Rroxscaffold_5G00344130

vascular transport

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0011356
Physical Location & Seq
Reverse (-)
14080887 .. 14085600
4714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344130.1

Sequence Viewer

Length: 3183 bp
ATGCGCTCAGGAGGTTGTGCGGTGCAGCAGACCCTCACAGCGGAGGCTGCTTCGGTTCTGAAGCACTCTCTCAGCTTAGCCAGGCGGAGAGGCCATGCTCAGGTCACTCCTCTCCACGTGGCCGCCACTCTCCTCGCCTCAAGAACCAGTCTCTTGAGGCGGGCCTGTCTCAAAGCTGCCGCAGCAGCCAACCACAACCCGCCACATCACCACCCTCTCCAATGCAGGGCCCTGGAGCTCTGCTTCAATGTGGCGCTTAACAGGCTCCCCACTACACCTCCCTCCGGAGGTGGCGGCGCCGCCAGTCCTCTGCTGGTCAACCACGGTCAGCACCACCAGCAGCAACAGCCTTCTCTCTCCAATGCTCTCATTGCAGCTCTCAAAAGGGCCCAAGCCCACCAGAGAAGGGGTTGCATAGAGCAGCAGAATCAGCAGCAGCCACTTTTGACGATCAAGGTTGAGCTTGAGCAGCTGATCATCTCCATCTTGGATGACCCAAGTGTTAGCAGGGTTATGAGGGAAGCCGGCTTCTCAAGTACTTCTGTCAAGAACAACTTAGAGGACACCTCCTCTGCTTCCTCTGTTTCCTCTGTTTTCCAGTGTTATAATAGCACTGGTGGGGTTTTCTCTTCTCCTTGTTCACCTACTGCTCCTGAAAACTTAACCCATCATCATATCAGTCCATCTGGGAATTTCTGGCAAACCCATTTCTTGACTTACACTTCTGAGCAAAACCCACTTCTCTTTTCTTCCCCACCAAAGAAATTACTTCTTCCATTCAATGTCAGCTCCATTAGTACTCCTACAGAGTCTCTCTCTTATTCCAAGGAAGATGTTAAGTTGGTGTTTGAGGTATTGGTGAGGAAGAACAGCAAGAAAAGGAACACTGTGATTGTGGGTGACTCTGTGTCCATTACTGAAGGCCTTGTTGCTGAGGTCATGGGGAGGTTAGAGAGAGGATCGGAGGTTCCCGAGGAACTGAAATCAACCCATTTCATCAAATTTCAGTTTCCACATGTTTCTTTGAGGTACATGAAAAGAGAAGATGTGGAATCAAATATCACAGAGCTCAAAAGGAAATTGGATCACTCTGGAGGAGGTGGTGCTATTATTTACATTGGAGACTTGAAATGGACAATTGGTGATGAGAGAGAAGGAGGATTAGTCTCTGGTGGGTATAGCCCAGTTGAGCATTTAGTTTCAGAAATTTCAAGGTTGGTTTCAGATTATGAAAGCAGCTCCTTCTCAAGCACAAAGCCAAAGGTGTGGCTAATGGCTACTGCTAGTTATCAAACATACATGAGATGCCAAATGAGGCAACCTTCTCTTGAGATTCAATGGGGTCTTCAAGCTGTTTCAGTACCATCAGGTGGTCTTGGTTTGAGTCTCCATGCTTCCAGTGTCCATGATTCGAGAGTAATCTTTTCTCAAAACCCATCTGAAGTGCTGGAAACAAAGCCATTCAGTAGCAGCAAGGATCATGAACAAGATCATAGTAAGCTCCCCTGCTGTGAAGAATGCACTTCTAATTATGAGAAAGAAGCTCAGTTGCTCAAATCTGGCCAGCAGAAATTGCCTGCCTGGCTTCAACCACAGGGCACCCAAGCCTGTCAAAAGGATGAAGTGGTTGAATTGAGGAGAAAGTGGAACAGGTTATGCAACAGTCTGCACCAACGAAGGCATAATCAGAATCATTCAAGCCCCGCTTTGTACAACCATCAAAACTCAATTGGGAAGAACCACTCTTATAGTACTTCATCGTACCCTTGGTTGTCAACCAGGAATGGCATCTTCCCAGATCTGAATTCGATCTCTTTTGCTGATCATCCAGCTTCAGACCCTGCAACCCATGGCTCTAATCTGGTGCCTCGGTTCAGGAGACAACAATCATGTAGTACAATCGAATTCAATTTTGATAATGGGGTTCAAAAGCAGGAAGTAGTGGAACCAACATTGGATTCTTTGAAACTCAGTGAAGATAAGGAAGTGAAGATCACACTTGCTCTCGGCAACTCTGTGTTTTCTGATTCAGGAAAATCGATGGTGCAGAGAGCTGACATGTGTAAGCTTTTGAAAGAGAATGTGCCTTGGCAATCTGAATCCATTCCCTCAATAGTAGAAGCCATAATCGGCTCCAAACCATGTTCGGAAACTTGGTTTCTGATTGATGGGAATGACTCGATTGGAAAGAGAAGGTTGGCTCAAGCAATAGCAGAGTTGGTTCTGGGATCTGCTAATTCACTCTTACATATCAACATGAACAAAAGAGAAGATGAGATGTACCCAAGAGTGGAAAAACTAAAAAAAGCCTTGAAATCCAGTGACAAACTTGTTGTGTTGGTAGAAGATGTTGATTTGGCTGATACCCAGTTCTTAAAATTCCTAGCTGATCGAAAATGTGGAGAAGTGAGTAGAAGAGATGGGAATCAAGGCCAAGCAATATTCATTTTGACCAAGGGTGAGTCCCCAAGAAATGAGTACCCAGGTTCTATAATCCAAATGAAGTTGAAAGTTGATGAAAAAAGTACTAGTCCTAGTTTTGGGATCGCCAGCTTCGAACACAAGCGAAAAGCTGAGTGGGAGCTTGAAAACAAGACCAAATCTACAAGATTTGAAGAAAAGGAGGATTCAAGTATGGTTGTTGCCTTTGAGAATGTGAATAGCAAGAAGGACTTCTCAAGGCAATCAAGCTTCAACAGTAACCTTGATCTGAACCTCAAAGCCGGTGAGGACAATGAAATCGAAGACAATGCGGGGGAGGTTAGCCCTATTTCAAGTGATTTGACCCGCGACTCTGCCACGGATGTCCAAACCCCACTTGGGTTCCTCGAATCAGTCGAGAACCTCTTCGTTTTCAAGCGAAGCCCAGCTAGAGATCGGGAGGCCACCGAGCTTTTCTTGTCCAAGATTGAAGGGTGCTTTGAGGGTGTATATGGGAAACAAAATGGGGTTAGTTTTAGTGTGGATAAGAGGGTGTTAGAAGAGATATCTGTTGGGTCTGGTTCTTTTCCCAATAGCTTGTTTGAGAAATGGCTAAAAGGTATTTTTCAAACAAGCCTAAAATCGGTTAAATTTGGCGGGAAGGAGGGTATACTTGTAAGGCTATGTTTGGGGGGTACAGAAGAAGGCATTTTGGAGGGTTTCTTGGGCTCTTGTCTTCCCAAGAAAATCCAAATTTCTTGA

Protein Analysis

1060

Amino Acids

117.24

Weight (kDa)

7.58

Isoelectric Point (pI)

50.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NBD_SMAX1 PF23569 275 - 467 1.2e-80 SMAX1 nucleotide binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011356)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29920 AT4G29920
fragaria_vesca FvH4_4g07050 FvH4_4g07050
malus_domestica MD00G1086800.v1.1 MD16G1247100.v1.1
prunus_persica Prupe.1G073700_v2.0.a1
pyrus_communis pycom13g21290 pycom16g20740
rosa_chinensis RchiOBHm_Chr4g0399171
rosa_laevigata RLG00000009293
rosa_multiflora Rmu_sc0002062.1_g000001 Rmu_sc0006088.1_g000002
rosa_roxburghii Rroxscaffold_5G00344130
rosa_rugosa Rorug04G0014600
