113, 601, 896
BfaI CTAG 4 cut(s) 585, 1305, 1311, 1647
BfmI CTRYAG 1 cut(s) 388
BglI GCCNNNNNGGC 1 cut(s) 310
BisI GCNGC 4 cut(s) 47, 314, 388, 414
BlpI GCTNAGC 1 cut(s) 1538
BlsI GCNGC 4 cut(s) 48, 315, 389, 415
Bme1390I CCNGG 6 cut(s) 310, 895, 1262, 1501, 1604, 1643
Bme18I GGWCC 1 cut(s) 649
BmeT110I CYCGRG 1 cut(s) 1036
BmgT120I GGNCC 1 cut(s) 649
BmiI GGNNCC 6 cut(s) 35, 328, 650, 672, 1601, 1640
BmrFI CCNGG 6 cut(s) 310, 895, 1262, 1501, 1604, 1643
BmrI ACTGGG 1 cut(s) 1114
BmuI ACTGGG 1 cut(s) 1114
BpiI GAAGAC 5 cut(s) 65, 412, 1444, 1527, 1925
BplI GAGNNNNNCTC 2 cut(s) 1439, 1471
BpmI CTGGAG 1 cut(s) 510
Bpu1102I GCTNAGC 1 cut(s) 1538
BpuEI CTTGAG 5 cut(s) 77, 124, 448, 1441, 1855
BpuMI CCSGG 3 cut(s) 1262, 1501, 1643
Bsa29I ATCGAT 1 cut(s) 1610
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 4 cut(s) 400, 497, 836, 1500
BsaXI ACNNNNNCTCC 2 cut(s) 893, 923
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 343, 1596
Bse1I ACTGG 1 cut(s) 1120
BseBI CCWGG 3 cut(s) 310, 895, 1604
BseCI ATCGAT 1 cut(s) 1610
BseDI CCNNGG 4 cut(s) 400, 497, 836, 1500
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 3 cut(s) 98, 343, 1596
BseMII CTCAG 4 cut(s) 287, 431, 1347, 1529
BseNI ACTGG 1 cut(s) 1120
BseRI GAGGAG 1 cut(s) 986
BseXI GCAGC 4 cut(s) 58, 300, 374, 425
BsgI GTGCAG 1 cut(s) 380
Bsh1236I CGCG 1 cut(s) 1566
BshFI GGCC 1 cut(s) 1253
BshNI GGYRCC 1 cut(s) 33
BshVI ATCGAT 1 cut(s) 1610
BsiHKAI GWGCWC 1 cut(s) 434
BsiHKCI CYCGRG 1 cut(s) 1036
BsiSI CCGG 3 cut(s) 1262, 1500, 1643
BslI CCNNNNNNNGG 3 cut(s) 98, 343, 1596
BsmAI GTCTC 3 cut(s) 113, 601, 896
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 1253
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 1036
Bsp1286I GDGCHC 4 cut(s) 434, 755, 1544, 1643
Bsp143I GATC 8 cut(s) 529, 556, 717, 1339, 1408, 1483, 1579, 1651
Bsp1720I GCTNAGC 1 cut(s) 1538
Bsp68I TCGCGA 1 cut(s) 1566
BspACI CCGC 3 cut(s) 337, 1841, 1854
BspANI GGCC 1 cut(s) 1253
BspCNI CTCAG 4 cut(s) 286, 430, 1348, 1530
BspDI ATCGAT 1 cut(s) 1610
BspFNI CGCG 1 cut(s) 1566
BspLI GGNNCC 6 cut(s) 35, 328, 650, 672, 1601, 1640
BspMAI CTGCAG 1 cut(s) 392
BspPI GGATC 3 cut(s) 524, 551, 1403
BspQI GCTCTTC 1 cut(s) 439
BspT107I GGYRCC 1 cut(s) 33
BspTNI GGTCTC 1 cut(s) 113
BsrI ACTGG 1 cut(s) 1120
BssECI CCNNGG 4 cut(s) 400, 497, 836, 1500
