vascular transport
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G29920 AT4G29920 |
| fragaria_vesca | FvH4_4g07050 FvH4_4g07050 |
| malus_domestica | MD00G1086800.v1.1 MD16G1247100.v1.1 |
| prunus_persica | Prupe.1G073700_v2.0.a1 |
| pyrus_communis | pycom13g21290 pycom16g20740 |
| rosa_chinensis | RchiOBHm_Chr4g0399171 |
| rosa_laevigata | RLG00000009293 |
| rosa_multiflora | Rmu_sc0002062.1_g000001 Rmu_sc0006088.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00344130 |
| rosa_rugosa | Rorug04G0014600 |
| rosa_samantha | Rh4AG092500 Rh4BG090500 Rh4CG101000 Rh4DG084900 |
| rosa_wichuraiana | Rw4G007620 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 647 |
| AccB1I | GGYRCC | 1 cut(s) | 33 |
| AccI | GTMKAC | 2 cut(s) | 506, 1867 |
| AccII | CGCG | 1 cut(s) | 1566 |
| AciI | CCGC | 3 cut(s) | 337, 1841, 1854 |
| AclWI | GGATC | 3 cut(s) | 524, 551, 1403 |
| AcsI | RAATTY | 3 cut(s) | 535, 1130, 1160 |
| AcuI | CTGAAG | 3 cut(s) | 471, 720, 734 |
| AfaI | GTAC | 2 cut(s) | 446, 1259 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 98, 343, 1596 |
| AflIII | ACRYGT | 1 cut(s) | 807 |
| AjnI | CCWGG | 3 cut(s) | 308, 893, 1602 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 503, 535, 667, 699, 960, 992, 1680, 1712 |
| Alw21I | GWGCWC | 1 cut(s) | 434 |
| Alw26I | GTCTC | 3 cut(s) | 113, 601, 896 |
| AlwI | GGATC | 3 cut(s) | 524, 551, 1403 |
| Ama87I | CYCGRG | 1 cut(s) | 1036 |
| AoxI | GGCC | 1 cut(s) | 1251 |
| ApeKI | GCWGC | 4 cut(s) | 46, 313, 387, 413 |
| ApoI | RAATTY | 3 cut(s) | 535, 1130, 1160 |
| AseI | ATTAAT | 1 cut(s) | 146 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 518, 852, 972, 1188 |
| AspS9I | GGNCC | 1 cut(s) | 649 |
| AsuC2I | CCSGG | 3 cut(s) | 1262, 1501, 1643 |
| AsuHPI | GGTGA | 1 cut(s) | 1901 |
| AvaI | CYCGRG | 1 cut(s) | 1036 |
| AvaII | GGWCC | 1 cut(s) | 649 |
| BanI | GGYRCC | 1 cut(s) | 33 |
| BanII | GRGCYC | 4 cut(s) | 434, 755, 1544, 1643 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1241, 1273 |
| BbsI | GAAGAC | 5 cut(s) | 65, 412, 1444, 1527, 1925 |
| Bbv12I | GWGCWC | 1 cut(s) | 434 |
| BbvI | GCAGC | 4 cut(s) | 58, 300, 374, 425 |
| BccI | CCATC | 2 cut(s) | 172, 1895 |
| BceAI | ACGGC | 1 cut(s) | 595 |
| BciT130I | CCWGG | 3 cut(s) | 310, 895, 1604 |
| BcnI | CCSGG | 3 cut(s) | 1262, 1501, 1643 |
| BcoDI | GTCTC | 3 cut(s) | 113, 601, 896 |