rosa_samantha Rh4AG092500 Rh4BG090500 Rh4CG101000 Rh4DG084900
rosa_wichuraiana Rw4G007620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AccB1I GGYRCC 3 cut(s) 296, 1598, 1864
AccB7I CCANNNNNTGG 1 cut(s) 1370
AccI GTMKAC 1 cut(s) 3091
AccII CGCG 1 cut(s) 2790
AccIII TCCGGA 1 cut(s) 284
AclWI GGATC 5 cut(s) 967, 1092, 1485, 2236, 2552
AcoI YGGCCR 2 cut(s) 120, 1561
AcsI RAATTY 8 cut(s) 691, 1001, 1206, 1804, 1904, 2378, 3071, 3174
AcuI CTGAAG 4 cut(s) 80, 939, 1461, 1818
AcvI CACGTG 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 297
AflIII ACRYGT 2 cut(s) 1015, 2058
AhdI GACNNNNNGTC 1 cut(s) 907
AhlI ACTAGT 1 cut(s) 2528
AjnI CCWGG 5 cut(s) 80, 231, 1580, 1778, 2482
AjuI GAANNNNNNNTTGG 2 cut(s) 1942, 1974
AloI GAACNNNNNNTCC 2 cut(s) 951, 983
Alw21I GWGCWC 2 cut(s) 240, 1071
Alw26I GTCTC 7 cut(s) 155, 173, 816, 1116, 1171, 1391, 1873
AlwI GGATC 5 cut(s) 967, 1092, 1485, 2236, 2552
AlwNI CAGNNNCTG 1 cut(s) 1841
Ama87I CYCGRG 1 cut(s) 971
Aor13HI TCCGGA 1 cut(s) 284
AoxI GGCC 9 cut(s) 91, 120, 162, 228, 387, 922, 1561, 2431, 2883
ApaI GGGCCC 2 cut(s) 232, 391
ApoI RAATTY 8 cut(s) 691, 1001, 1206, 1804, 1904, 2378, 3071, 3174
Asp700I GAANNNNTTC 3 cut(s) 2103, 2672, 2846
AspLEI GCGC 3 cut(s) 6, 256, 299
AspS9I GGNCC 5 cut(s) 162, 228, 229, 387, 388
AsuHPI GGTGA 7 cut(s) 200, 633, 871, 911, 1154, 2471, 2738
AsuII TTCGAA 1 cut(s) 2556
AvaI CYCGRG 1 cut(s) 971
BaeGI GKGCMC 3 cut(s) 232, 391, 1601
BalI TGGCCA 1 cut(s) 1563
BanI GGYRCC 3 cut(s) 296, 1598, 1864
BanII GRGCYC 5 cut(s) 232, 240, 391, 1071, 3152
BbrPI CACGTG 1 cut(s) 118
BbsI GAAGAC 3 cut(s) 1337, 2751, 3149
Bbv12I GWGCWC 2 cut(s) 240, 1071
BbvCI CCTCAGC 1 cut(s) 933
BccI CCATC 9 cut(s) 491, 675, 691, 1372, 1444, 1725, 2035, 2162, 2414
BcgI CGANNNNNNTGC 2 cut(s) 2732, 2766
BciT130I CCWGG 5 cut(s) 82, 233, 1582, 1780, 2484
BclI TGATCA 2 cut(s) 474, 1822
BcoDI GTCTC 7 cut(s) 155, 173, 816, 1116, 1171, 1391, 1873
BcuI ACTAGT 1 cut(s) 2528
BfaI CTAG 5 cut(s) 1284, 2384, 2529, 2535, 2871
BfmI CTRYAG 1 cut(s) 804
BfoI RGCGCY 2 cut(s) 257, 300
BglI GCCNNNNNGGC 1 cut(s) 1582