BssMI GATC 8 cut(s) 529, 556, 717, 1339, 1408, 1483, 1579, 1651
BssNAI GTATAC 1 cut(s) 1868
BssT1I CCWWGG 3 cut(s) 400, 497, 836
Bst1107I GTATAC 1 cut(s) 1868
Bst2UI CCWGG 3 cut(s) 310, 895, 1604
Bst4CI ACNGT 1 cut(s) 1145
Bst6I CTCTTC 2 cut(s) 439, 1239
BstAPI GCANNNNNTGC 1 cut(s) 301
BstC8I GCNNGC 6 cut(s) 124, 306, 337, 573, 815, 951
BstDEI CTNAG 6 cut(s) 273, 417, 1218, 1356, 1538, 1850
BstF5I GGATG 1 cut(s) 352
BstFNI CGCG 1 cut(s) 1566
BstKTI GATC 8 cut(s) 532, 559, 720, 1342, 1411, 1486, 1582, 1654
BstMAI GTCTC 3 cut(s) 113, 601, 896
BstMBI GATC 8 cut(s) 529, 556, 717, 1339, 1408, 1483, 1579, 1651
BstMWI GCNNNNNNNGC 3 cut(s) 301, 310, 387
BstNI CCWGG 3 cut(s) 310, 895, 1604
BstNSI RCATGY 3 cut(s) 413, 811, 959
BstSCI CCNGG 6 cut(s) 308, 893, 1260, 1499, 1602, 1641
BstSFI CTRYAG 1 cut(s) 388
BstUI CGCG 1 cut(s) 1566
BstV1I GCAGC 4 cut(s) 58, 300, 374, 425
BstV2I GAAGAC 5 cut(s) 65, 412, 1444, 1527, 1925
BstX2I RGATCY 2 cut(s) 529, 1408
BstYI RGATCY 2 cut(s) 529, 1408
BstZ17I GTATAC 1 cut(s) 1868
Bsu15I ATCGAT 1 cut(s) 1610
BsuRI GGCC 1 cut(s) 1253
BsuTUI ATCGAT 1 cut(s) 1610
BtsCI GGATG 1 cut(s) 352
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 3 cut(s) 133, 696, 780
BtuMI TCGCGA 1 cut(s) 1566
Cac8I GCNNGC 6 cut(s) 124, 306, 337, 573, 815, 951
Cfr13I GGNCC 1 cut(s) 649
ClaI ATCGAT 1 cut(s) 1610
Csp6I GTAC 2 cut(s) 445, 1258
CviAII CATG 8 cut(s) 28, 119, 323, 410, 622, 808, 956, 1595
CviQI GTAC 2 cut(s) 445, 1258
DdeI CTNAG 6 cut(s) 273, 417, 1218, 1356, 1538, 1850
DpnI GATC 8 cut(s) 531, 558, 719, 1341, 1410, 1485, 1581, 1653
DpnII GATC 8 cut(s) 529, 556, 717, 1339, 1408, 1483, 1579, 1651
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 2 cut(s) 439, 1239
EarI CTCTTC 2 cut(s) 439, 1239
Ecl136II GAGCTC 1 cut(s) 432
Eco130I CCWWGG 3 cut(s) 400, 497, 836
Eco24I GRGCYC 4 cut(s) 434, 755, 1544, 1643
Eco31I GGTCTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 649
Eco53kI GAGCTC 1 cut(s) 432
Eco57I CTGAAG 3 cut(s) 471, 720, 734
Eco88I CYCGRG 1 cut(s) 1036
EcoICRI GAGCTC 1 cut(s) 432
EcoRI GAATTC 1 cut(s) 535
EcoRII CCWGG 3 cut(s) 308, 893, 1602
EcoT14I CCWWGG 3 cut(s) 400, 497, 836
EcoT22I ATGCAT 1 cut(s) 251
EcoT38I GRGCYC 4 cut(s) 434, 755, 1544, 1643
ErhI CCWWGG 3 cut(s) 400, 497, 836
FaeI CATG 8 cut(s) 31, 122, 326, 413, 625, 811, 959, 1598
FalI AAGNNNNNCTT 4 cut(s) 503, 535, 1436, 1468