| BfaI | CTAG | 4 cut(s) | 585, 1305, 1311, 1647 |
| BfmI | CTRYAG | 1 cut(s) | 388 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 310 |
| BisI | GCNGC | 4 cut(s) | 47, 314, 388, 414 |
| BlpI | GCTNAGC | 1 cut(s) | 1538 |
| BlsI | GCNGC | 4 cut(s) | 48, 315, 389, 415 |
| Bme1390I | CCNGG | 6 cut(s) | 310, 895, 1262, 1501, 1604, 1643 |
| Bme18I | GGWCC | 1 cut(s) | 649 |
| BmeT110I | CYCGRG | 1 cut(s) | 1036 |
| BmgT120I | GGNCC | 1 cut(s) | 649 |
| BmiI | GGNNCC | 6 cut(s) | 35, 328, 650, 672, 1601, 1640 |
| BmrFI | CCNGG | 6 cut(s) | 310, 895, 1262, 1501, 1604, 1643 |
| BmrI | ACTGGG | 1 cut(s) | 1114 |
| BmuI | ACTGGG | 1 cut(s) | 1114 |
| BpiI | GAAGAC | 5 cut(s) | 65, 412, 1444, 1527, 1925 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1439, 1471 |
| BpmI | CTGGAG | 1 cut(s) | 510 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1538 |
| BpuEI | CTTGAG | 5 cut(s) | 77, 124, 448, 1441, 1855 |
| BpuMI | CCSGG | 3 cut(s) | 1262, 1501, 1643 |
| Bsa29I | ATCGAT | 1 cut(s) | 1610 |
| BsaI | GGTCTC | 1 cut(s) | 113 |
| BsaJI | CCNNGG | 4 cut(s) | 400, 497, 836, 1500 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 893, 923 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 98, 343, 1596 |
| Bse1I | ACTGG | 1 cut(s) | 1120 |
| BseBI | CCWGG | 3 cut(s) | 310, 895, 1604 |
| BseCI | ATCGAT | 1 cut(s) | 1610 |
| BseDI | CCNNGG | 4 cut(s) | 400, 497, 836, 1500 |
| BseGI | GGATG | 1 cut(s) | 352 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 98, 343, 1596 |
| BseMII | CTCAG | 4 cut(s) | 287, 431, 1347, 1529 |
| BseNI | ACTGG | 1 cut(s) | 1120 |
| BseRI | GAGGAG | 1 cut(s) | 986 |
| BseXI | GCAGC | 4 cut(s) | 58, 300, 374, 425 |
| BsgI | GTGCAG | 1 cut(s) | 380 |
| Bsh1236I | CGCG | 1 cut(s) | 1566 |
| BshFI | GGCC | 1 cut(s) | 1253 |
| BshNI | GGYRCC | 1 cut(s) | 33 |
| BshVI | ATCGAT | 1 cut(s) | 1610 |
| BsiHKAI | GWGCWC | 1 cut(s) | 434 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1036 |
| BsiSI | CCGG | 3 cut(s) | 1262, 1500, 1643 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 98, 343, 1596 |
| BsmAI | GTCTC | 3 cut(s) | 113, 601, 896 |
| BsmI | GAATGC | 1 cut(s) | 251 |
| BsnI | GGCC | 1 cut(s) | 1253 |
| Bso31I | GGTCTC | 1 cut(s) | 113 |
| BsoBI | CYCGRG | 1 cut(s) | 1036 |
| Bsp1286I | GDGCHC | 4 cut(s) | 434, 755, 1544, 1643 |