BglII AGATCT 1 cut(s) 1798
BlpI GCTNAGC 1 cut(s) 76
BmcAI AGTACT 4 cut(s) 538, 799, 1753, 2527
Bme1390I CCNGG 5 cut(s) 82, 233, 1582, 1780, 2484
BmeRI GACNNNNNGTC 1 cut(s) 907
BmeT110I CYCGRG 1 cut(s) 971
BmgT120I GGNCC 5 cut(s) 162, 228, 229, 387, 388
BmrFI CCNGG 5 cut(s) 82, 233, 1582, 1780, 2484
BmrI ACTGGG 2 cut(s) 1178, 2362
BmsI GCATC 2 cut(s) 1295, 1797
BmuI ACTGGG 2 cut(s) 1178, 2362
BpiI GAAGAC 3 cut(s) 1337, 2751, 3149
BplI GAGNNNNNCTC 4 cut(s) 551, 583, 800, 832
BpmI CTGGAG 2 cut(s) 254, 1113
Bpu10I CCTNAGC 3 cut(s) 7, 99, 933
Bpu1102I GCTNAGC 1 cut(s) 76
Bpu14I TTCGAA 1 cut(s) 2556
BpuEI CTTGAG 8 cut(s) 124, 175, 485, 517, 1231, 1349, 2187, 2662
Bsa29I ATCGAT 1 cut(s) 2039
BsaAI YACGTR 1 cut(s) 118
BsaBI GATNNNNATC 1 cut(s) 2424
BsaHI GRCGYC 1 cut(s) 297
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 4 cut(s) 262, 292, 1149, 1179
Bse118I RCCGGY 2 cut(s) 524, 2723
Bse1I ACTGG 8 cut(s) 147, 303, 598, 619, 1184, 1398, 2319, 2368
Bse3DI GCAATG 1 cut(s) 369
Bse8I GATNNNNATC 1 cut(s) 2424
BseAI TCCGGA 1 cut(s) 284
BseBI CCWGG 5 cut(s) 82, 233, 1582, 1780, 2484
BseCI ATCGAT 1 cut(s) 2039
BseGI GGATG 4 cut(s) 496, 1624, 1825, 2809
BseJI GATNNNNATC 1 cut(s) 2424
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 8 cut(s) 21, 85, 113, 717, 924, 1559, 1984, 2565
BseNI ACTGG 8 cut(s) 147, 303, 598, 619, 1184, 1398, 2319, 2368
BseRI GAGGAG 5 cut(s) 99, 122, 559, 1110, 1651
BseSI GKGCMC 3 cut(s) 232, 391, 1601
BseYI CCCAGC 1 cut(s) 2866
BsgI GTGCAG 3 cut(s) 44, 1652, 2066
Bsh1236I CGCG 1 cut(s) 2790
BshFI GGCC 9 cut(s) 93, 122, 164, 230, 389, 924, 1563, 2433, 2885
BshNI GGYRCC 3 cut(s) 296, 1598, 1864
BshVI ATCGAT 1 cut(s) 2039
BsiHKAI GWGCWC 2 cut(s) 240, 1071
BsiHKCI CYCGRG 1 cut(s) 971
BsiSI CCGG 3 cut(s) 285, 525, 2724
BslFI GGGAC 1 cut(s) 2449
BsmAI GTCTC 7 cut(s) 155, 173, 816, 1116, 1171, 1391, 1873
BsmFI GGGAC 1 cut(s) 2449
BsmI GAATGC 1 cut(s) 1523
BsnI GGCC 9 cut(s) 93, 122, 164, 230, 389, 924, 1563, 2433, 2885
BsoBI CYCGRG 1 cut(s) 971
Bsp119I TTCGAA 1 cut(s) 2556
Bsp120I GGGCCC 2 cut(s) 228, 387