FatI CATG 8 cut(s) 27, 118, 322, 409, 621, 807, 955, 1594
FauI CCCGC 2 cut(s) 344, 1847
FblI GTMKAC 2 cut(s) 506, 1867
Fnu4HI GCNGC 4 cut(s) 47, 314, 388, 414
FokI GGATG 1 cut(s) 359
FriOI GRGCYC 4 cut(s) 434, 755, 1544, 1643
Fsp4HI GCNGC 4 cut(s) 47, 314, 388, 414
FspBI CTAG 4 cut(s) 585, 1305, 1311, 1647
GluI GCNGC 4 cut(s) 47, 314, 388, 414
GsuI CTGGAG 1 cut(s) 510
HaeIII GGCC 1 cut(s) 1253
HapII CCGG 3 cut(s) 1262, 1500, 1643
Hin1II CATG 8 cut(s) 31, 122, 326, 413, 625, 811, 959, 1598
HincII GTYRAC 1 cut(s) 1333
HindII GTYRAC 1 cut(s) 1333
HindIII AAGCTT 2 cut(s) 1468, 1831
HpaI GTTAAC 1 cut(s) 1333
HpaII CCGG 3 cut(s) 1262, 1500, 1643
HphI GGTGA 1 cut(s) 1901
Hpy166II GTNNAC 4 cut(s) 507, 694, 1333, 1868
Hpy188I TCNGA 9 cut(s) 169, 289, 420, 534, 568, 757, 847, 1638, 1827
Hpy8I GTNNAC 4 cut(s) 507, 694, 1333, 1868
HpyCH4III ACNGT 1 cut(s) 1145
HpyCH4IV ACGT 1 cut(s) 1620
HpyF10VI GCNNNNNNNGC 3 cut(s) 301, 310, 387
HpyF3I CTNAG 6 cut(s) 273, 417, 1218, 1356, 1538, 1850
HpySE526I ACGT 1 cut(s) 1620
Hsp92II CATG 8 cut(s) 31, 122, 326, 413, 625, 811, 959, 1598
KspAI GTTAAC 1 cut(s) 1333
Kzo9I GATC 8 cut(s) 529, 556, 717, 1339, 1408, 1483, 1579, 1651
LguI GCTCTTC 1 cut(s) 439
LmnI GCTCC 5 cut(s) 205, 568, 1363, 1534, 1638
Lsp1109I GCAGC 4 cut(s) 58, 300, 374, 425
MaeI CTAG 4 cut(s) 585, 1305, 1311, 1647
MaeII ACGT 1 cut(s) 1620
MaeIII GTNAC 6 cut(s) 14, 551, 664, 1223, 1553, 1889
MalI GATC 8 cut(s) 531, 558, 719, 1341, 1410, 1485, 1581, 1653
MboI GATC 8 cut(s) 529, 556, 717, 1339, 1408, 1483, 1579, 1651
MfeI CAATTG 3 cut(s) 359, 861, 960
MflI RGATCY 2 cut(s) 529, 1408
MhlI GDGCHC 4 cut(s) 434, 755, 1544, 1643
MlyI GAGTC 4 cut(s) 70, 131, 923, 1220
Mph1103I ATGCAT 1 cut(s) 251
MroXI GAANNNNTTC 4 cut(s) 518, 852, 972, 1188
MseI TTAA 3 cut(s) 146, 1332, 1559
MspI CCGG 3 cut(s) 1262, 1500, 1643
MspR9I CCNGG 6 cut(s) 310, 895, 1262, 1501, 1604, 1643
MunI CAATTG 3 cut(s) 359, 861, 960
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 3 cut(s) 310, 895, 1604
MvnI CGCG 1 cut(s) 1566
MwoI GCNNNNNNNGC 3 cut(s) 301, 310, 387
NciI CCSGG 3 cut(s) 1262, 1501, 1643
NdeII GATC 8 cut(s) 529, 556, 717, 1339, 1408, 1483, 1579, 1651
NlaIII CATG 8 cut(s) 31, 122, 326, 413, 625, 811, 959, 1598
NlaIV GGNNCC 6 cut(s) 35, 328, 650, 672, 1601, 1640
NmuCI GTSAC 5 cut(s) 551, 664, 1223, 1553, 1889
