Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008310

Physical Location & Seq

Genomic Coordinates Forward (+)

18312061 .. 18320294

Gene Structure 8234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1089200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGTCTGTAATGTTGAGATTGAAGAAGGTTCAGCAAATAGCTCCACAGCTCCAGCAGCGCTTCTCTCAGACTCAGGTCTCCCCAATCTCTACGCACTTGAACCACCTCTGCCTCACAACCCATCGCCGACGAGACTCCTTCATCGGACTGCAGGAGCGCTACAAATGGGACCACGGCGGCTCCGCTGATGTTCGTATCCGCAAAATCAGAGCCGAGGCCAATTGCCCCCGATGTTCTTTCAACCGCATGGACCTCCTCTTCTCCGATCGCCGCTTACCCAACTTATCTCCTTCTCCTCCTCCACCAGATGATTCCACCACCAAGGCCAAGGCCGCCTCCACCTCTGCAACATCTGCCTCTGGAAACTCTGACTCTGAGATTCGTCAGTATCAGGCCCTCAATCTCTGCCCCAATTGCAAAACAGCCTACTACTTCCGACCCCACCAGATTGCTCCCCTCCAGGGCACCTTCGTAGAGATTGGGAGGCTCACCAACACCACCTCCTCCACCTCCTCCTCTTCCAATCGCAGCGCCACCAAAACCAACAACTCTGACAACAACAAGAAGTCACATTCTTCCCGAAATGGCAACAATAACGAAGGAGCAGATTCCGAGCCCAATACTAATAACAACGGGCTGAGGGTGTCTTTCTGGGATAGTTTGAGGTCATATGCCAATGGGGCTGACCCACCTGAGAACTGGCCTCCGCCTCCGCCCCCAGGCAATGGACTGGCCGTGCATACTCCCCCGGGTCCTCCTTTCGCCCCTGGAGTTAATGTCGTTCGGGCTTCTGCGCCCCCTGGGACTGGGGATGCTAGAGACAAGAATGCTTGGGGCGGTTCCAATTTGGGAAACAATTTGCCCACCCCTAAGGATATCTGCAAGGGCCTTGACAAGTTCGTTATAGGCCAACAAAGAGCCAAAAAGGTGCTCTCTGTGGCCGTTTATAACCACTACAAGAGGATATATCACGCCTCCTTGAAGAAAGGGTCAGGAGCAGAATCAGGAATTCCAAACAAAGTAGATGATGACGATAAAGTGGAGCTAGAAAAGAGCAATGTGCTCTTGATGGGCCCAACTGGCTCCGGGAAGACCTTGCTTGCAAAAACACTAGCTCGCTTTGTGAATGTTCCATTTGTCATTACAGATGCAACAACTTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTATAAACTACTAATGGCAGCTGAGTTTAATGTACAAGCAGCTCAACAAGGGATAGTTTACATTGACGAAGTTGACAAGATAACCAAAAAGGCTGAGAGTTTAAACATTAGCAGAGATGTTTCAGGAGAGGGTGTTCAGCAGGCTTTATTGAAAATGCTCGAAGGAACTATAGTGAATGTTCCTGAGAAGGGTGCAAGGAAGCATCCCCGGGGTGATAACATACAGATAGATACGAAAGATATCCTTTTTATTTGTGGCGGAGCATTTATTGATCTTGAAAAAACCATTTCAGAGAGACGACAGGATTCTTCTATTGGTTTCGGTGCTCCTGTCCGTGCAAACATGAGAGCTGGTGGTGTGACCAATTCAGTGGTGACATCATCTTTACTTGAATCGGTTGAAAGTTCTGATCTCATTTCTTATGGACTCATACCAGAGTTTATTGGACGTTTTCCAATACTAGTTAGTTTATCAGCTTTAACTGAGGACCAACTTGTTCAGGTCCTGATGGAACCAAAAAATGCTCTTGGCAAGCAGTACAAGAAATTATTTGGCATGAATAATGTGAAGCTACATTTCATGGAGAATGCACTAAGACTAATTGCAAACAAAGCGATGGCTAAGAATACTGGCGCCAGGGGTTTAAGAGCACTTTTGGAAAGCATTCTAACTGAAGCCATGTACGAGATTCCTGATGTTAAGACAGGAAAGGATAGAATAGATGCTGTAGTGGTTGATGAGGAGTCGGTTGGTACGGTAAATGCGCCTGGATGTGGAGGGAAGATTGTTCGAGGGGATGGTGCATTGGAAAGATACTTGCATGAAATCAGCTTGAAGGACTCAATGGAAAATGTAGAGGCGGCCGAAGGGGAGGCGGAGGGTGAATCAGAACAGTCATCCAGGGCTATGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