Bsp1286I GDGCHC 6 cut(s) 232, 240, 391, 1071, 1601, 3152
Bsp13I TCCGGA 1 cut(s) 284
Bsp1407I TGTACA 1 cut(s) 1710
Bsp1720I GCTNAGC 1 cut(s) 76
Bsp19I CCATGG 1 cut(s) 1849
BspANI GGCC 9 cut(s) 93, 122, 164, 230, 389, 924, 1563, 2433, 2885
BspCNI CTCAG 8 cut(s) 20, 84, 112, 718, 925, 1558, 1983, 2566
BspDI ATCGAT 1 cut(s) 2039
BspEI TCCGGA 1 cut(s) 284
BspFNI CGCG 1 cut(s) 2790
BspHI TCATGA 1 cut(s) 1480
BspPI GGATC 5 cut(s) 967, 1092, 1485, 2236, 2552
BspT104I TTCGAA 1 cut(s) 2556
BspT107I GGYRCC 3 cut(s) 296, 1598, 1864
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 2 cut(s) 524, 2723
BsrGI TGTACA 1 cut(s) 1710
BsrI ACTGG 8 cut(s) 147, 303, 598, 619, 1184, 1398, 2319, 2368
BssAI RCCGGY 2 cut(s) 524, 2723
BssNAI GTATAC 1 cut(s) 3092
BssNI GRCGYC 1 cut(s) 297
BssT1I CCWWGG 5 cut(s) 825, 1766, 1849, 2087, 2454
Bst1107I GTATAC 1 cut(s) 3092
Bst2UI CCWGG 5 cut(s) 82, 233, 1582, 1780, 2484
Bst4CI ACNGT 4 cut(s) 326, 889, 1664, 2699
Bst6I CTCTTC 4 cut(s) 634, 2410, 2852, 2976
BstACI GRCGYC 1 cut(s) 297
BstAPI GCANNNNNTGC 1 cut(s) 1573
BstAUI TGTACA 1 cut(s) 1710
BstBAI YACGTR 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 2556
BstC8I GCNNGC 5 cut(s) 162, 526, 1565, 1578, 2551
BstDSI CCRYGG 3 cut(s) 322, 1849, 2799
BstF5I GGATG 4 cut(s) 496, 1624, 1825, 2809
BstFNI CGCG 1 cut(s) 2790
BstH2I RGCGCY 2 cut(s) 257, 300
BstHHI GCGC 3 cut(s) 6, 256, 299
BstMAI GTCTC 7 cut(s) 155, 173, 816, 1116, 1171, 1391, 1873
BstNI CCWGG 5 cut(s) 82, 233, 1582, 1780, 2484
BstNSI RCATGY 2 cut(s) 1019, 2062
BstSCI CCNGG 5 cut(s) 80, 231, 1580, 1778, 2482
BstSFI CTRYAG 1 cut(s) 804
BstSLI GKGCMC 3 cut(s) 232, 391, 1601
BstUI CGCG 1 cut(s) 2790
BstV2I GAAGAC 3 cut(s) 1337, 2751, 3149
BstX2I RGATCY 2 cut(s) 1798, 2228
BstXI CCANNNNNNTGG 1 cut(s) 1266
BstYI RGATCY 2 cut(s) 1798, 2228
BstZ17I GTATAC 1 cut(s) 3092
Bsu15I ATCGAT 1 cut(s) 2039
BsuRI GGCC 9 cut(s) 93, 122, 164, 230, 389, 924, 1563, 2433, 2885
BsuTUI ATCGAT 1 cut(s) 2039
BtgI CCRYGG 3 cut(s) 322, 1849, 2799
BtsCI GGATG 4 cut(s) 496, 1624, 1825, 2809
BtsIMutI CAGTG 6 cut(s) 605, 612, 885, 1405, 1978, 2326