| Bsp143I | GATC | 8 cut(s) | 529, 556, 717, 1339, 1408, 1483, 1579, 1651 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1538 |
| Bsp68I | TCGCGA | 1 cut(s) | 1566 |
| BspACI | CCGC | 3 cut(s) | 337, 1841, 1854 |
| BspANI | GGCC | 1 cut(s) | 1253 |
| BspCNI | CTCAG | 4 cut(s) | 286, 430, 1348, 1530 |
| BspDI | ATCGAT | 1 cut(s) | 1610 |
| BspFNI | CGCG | 1 cut(s) | 1566 |
| BspLI | GGNNCC | 6 cut(s) | 35, 328, 650, 672, 1601, 1640 |
| BspMAI | CTGCAG | 1 cut(s) | 392 |
| BspPI | GGATC | 3 cut(s) | 524, 551, 1403 |
| BspQI | GCTCTTC | 1 cut(s) | 439 |
| BspT107I | GGYRCC | 1 cut(s) | 33 |
| BspTNI | GGTCTC | 1 cut(s) | 113 |
| BsrI | ACTGG | 1 cut(s) | 1120 |
| BssECI | CCNNGG | 4 cut(s) | 400, 497, 836, 1500 |
| BssMI | GATC | 8 cut(s) | 529, 556, 717, 1339, 1408, 1483, 1579, 1651 |
| BssNAI | GTATAC | 1 cut(s) | 1868 |
| BssT1I | CCWWGG | 3 cut(s) | 400, 497, 836 |
| Bst1107I | GTATAC | 1 cut(s) | 1868 |
| Bst2UI | CCWGG | 3 cut(s) | 310, 895, 1604 |
| Bst4CI | ACNGT | 1 cut(s) | 1145 |
| Bst6I | CTCTTC | 2 cut(s) | 439, 1239 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 301 |
| BstC8I | GCNNGC | 6 cut(s) | 124, 306, 337, 573, 815, 951 |
| BstDEI | CTNAG | 6 cut(s) | 273, 417, 1218, 1356, 1538, 1850 |
| BstF5I | GGATG | 1 cut(s) | 352 |
| BstFNI | CGCG | 1 cut(s) | 1566 |
| BstKTI | GATC | 8 cut(s) | 532, 559, 720, 1342, 1411, 1486, 1582, 1654 |
| BstMAI | GTCTC | 3 cut(s) | 113, 601, 896 |
| BstMBI | GATC | 8 cut(s) | 529, 556, 717, 1339, 1408, 1483, 1579, 1651 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 301, 310, 387 |
| BstNI | CCWGG | 3 cut(s) | 310, 895, 1604 |
| BstNSI | RCATGY | 3 cut(s) | 413, 811, 959 |
| BstSCI | CCNGG | 6 cut(s) | 308, 893, 1260, 1499, 1602, 1641 |
| BstSFI | CTRYAG | 1 cut(s) | 388 |
| BstUI | CGCG | 1 cut(s) | 1566 |
| BstV1I | GCAGC | 4 cut(s) | 58, 300, 374, 425 |
| BstV2I | GAAGAC | 5 cut(s) | 65, 412, 1444, 1527, 1925 |
| BstX2I | RGATCY | 2 cut(s) | 529, 1408 |
| BstYI | RGATCY | 2 cut(s) | 529, 1408 |
| BstZ17I | GTATAC | 1 cut(s) | 1868 |
| Bsu15I | ATCGAT | 1 cut(s) | 1610 |
| BsuRI | GGCC | 1 cut(s) | 1253 |
| BsuTUI | ATCGAT | 1 cut(s) | 1610 |
| BtsCI | GGATG | 1 cut(s) | 352 |
| BtsI | GCAGTG | 1 cut(s) | 133 |
| BtsIMutI | CAGTG | 3 cut(s) | 133, 696, 780 |
| BtuMI | TCGCGA | 1 cut(s) | 1566 |
| Cac8I | GCNNGC | 6 cut(s) | 124, 306, 337, 573, 815, 951 |
| Cfr13I | GGNCC | 1 cut(s) | 649 |
| ClaI | ATCGAT | 1 cut(s) | 1610 |