707

Amino Acids

76.63

Weight (kDa)

8.65

Isoelectric Point (pI)

39.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	350 - 554	1.2e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	354 - 460	6.8e-15	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	561 - 630	3.6e-08	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33360
fragaria_vesca	FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040
malus_domestica	MD00G1089200.v1.1
prunus_persica	Prupe.8G000600_v2.0.a1
pyrus_communis	pycom215g00140
rosa_chinensis	RchiOBHm_Chr6g0249331
rosa_laevigata	RLG00000015591
rosa_roxburghii	Rroxscaffold_7G00217860
rosa_rugosa	Rorug05G0490400 Rorug05G0490500.1
rosa_samantha	Rh6AG001200 Rh6BG009100 Rh6CG000300 Rh6DG000200
rosa_wichuraiana	Rw6G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AccB1I	GGYRCC	2 cut(s)	464, 1835
AccB7I	CCANNNNNTGG	1 cut(s)	725
AcoI	YGGCCR	3 cut(s)	732, 939, 2064
AcsI	RAATTY	1 cut(s)	1008
AcuI	CTGAAG	1 cut(s)	1896
AcyI	GRCGYC	1 cut(s)	1836
AfaI	GTAC	4 cut(s)	1236, 1742, 1886, 1957
AfeI	AGCGCT	2 cut(s)	59, 158
AfiI	CCNNNNNNNGG	6 cut(s)	461, 719, 725, 806, 1391, 1976
AhlI	ACTAGT	1 cut(s)	1663
AjnI	CCWGG	7 cut(s)	459, 718, 766, 799, 1838, 1969, 2102
AloI	GAACNNNNNNTCC	2 cut(s)	1320, 1352
Alw21I	GWGCWC	4 cut(s)	933, 1065, 1531, 1855
Alw26I	GTCTC	4 cut(s)	82, 126, 813, 1492
AlwNI	CAGNNNCTG	1 cut(s)	1708
Ama87I	CYCGRG	2 cut(s)	748, 1410
Aor51HI	AGCGCT	2 cut(s)	59, 158
ApaI	GGGCCC	1 cut(s)	1076
ApeKI	GCWGC	4 cut(s)	55, 528, 1220, 1241
ApoI	RAATTY	1 cut(s)	1008
Asp700I	GAANNNNTTC	1 cut(s)	1866
AspLEI	GCGC	6 cut(s)	60, 159, 533, 796, 1838, 1969
AspS9I	GGNCC	9 cut(s)	169, 250, 394, 752, 886, 1072, 1073, 1690, 1705
AsuC2I	CCSGG	5 cut(s)	749, 750, 1087, 1411, 1412
AsuHPI	GGTGA	4 cut(s)	481, 1427, 1588, 2096
AvaI	CYCGRG	2 cut(s)	748, 1410
AvaII	GGWCC	5 cut(s)	169, 250, 752, 1690, 1705
AxyI	CCTNAGG	1 cut(s)	870
BaeGI	GKGCMC	2 cut(s)	467, 1076
BanI	GGYRCC	2 cut(s)	464, 1835
BanII	GRGCYC	2 cut(s)	618, 1076
BbsI	GAAGAC	1 cut(s)	1097
Bbv12I	GWGCWC	4 cut(s)	933, 1065, 1531, 1855
BbvCI	CCTCAGC	1 cut(s)	638
BbvI	GCAGC	4 cut(s)	67, 540, 1232, 1253
BccI	CCATC	5 cut(s)	129, 1063, 1705, 1813, 1994