Cac8I GCNNGC 5 cut(s) 162, 526, 1565, 1578, 2551
CaiI CAGNNNCTG 1 cut(s) 1841
CciI TCATGA 1 cut(s) 1480
CfoI GCGC 3 cut(s) 6, 256, 299
Cfr10I RCCGGY 2 cut(s) 524, 2723
Cfr13I GGNCC 5 cut(s) 162, 228, 229, 387, 388
ClaI ATCGAT 1 cut(s) 2039
DinI GGCGCC 1 cut(s) 298
DriI GACNNNNNGTC 1 cut(s) 907
EaeI YGGCCR 2 cut(s) 120, 1561
Eam1104I CTCTTC 4 cut(s) 634, 2410, 2852, 2976
Eam1105I GACNNNNNGTC 1 cut(s) 907
EarI CTCTTC 4 cut(s) 634, 2410, 2852, 2976
EciI GGCGGA 1 cut(s) 100
Ecl136II GAGCTC 2 cut(s) 238, 1069
Eco130I CCWWGG 5 cut(s) 825, 1766, 1849, 2087, 2454
Eco147I AGGCCT 1 cut(s) 924
Eco24I GRGCYC 5 cut(s) 232, 240, 391, 1071, 3152
Eco32I GATATC 1 cut(s) 2988
Eco53kI GAGCTC 2 cut(s) 238, 1069
Eco57I CTGAAG 4 cut(s) 80, 939, 1461, 1818
Eco72I CACGTG 1 cut(s) 118
Eco88I CYCGRG 1 cut(s) 971
EcoICRI GAGCTC 2 cut(s) 238, 1069
EcoO109I RGGNCCY 3 cut(s) 228, 229, 387
EcoRI GAATTC 2 cut(s) 1804, 1904
EcoRII CCWGG 5 cut(s) 80, 231, 1580, 1778, 2482
EcoRV GATATC 1 cut(s) 2988
EcoT14I CCWWGG 5 cut(s) 825, 1766, 1849, 2087, 2454
EcoT38I GRGCYC 5 cut(s) 232, 240, 391, 1071, 3152
EgeI GGCGCC 1 cut(s) 298
EheI GGCGCC 1 cut(s) 298
ErhI CCWWGG 5 cut(s) 825, 1766, 1849, 2087, 2454
FalI AAGNNNNNCTT 6 cut(s) 539, 571, 1690, 1722, 2657, 2689
FaqI GGGAC 1 cut(s) 2449
FauI CCCGC 6 cut(s) 153, 207, 1711, 2746, 2795, 3071
FbaI TGATCA 2 cut(s) 474, 1822
FblI GTMKAC 1 cut(s) 3091
FokI GGATG 4 cut(s) 503, 1631, 1812, 2816
FriOI GRGCYC 5 cut(s) 232, 240, 391, 1071, 3152
FspBI CTAG 5 cut(s) 1284, 2384, 2529, 2535, 2871
GlaI GCGC 3 cut(s) 5, 255, 298
GsaI CCCAGC 1 cut(s) 2870
GsuI CTGGAG 2 cut(s) 254, 1113
HaeII RGCGCY 2 cut(s) 257, 300
HaeIII GGCC 9 cut(s) 93, 122, 164, 230, 389, 924, 1563, 2433, 2885
HapII CCGG 3 cut(s) 285, 525, 2724
HhaI GCGC 3 cut(s) 6, 256, 299
Hin1I GRCGYC 1 cut(s) 297
Hin6I GCGC 3 cut(s) 4, 254, 297
HinP1I GCGC 3 cut(s) 4, 254, 297
HincII GTYRAC 2 cut(s) 319, 1776
HindII GTYRAC 2 cut(s) 319, 1776
HindIII AAGCTT 2 cut(s) 2066, 2689
HpaII CCGG 3 cut(s) 285, 525, 2724
HphI GGTGA 7 cut(s) 200, 633, 871, 911, 1154, 2471, 2738
Hpy166II GTNNAC 4 cut(s) 319, 641, 1776, 3092