| Csp6I | GTAC | 2 cut(s) | 445, 1258 |
| CviAII | CATG | 8 cut(s) | 28, 119, 323, 410, 622, 808, 956, 1595 |
| CviQI | GTAC | 2 cut(s) | 445, 1258 |
| DdeI | CTNAG | 6 cut(s) | 273, 417, 1218, 1356, 1538, 1850 |
| DpnI | GATC | 8 cut(s) | 531, 558, 719, 1341, 1410, 1485, 1581, 1653 |
| DpnII | GATC | 8 cut(s) | 529, 556, 717, 1339, 1408, 1483, 1579, 1651 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 647 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 647 |
| Eam1104I | CTCTTC | 2 cut(s) | 439, 1239 |
| EarI | CTCTTC | 2 cut(s) | 439, 1239 |
| Ecl136II | GAGCTC | 1 cut(s) | 432 |
| Eco130I | CCWWGG | 3 cut(s) | 400, 497, 836 |
| Eco24I | GRGCYC | 4 cut(s) | 434, 755, 1544, 1643 |
| Eco31I | GGTCTC | 1 cut(s) | 113 |
| Eco47I | GGWCC | 1 cut(s) | 649 |
| Eco53kI | GAGCTC | 1 cut(s) | 432 |
| Eco57I | CTGAAG | 3 cut(s) | 471, 720, 734 |
| Eco88I | CYCGRG | 1 cut(s) | 1036 |
| EcoICRI | GAGCTC | 1 cut(s) | 432 |
| EcoRI | GAATTC | 1 cut(s) | 535 |
| EcoRII | CCWGG | 3 cut(s) | 308, 893, 1602 |
| EcoT14I | CCWWGG | 3 cut(s) | 400, 497, 836 |
| EcoT22I | ATGCAT | 1 cut(s) | 251 |
| EcoT38I | GRGCYC | 4 cut(s) | 434, 755, 1544, 1643 |
| ErhI | CCWWGG | 3 cut(s) | 400, 497, 836 |
| FaeI | CATG | 8 cut(s) | 31, 122, 326, 413, 625, 811, 959, 1598 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 503, 535, 1436, 1468 |
| FatI | CATG | 8 cut(s) | 27, 118, 322, 409, 621, 807, 955, 1594 |
| FauI | CCCGC | 2 cut(s) | 344, 1847 |
| FblI | GTMKAC | 2 cut(s) | 506, 1867 |
| Fnu4HI | GCNGC | 4 cut(s) | 47, 314, 388, 414 |
| FokI | GGATG | 1 cut(s) | 359 |
| FriOI | GRGCYC | 4 cut(s) | 434, 755, 1544, 1643 |
| Fsp4HI | GCNGC | 4 cut(s) | 47, 314, 388, 414 |
| FspBI | CTAG | 4 cut(s) | 585, 1305, 1311, 1647 |
| GluI | GCNGC | 4 cut(s) | 47, 314, 388, 414 |
| GsuI | CTGGAG | 1 cut(s) | 510 |
| HaeIII | GGCC | 1 cut(s) | 1253 |
| HapII | CCGG | 3 cut(s) | 1262, 1500, 1643 |
| Hin1II | CATG | 8 cut(s) | 31, 122, 326, 413, 625, 811, 959, 1598 |
| HincII | GTYRAC | 1 cut(s) | 1333 |
| HindII | GTYRAC | 1 cut(s) | 1333 |
| HindIII | AAGCTT | 2 cut(s) | 1468, 1831 |
| HpaI | GTTAAC | 1 cut(s) | 1333 |
| HpaII | CCGG | 3 cut(s) | 1262, 1500, 1643 |
| HphI | GGTGA | 1 cut(s) | 1901 |
| Hpy166II | GTNNAC | 4 cut(s) | 507, 694, 1333, 1868 |
| Hpy188I | TCNGA | 9 cut(s) | 169, 289, 420, 534, 568, 757, 847, 1638, 1827 |
| Hpy8I | GTNNAC | 4 cut(s) | 507, 694, 1333, 1868 |