BceAI	ACGGC	3 cut(s)	190, 719, 926
BciT130I	CCWGG	7 cut(s)	461, 720, 768, 801, 1840, 1971, 2104
BciVI	GTATCC	1 cut(s)	206
BcnI	CCSGG	5 cut(s)	749, 750, 1087, 1411, 1412
BcoDI	GTCTC	4 cut(s)	82, 126, 813, 1492
BcuI	ACTAGT	1 cut(s)	1663
BfaI	CTAG	4 cut(s)	816, 1046, 1112, 1664
BfmI	CTRYAG	3 cut(s)	149, 1371, 1929
BfoI	RGCGCY	4 cut(s)	61, 160, 534, 1839
BfuI	GTATCC	1 cut(s)	206
BglI	GCCNNNNNGGC	2 cut(s)	680, 1080
BisI	GCNGC	8 cut(s)	56, 178, 271, 333, 529, 1221, 1242, 2064
BlsI	GCNGC	8 cut(s)	57, 179, 272, 334, 530, 1222, 1243, 2065
Bme18I	GGWCC	5 cut(s)	169, 250, 752, 1690, 1705
BmeT110I	CYCGRG	2 cut(s)	748, 1410
BmgT120I	GGNCC	9 cut(s)	169, 250, 394, 752, 886, 1072, 1073, 1690, 1705
BmiI	GGNNCC	9 cut(s)	170, 181, 466, 753, 841, 1074, 1084, 1716, 1837
BmrI	ACTGGG	1 cut(s)	816
BmsI	GCATC	4 cut(s)	802, 1138, 1414, 1915
BmuI	ACTGGG	1 cut(s)	816
BoxI	GACNNNNGTC	1 cut(s)	74
BpiI	GAAGAC	1 cut(s)	1097
BpmI	CTGGAG	3 cut(s)	35, 443, 789
Bpu10I	CCTNAGC	1 cut(s)	638
BpuMI	CCSGG	5 cut(s)	749, 750, 1087, 1411, 1412
BsaHI	GRCGYC	1 cut(s)	1836
BsaI	GGTCTC	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	6 cut(s)	461, 719, 725, 806, 1391, 1976
Bse1I	ACTGG	5 cut(s)	704, 735, 811, 1084, 1837
Bse21I	CCTNAGG	1 cut(s)	870
Bse3DI	GCAATG	2 cut(s)	730, 1063
BseBI	CCWGG	7 cut(s)	461, 720, 768, 801, 1840, 1971, 2104
BseGI	GGATG	5 cut(s)	817, 1405, 1979, 2005, 2099
BseLI	CCNNNNNNNGG	6 cut(s)	461, 719, 725, 806, 1391, 1976
BseMI	GCAATG	2 cut(s)	730, 1063
BseMII	CTCAG	9 cut(s)	80, 86, 366, 629, 684, 1215, 1287, 1377, 1677
BseNI	ACTGG	5 cut(s)	704, 735, 811, 1084, 1837
BseRI	GAGGAG	7 cut(s)	245, 285, 288, 493, 502, 505, 1958
BseSI	GKGCMC	2 cut(s)	467, 1076
BseX3I	CGGCCG	1 cut(s)	2064
BseXI	GCAGC	4 cut(s)	67, 540, 1232, 1253
Bsh1285I	CGRYCG	2 cut(s)	268, 2067
BshNI	GGYRCC	2 cut(s)	464, 1835
BsiEI	CGRYCG	2 cut(s)	268, 2067
BsiHKAI	GWGCWC	4 cut(s)	933, 1065, 1531, 1855
BsiHKCI	CYCGRG	2 cut(s)	748, 1410
BsiSI	CCGG	3 cut(s)	749, 1086, 1411
BslFI	GGGAC	2 cut(s)	182, 817
BslI	CCNNNNNNNGG	6 cut(s)	461, 719, 725, 806, 1391, 1976
BsmAI	GTCTC	4 cut(s)	82, 126, 813, 1492
BsmBI	CGTCTC	1 cut(s)	1492
BsmFI	GGGAC	2 cut(s)	182, 817
BsmI	GAATGC	3 cut(s)	832, 1795, 1866