Hpy8I GTNNAC 4 cut(s) 319, 641, 1776, 3092
HpyCH4III ACNGT 4 cut(s) 326, 889, 1664, 2699
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 9 cut(s) 25, 225, 374, 414, 1521, 1659, 1669, 1844, 2047
HpySE526I ACGT 1 cut(s) 117
Hsp92I GRCGYC 1 cut(s) 297
HspAI GCGC 3 cut(s) 4, 254, 297
KasI GGCGCC 1 cut(s) 296
Kpn2I TCCGGA 1 cut(s) 284
KroI GCCGGC 1 cut(s) 524
KroNI GCCGGC 1 cut(s) 526
Ksp22I TGATCA 2 cut(s) 474, 1822
LmnI GCTCC 8 cut(s) 235, 270, 655, 794, 1244, 1506, 2138, 2581
LweI GCATC 2 cut(s) 1295, 1797
MaeI CTAG 5 cut(s) 1284, 2384, 2529, 2535, 2871
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 4 cut(s) 103, 899, 2321, 2699
MfeI CAATTG 2 cut(s) 1137, 1728
MflI RGATCY 2 cut(s) 1798, 2228
MhlI GDGCHC 6 cut(s) 232, 240, 391, 1071, 1601, 3152
MlsI TGGCCA 1 cut(s) 1563
MluNI TGGCCA 1 cut(s) 1563
Mly113I GGCGCC 1 cut(s) 297
MlyI GAGTC 6 cut(s) 818, 896, 1393, 2171, 2471, 2786
Mox20I TGGCCA 1 cut(s) 1563
MroI TCCGGA 1 cut(s) 284
MroNI GCCGGC 1 cut(s) 524
MroXI GAANNNNTTC 3 cut(s) 2103, 2672, 2846
MscI TGGCCA 1 cut(s) 1563
MseI TTAA 5 cut(s) 258, 662, 837, 2375, 3069
Msp20I TGGCCA 1 cut(s) 1563
MspA1I CMGCKG 2 cut(s) 41, 472
MspI CCGG 3 cut(s) 285, 525, 2724
MspR9I CCNGG 5 cut(s) 82, 233, 1582, 1780, 2484
MunI CAATTG 2 cut(s) 1137, 1728
Mva1269I GAATGC 1 cut(s) 1523
MvaI CCWGG 5 cut(s) 82, 233, 1582, 1780, 2484
MvnI CGCG 1 cut(s) 2790
NaeI GCCGGC 1 cut(s) 526
NarI GGCGCC 1 cut(s) 297
NcoI CCATGG 1 cut(s) 1849
NgoMIV GCCGGC 1 cut(s) 524
NmeAIII GCCGAG 1 cut(s) 1986
NmuCI GTSAC 3 cut(s) 103, 899, 2321
NspI RCATGY 2 cut(s) 1019, 2062
NspV TTCGAA 1 cut(s) 2556
PagI TCATGA 1 cut(s) 1480
PceI AGGCCT 1 cut(s) 924
PciI ACATGT 2 cut(s) 1015, 2058
PcsI WCGNNNNNNNCGW 2 cut(s) 2553, 2835
PctI GAATGC 1 cut(s) 1523
PdiI GCCGGC 1 cut(s) 526
PdmI GAANNNNTTC 3 cut(s) 2103, 2672, 2846
PflMI CCANNNNNTGG 1 cut(s) 1370
PleI GAGTC 6 cut(s) 817, 896, 1392, 2171, 2470, 2786
PluTI GGCGCC 1 cut(s) 300
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 6 cut(s) 817, 896, 1392, 2171, 2470, 2786
Ppu21I YACGTR 1 cut(s) 118
PscI ACATGT 2 cut(s) 1015, 2058