| HpyCH4III | ACNGT | 1 cut(s) | 1145 |
| HpyCH4IV | ACGT | 1 cut(s) | 1620 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 301, 310, 387 |
| HpyF3I | CTNAG | 6 cut(s) | 273, 417, 1218, 1356, 1538, 1850 |
| HpySE526I | ACGT | 1 cut(s) | 1620 |
| Hsp92II | CATG | 8 cut(s) | 31, 122, 326, 413, 625, 811, 959, 1598 |
| KspAI | GTTAAC | 1 cut(s) | 1333 |
| Kzo9I | GATC | 8 cut(s) | 529, 556, 717, 1339, 1408, 1483, 1579, 1651 |
| LguI | GCTCTTC | 1 cut(s) | 439 |
| LmnI | GCTCC | 5 cut(s) | 205, 568, 1363, 1534, 1638 |
| Lsp1109I | GCAGC | 4 cut(s) | 58, 300, 374, 425 |
| MaeI | CTAG | 4 cut(s) | 585, 1305, 1311, 1647 |
| MaeII | ACGT | 1 cut(s) | 1620 |
| MaeIII | GTNAC | 6 cut(s) | 14, 551, 664, 1223, 1553, 1889 |
| MalI | GATC | 8 cut(s) | 531, 558, 719, 1341, 1410, 1485, 1581, 1653 |
| MboI | GATC | 8 cut(s) | 529, 556, 717, 1339, 1408, 1483, 1579, 1651 |
| MfeI | CAATTG | 3 cut(s) | 359, 861, 960 |
| MflI | RGATCY | 2 cut(s) | 529, 1408 |
| MhlI | GDGCHC | 4 cut(s) | 434, 755, 1544, 1643 |
| MlyI | GAGTC | 4 cut(s) | 70, 131, 923, 1220 |
| Mph1103I | ATGCAT | 1 cut(s) | 251 |
| MroXI | GAANNNNTTC | 4 cut(s) | 518, 852, 972, 1188 |
| MseI | TTAA | 3 cut(s) | 146, 1332, 1559 |
| MspI | CCGG | 3 cut(s) | 1262, 1500, 1643 |
| MspR9I | CCNGG | 6 cut(s) | 310, 895, 1262, 1501, 1604, 1643 |
| MunI | CAATTG | 3 cut(s) | 359, 861, 960 |
| Mva1269I | GAATGC | 1 cut(s) | 251 |
| MvaI | CCWGG | 3 cut(s) | 310, 895, 1604 |
| MvnI | CGCG | 1 cut(s) | 1566 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 301, 310, 387 |
| NciI | CCSGG | 3 cut(s) | 1262, 1501, 1643 |
| NdeII | GATC | 8 cut(s) | 529, 556, 717, 1339, 1408, 1483, 1579, 1651 |
| NlaIII | CATG | 8 cut(s) | 31, 122, 326, 413, 625, 811, 959, 1598 |
| NlaIV | GGNNCC | 6 cut(s) | 35, 328, 650, 672, 1601, 1640 |
| NmuCI | GTSAC | 5 cut(s) | 551, 664, 1223, 1553, 1889 |
| NruI | TCGCGA | 1 cut(s) | 1566 |
| NsiI | ATGCAT | 1 cut(s) | 251 |
| NspI | RCATGY | 3 cut(s) | 413, 811, 959 |
| PciI | ACATGT | 1 cut(s) | 807 |
| PciSI | GCTCTTC | 1 cut(s) | 439 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1515 |
| PctI | GAATGC | 1 cut(s) | 251 |
| PdmI | GAANNNNTTC | 4 cut(s) | 518, 852, 972, 1188 |
| PfoI | TCCNGGA | 1 cut(s) | 1602 |
| PkrI | GCNGC | 4 cut(s) | 48, 315, 389, 415 |
| PleI | GAGTC | 4 cut(s) | 69, 131, 923, 1220 |
| PpsI | GAGTC | 4 cut(s) | 69, 131, 923, 1220 |