Bso31I	GGTCTC	1 cut(s)	82
BsoBI	CYCGRG	2 cut(s)	748, 1410
Bsp120I	GGGCCC	1 cut(s)	1072
Bsp1286I	GDGCHC	7 cut(s)	467, 618, 933, 1065, 1076, 1531, 1855
Bsp1407I	TGTACA	1 cut(s)	1234
Bsp143I	GATC	3 cut(s)	265, 1474, 1612
BspCNI	CTCAG	9 cut(s)	79, 85, 367, 630, 685, 1216, 1288, 1378, 1678
BspLI	GGNNCC	9 cut(s)	170, 181, 466, 753, 841, 1074, 1084, 1716, 1837
BspMAI	CTGCAG	1 cut(s)	153
BspT107I	GGYRCC	2 cut(s)	464, 1835
BspTNI	GGTCTC	1 cut(s)	82
BsrDI	GCAATG	2 cut(s)	730, 1063
BsrGI	TGTACA	1 cut(s)	1234
BsrI	ACTGG	5 cut(s)	704, 735, 811, 1084, 1837
BssMI	GATC	3 cut(s)	265, 1474, 1612
BssNI	GRCGYC	1 cut(s)	1836
BssT1I	CCWWGG	2 cut(s)	321, 327
Bst2UI	CCWGG	7 cut(s)	461, 720, 768, 801, 1840, 1971, 2104
Bst4CI	ACNGT	2 cut(s)	1960, 2097
Bst6I	CTCTTC	2 cut(s)	263, 523
BstACI	GRCGYC	1 cut(s)	1836
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstAUI	TGTACA	1 cut(s)	1234
BstC8I	GCNNGC	4 cut(s)	1101, 1117, 1344, 1736
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	5 cut(s)	817, 1405, 1979, 2005, 2099
BstH2I	RGCGCY	4 cut(s)	61, 160, 534, 1839
BstHHI	GCGC	6 cut(s)	60, 159, 533, 796, 1838, 1969
BstKTI	GATC	3 cut(s)	268, 1477, 1615
BstMAI	GTCTC	4 cut(s)	82, 126, 813, 1492
BstMBI	GATC	3 cut(s)	265, 1474, 1612
BstMCI	CGRYCG	2 cut(s)	268, 2067
BstMWI	GCNNNNNNNGC	7 cut(s)	55, 332, 353, 414, 680, 1080, 1814
BstNI	CCWGG	7 cut(s)	461, 720, 768, 801, 1840, 1971, 2104
BstNSI	RCATGY	1 cut(s)	2119
BstPAI	GACNNNNGTC	1 cut(s)	74
BstSFI	CTRYAG	3 cut(s)	149, 1371, 1929
BstSLI	GKGCMC	2 cut(s)	467, 1076
BstV1I	GCAGC	4 cut(s)	67, 540, 1232, 1253
BstV2I	GAAGAC	1 cut(s)	1097
BstXI	CCANNNNNNTGG	1 cut(s)	1573
BstZI	CGGCCG	1 cut(s)	2064
Bsu36I	CCTNAGG	1 cut(s)	870
BsuI	GTATCC	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	172
BtgZI	GCGATG	2 cut(s)	107, 1832
BtsCI	GGATG	5 cut(s)	817, 1405, 1979, 2005, 2099
BtsIMutI	CAGTG	1 cut(s)	1578
Cac8I	GCNNGC	4 cut(s)	1101, 1117, 1344, 1736
CaiI	CAGNNNCTG	1 cut(s)	1708
CfoI	GCGC	6 cut(s)	60, 159, 533, 796, 1838, 1969
Cfr13I	GGNCC	9 cut(s)	169, 250, 394, 752, 886, 1072, 1073, 1690, 1705
Cfr9I	CCCGGG	2 cut(s)	748, 1410
Csp6I	GTAC	4 cut(s)	1235, 1741, 1885, 1956
CviAII	CATG	7 cut(s)	247, 1546, 1759, 1783, 1882, 2024, 2116