PsiI TTATAA 1 cut(s) 606
Psp124BI GAGCTC 2 cut(s) 240, 1071
Psp6I CCWGG 5 cut(s) 80, 231, 1580, 1778, 2482
PspCI CACGTG 1 cut(s) 118
PspFI CCCAGC 1 cut(s) 2866
PspGI CCWGG 5 cut(s) 80, 231, 1580, 1778, 2482
PspOMI GGGCCC 2 cut(s) 228, 387
PspPI GGNCC 5 cut(s) 162, 228, 229, 387, 388
PstNI CAGNNNCTG 1 cut(s) 1841
PsuI RGATCY 2 cut(s) 1798, 2228
PvuII CAGCTG 1 cut(s) 472
SacI GAGCTC 2 cut(s) 240, 1071
SaqAI TTAA 5 cut(s) 258, 662, 837, 2375, 3069
Sau96I GGNCC 5 cut(s) 162, 228, 229, 387, 388
ScaI AGTACT 4 cut(s) 538, 799, 1753, 2527
SchI GAGTC 6 cut(s) 818, 896, 1393, 2171, 2471, 2786
ScrFI CCNGG 5 cut(s) 82, 233, 1582, 1780, 2484
SduI GDGCHC 6 cut(s) 232, 240, 391, 1071, 1601, 3152
SfaNI GCATC 2 cut(s) 1295, 1797
SfcI CTRYAG 1 cut(s) 804
SfoI GGCGCC 1 cut(s) 298
SfuI TTCGAA 1 cut(s) 2556
SmlI CTYRAG 8 cut(s) 139, 154, 464, 532, 1246, 1328, 2202, 2677
SmoI CTYRAG 8 cut(s) 139, 154, 464, 532, 1246, 1328, 2202, 2677
SpeI ACTAGT 1 cut(s) 2528
SseBI AGGCCT 1 cut(s) 924
SspDI GGCGCC 1 cut(s) 296
SspI AATATT 1 cut(s) 2442
SspMI CTAG 5 cut(s) 1284, 2384, 2529, 2535, 2871
SstI GAGCTC 2 cut(s) 240, 1071
StuI AGGCCT 1 cut(s) 924
StyD4I CCNGG 5 cut(s) 80, 231, 1580, 1778, 2482
StyI CCWWGG 5 cut(s) 825, 1766, 1849, 2087, 2454
TaaI ACNGT 4 cut(s) 326, 889, 1664, 2699
TaiI ACGT 1 cut(s) 120
TatI WGTACW 6 cut(s) 536, 797, 1710, 1751, 1895, 2525
TauI GCSGC 4 cut(s) 125, 182, 297, 302
Tru1I TTAA 5 cut(s) 258, 662, 837, 2375, 3069
Tru9I TTAA 5 cut(s) 258, 662, 837, 2375, 3069
TscAI CASTG 6 cut(s) 605, 619, 892, 1405, 1978, 2326
TseFI GTSAC 3 cut(s) 103, 899, 2321
Tsp45I GTSAC 3 cut(s) 103, 899, 2321
TspGWI ACGGA 1 cut(s) 2816
TspRI CASTG 6 cut(s) 605, 619, 892, 1405, 1978, 2326
Van91I CCANNNNNTGG 1 cut(s) 1370
XapI RAATTY 8 cut(s) 691, 1001, 1206, 1804, 1904, 2378, 3071, 3174
XceI RCATGY 2 cut(s) 1019, 2062
XcmI CCANNNNNNNNNTGG 2 cut(s) 310, 2816
XmiI GTMKAC 1 cut(s) 3091
XmnI GAANNNNTTC 3 cut(s) 2103, 2672, 2846
XspI CTAG 5 cut(s) 1284, 2384, 2529, 2535, 2871
ZrmI AGTACT 4 cut(s) 538, 799, 1753, 2527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.