NruI TCGCGA 1 cut(s) 1566
NsiI ATGCAT 1 cut(s) 251
NspI RCATGY 3 cut(s) 413, 811, 959
PciI ACATGT 1 cut(s) 807
PciSI GCTCTTC 1 cut(s) 439
PcsI WCGNNNNNNNCGW 1 cut(s) 1515
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 4 cut(s) 518, 852, 972, 1188
PfoI TCCNGGA 1 cut(s) 1602
PkrI GCNGC 4 cut(s) 48, 315, 389, 415
PleI GAGTC 4 cut(s) 69, 131, 923, 1220
PpsI GAGTC 4 cut(s) 69, 131, 923, 1220
PscI ACATGT 1 cut(s) 807
PshBI ATTAAT 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 434
Psp6I CCWGG 3 cut(s) 308, 893, 1602
PspGI CCWGG 3 cut(s) 308, 893, 1602
PspN4I GGNNCC 6 cut(s) 35, 328, 650, 672, 1601, 1640
PspPI GGNCC 1 cut(s) 649
PstI CTGCAG 1 cut(s) 392
PsuI RGATCY 2 cut(s) 529, 1408
RruI TCGCGA 1 cut(s) 1566
RsaI GTAC 2 cut(s) 446, 1259
RsaNI GTAC 2 cut(s) 445, 1258
SacI GAGCTC 1 cut(s) 434
SapI GCTCTTC 1 cut(s) 439
SaqAI TTAA 3 cut(s) 146, 1332, 1559
SatI GCNGC 4 cut(s) 47, 314, 388, 414
Sau3AI GATC 8 cut(s) 529, 556, 717, 1339, 1408, 1483, 1579, 1651
Sau96I GGNCC 1 cut(s) 649
SchI GAGTC 4 cut(s) 70, 131, 923, 1220
ScrFI CCNGG 6 cut(s) 310, 895, 1262, 1501, 1604, 1643
SduI GDGCHC 4 cut(s) 434, 755, 1544, 1643
SfcI CTRYAG 1 cut(s) 388
SinI GGWCC 1 cut(s) 649
SmlI CTYRAG 5 cut(s) 56, 139, 427, 1456, 1834
SmoI CTYRAG 5 cut(s) 56, 139, 427, 1456, 1834
SsiI CCGC 3 cut(s) 337, 1841, 1854
SspI AATATT 1 cut(s) 192
SspMI CTAG 4 cut(s) 585, 1305, 1311, 1647
SstI GAGCTC 1 cut(s) 434
StyD4I CCNGG 6 cut(s) 308, 893, 1260, 1499, 1602, 1641
StyI CCWWGG 3 cut(s) 400, 497, 836
TaaI ACNGT 1 cut(s) 1145
TaiI ACGT 1 cut(s) 1623
TaqII GACCGA 1 cut(s) 539
Tru1I TTAA 3 cut(s) 146, 1332, 1559
Tru9I TTAA 3 cut(s) 146, 1332, 1559
TscAI CASTG 3 cut(s) 133, 703, 787
TseFI GTSAC 5 cut(s) 551, 664, 1223, 1553, 1889
TseI GCWGC 4 cut(s) 46, 313, 387, 413
Tsp45I GTSAC 5 cut(s) 551, 664, 1223, 1553, 1889
TspDTI ATGAA 8 cut(s) 107, 276, 363, 1035, 1046, 1198, 1527, 1955
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 3 cut(s) 133, 703, 787
VpaK11BI GGWCC 1 cut(s) 649
VspI ATTAAT 1 cut(s) 146
XapI RAATTY 3 cut(s) 535, 1130, 1160
XceI RCATGY 3 cut(s) 413, 811, 959
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
XmiI GTMKAC 2 cut(s) 506, 1867
XmnI GAANNNNTTC 4 cut(s) 518, 852, 972, 1188
XspI CTAG 4 cut(s) 585, 1305, 1311, 1647
Zsp2I ATGCAT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.