| PscI | ACATGT | 1 cut(s) | 807 |
| PshBI | ATTAAT | 1 cut(s) | 146 |
| Psp124BI | GAGCTC | 1 cut(s) | 434 |
| Psp6I | CCWGG | 3 cut(s) | 308, 893, 1602 |
| PspGI | CCWGG | 3 cut(s) | 308, 893, 1602 |
| PspN4I | GGNNCC | 6 cut(s) | 35, 328, 650, 672, 1601, 1640 |
| PspPI | GGNCC | 1 cut(s) | 649 |
| PstI | CTGCAG | 1 cut(s) | 392 |
| PsuI | RGATCY | 2 cut(s) | 529, 1408 |
| RruI | TCGCGA | 1 cut(s) | 1566 |
| RsaI | GTAC | 2 cut(s) | 446, 1259 |
| RsaNI | GTAC | 2 cut(s) | 445, 1258 |
| SacI | GAGCTC | 1 cut(s) | 434 |
| SapI | GCTCTTC | 1 cut(s) | 439 |
| SaqAI | TTAA | 3 cut(s) | 146, 1332, 1559 |
| SatI | GCNGC | 4 cut(s) | 47, 314, 388, 414 |
| Sau3AI | GATC | 8 cut(s) | 529, 556, 717, 1339, 1408, 1483, 1579, 1651 |
| Sau96I | GGNCC | 1 cut(s) | 649 |
| SchI | GAGTC | 4 cut(s) | 70, 131, 923, 1220 |
| ScrFI | CCNGG | 6 cut(s) | 310, 895, 1262, 1501, 1604, 1643 |
| SduI | GDGCHC | 4 cut(s) | 434, 755, 1544, 1643 |
| SfcI | CTRYAG | 1 cut(s) | 388 |
| SinI | GGWCC | 1 cut(s) | 649 |
| SmlI | CTYRAG | 5 cut(s) | 56, 139, 427, 1456, 1834 |
| SmoI | CTYRAG | 5 cut(s) | 56, 139, 427, 1456, 1834 |
| SsiI | CCGC | 3 cut(s) | 337, 1841, 1854 |
| SspI | AATATT | 1 cut(s) | 192 |
| SspMI | CTAG | 4 cut(s) | 585, 1305, 1311, 1647 |
| SstI | GAGCTC | 1 cut(s) | 434 |
| StyD4I | CCNGG | 6 cut(s) | 308, 893, 1260, 1499, 1602, 1641 |
| StyI | CCWWGG | 3 cut(s) | 400, 497, 836 |
| TaaI | ACNGT | 1 cut(s) | 1145 |
| TaiI | ACGT | 1 cut(s) | 1623 |
| TaqII | GACCGA | 1 cut(s) | 539 |
| Tru1I | TTAA | 3 cut(s) | 146, 1332, 1559 |
| Tru9I | TTAA | 3 cut(s) | 146, 1332, 1559 |
| TscAI | CASTG | 3 cut(s) | 133, 703, 787 |
| TseFI | GTSAC | 5 cut(s) | 551, 664, 1223, 1553, 1889 |
| TseI | GCWGC | 4 cut(s) | 46, 313, 387, 413 |
| Tsp45I | GTSAC | 5 cut(s) | 551, 664, 1223, 1553, 1889 |
| TspDTI | ATGAA | 8 cut(s) | 107, 276, 363, 1035, 1046, 1198, 1527, 1955 |
| TspGWI | ACGGA | 1 cut(s) | 683 |
| TspRI | CASTG | 3 cut(s) | 133, 703, 787 |
| VpaK11BI | GGWCC | 1 cut(s) | 649 |
| VspI | ATTAAT | 1 cut(s) | 146 |
| XapI | RAATTY | 3 cut(s) | 535, 1130, 1160 |
| XceI | RCATGY | 3 cut(s) | 413, 811, 959 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1210 |
| XmiI | GTMKAC | 2 cut(s) | 506, 1867 |
| XmnI | GAANNNNTTC | 4 cut(s) | 518, 852, 972, 1188 |
| XspI | CTAG | 4 cut(s) | 585, 1305, 1311, 1647 |
| Zsp2I | ATGCAT | 1 cut(s) | 251 |