CviQI	GTAC	4 cut(s)	1235, 1741, 1885, 1956
DinI	GGCGCC	1 cut(s)	1837
DpnI	GATC	3 cut(s)	267, 1476, 1614
DpnII	GATC	3 cut(s)	265, 1474, 1612
DraI	TTTAAA	1 cut(s)	1305
EaeI	YGGCCR	3 cut(s)	732, 939, 2064
EagI	CGGCCG	1 cut(s)	2064
Eam1104I	CTCTTC	2 cut(s)	263, 523
EarI	CTCTTC	2 cut(s)	263, 523
EciI	GGCGGA	4 cut(s)	696, 702, 1476, 2093
EclXI	CGGCCG	1 cut(s)	2064
Eco130I	CCWWGG	2 cut(s)	321, 327
Eco24I	GRGCYC	2 cut(s)	618, 1076
Eco31I	GGTCTC	1 cut(s)	82
Eco32I	GATATC	2 cut(s)	877, 1444
Eco47I	GGWCC	5 cut(s)	169, 250, 752, 1690, 1705
Eco47III	AGCGCT	2 cut(s)	59, 158
Eco52I	CGGCCG	1 cut(s)	2064
Eco57I	CTGAAG	1 cut(s)	1896
Eco81I	CCTNAGG	1 cut(s)	870
Eco88I	CYCGRG	2 cut(s)	748, 1410
EcoO109I	RGGNCCY	4 cut(s)	394, 752, 886, 1705
EcoRI	GAATTC	1 cut(s)	1008
EcoRII	CCWGG	7 cut(s)	459, 718, 766, 799, 1838, 1969, 2102
EcoRV	GATATC	2 cut(s)	877, 1444
EcoT14I	CCWWGG	2 cut(s)	321, 327
EcoT38I	GRGCYC	2 cut(s)	618, 1076
EgeI	GGCGCC	1 cut(s)	1837
EheI	GGCGCC	1 cut(s)	1837
ErhI	CCWWGG	2 cut(s)	321, 327
Esp3I	CGTCTC	1 cut(s)	1492
FaeI	CATG	7 cut(s)	250, 1549, 1762, 1786, 1885, 2027, 2119
FalI	AAGNNNNNCTT	2 cut(s)	1431, 1463
FaqI	GGGAC	2 cut(s)	182, 817
FatI	CATG	7 cut(s)	246, 1545, 1758, 1782, 1881, 2023, 2115
FauNDI	CATATG	1 cut(s)	670
Fnu4HI	GCNGC	8 cut(s)	56, 178, 271, 333, 529, 1221, 1242, 2064
FokI	GGATG	5 cut(s)	824, 1392, 1986, 2012, 2086
FriOI	GRGCYC	2 cut(s)	618, 1076
Fsp4HI	GCNGC	8 cut(s)	56, 178, 271, 333, 529, 1221, 1242, 2064
FspBI	CTAG	4 cut(s)	816, 1046, 1112, 1664
GlaI	GCGC	6 cut(s)	59, 158, 532, 795, 1837, 1968
GluI	GCNGC	8 cut(s)	56, 178, 271, 333, 529, 1221, 1242, 2064
GsuI	CTGGAG	3 cut(s)	35, 443, 789
HaeII	RGCGCY	4 cut(s)	61, 160, 534, 1839
HapII	CCGG	3 cut(s)	749, 1086, 1411
HhaI	GCGC	6 cut(s)	60, 159, 533, 796, 1838, 1969
Hin1I	GRCGYC	1 cut(s)	1836
Hin1II	CATG	7 cut(s)	250, 1549, 1762, 1786, 1885, 2027, 2119
Hin6I	GCGC	6 cut(s)	58, 157, 531, 794, 1836, 1967
HinP1I	GCGC	6 cut(s)	58, 157, 531, 794, 1836, 1967
HincII	GTYRAC	1 cut(s)	1276
HindII	GTYRAC	1 cut(s)	1276
HpaII	CCGG	3 cut(s)	749, 1086, 1411
HphI	GGTGA	4 cut(s)	481, 1427, 1588, 2096
Hpy166II	GTNNAC	2 cut(s)	1261, 1276
Hpy8I	GTNNAC	2 cut(s)	1261, 1276
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	9 cut(s)	19, 148, 300, 478, 593, 1358, 1384, 2032, 2063
HpyCH4III	ACNGT	2 cut(s)	1960, 2097
HpyCH4IV	ACGT	1 cut(s)	1651
HpyF10VI	GCNNNNNNNGC	7 cut(s)	55, 332, 353, 414, 680, 1080, 1814
HpySE526I	ACGT	1 cut(s)	1651
Hsp92I	GRCGYC	1 cut(s)	1836
Hsp92II	CATG	7 cut(s)	250, 1549, 1762, 1786, 1885, 2027, 2119
HspAI	GCGC	6 cut(s)	58, 157, 531, 794, 1836, 1967
KasI	GGCGCC	1 cut(s)	1835
Kzo9I	GATC	3 cut(s)	265, 1474, 1612
Lsp1109I	GCAGC	4 cut(s)	67, 540, 1232, 1253
LweI	GCATC	4 cut(s)	802, 1138, 1414, 1915
MaeI	CTAG	4 cut(s)	816, 1046, 1112, 1664
MaeII	ACGT	1 cut(s)	1651
MaeIII	GTNAC	3 cut(s)	567, 1561, 1576
MalI	GATC	3 cut(s)	267, 1476, 1614
MboI	GATC	3 cut(s)	265, 1474, 1612
MboII	GAAGA	9 cut(s)	34, 250, 510, 567, 994, 1102, 1196, 1503, 1996
MfeI	CAATTG	2 cut(s)	220, 412
MhlI	GDGCHC	7 cut(s)	467, 618, 933, 1065, 1076, 1531, 1855
MluCI	AATT	8 cut(s)	220, 412, 844, 856, 1008, 1567, 1748, 1803
Mly113I	GGCGCC	1 cut(s)	1836
MlyI	GAGTC	6 cut(s)	64, 128, 365, 1623, 1955, 2036
MmeI	TCCRAC	2 cut(s)	460, 1159
MroXI	GAANNNNTTC	1 cut(s)	1866
MseI	TTAA	7 cut(s)	774, 1160, 1230, 1304, 1682, 1847, 1902
MspA1I	CMGCKG	2 cut(s)	185, 1223
MspI	CCGG	3 cut(s)	749, 1086, 1411
MssI	GTTTAAAC	1 cut(s)	1305
MunI	CAATTG	2 cut(s)	220, 412
Mva1269I	GAATGC	3 cut(s)	832, 1795, 1866
MvaI	CCWGG	7 cut(s)	461, 720, 768, 801, 1840, 1971, 2104
MwoI	GCNNNNNNNGC	7 cut(s)	55, 332, 353, 414, 680, 1080, 1814
NarI	GGCGCC	1 cut(s)	1836
NciI	CCSGG	5 cut(s)	749, 750, 1087, 1411, 1412
NdeI	CATATG	1 cut(s)	670
NdeII	GATC	3 cut(s)	265, 1474, 1612
NlaIII	CATG	7 cut(s)	250, 1549, 1762, 1786, 1885, 2027, 2119
NlaIV	GGNNCC	9 cut(s)	170, 181, 466, 753, 841, 1074, 1084, 1716, 1837
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	3 cut(s)	567, 1561, 1576
NspI	RCATGY	1 cut(s)	2119
PasI	CCCWGGG	1 cut(s)	800
PctI	GAATGC	3 cut(s)	832, 1795, 1866
PdmI	GAANNNNTTC	1 cut(s)	1866
PfeI	GAWTC	9 cut(s)	311, 379, 608, 1001, 1193, 1508, 1595, 1891, 2087
PflMI	CCANNNNNTGG	1 cut(s)	725
PfoI	TCCNGGA	1 cut(s)	1085
PkrI	GCNGC	8 cut(s)	57, 179, 272, 334, 530, 1222, 1243, 2065
Ple19I	CGATCG	1 cut(s)	268
PleI	GAGTC	6 cut(s)	64, 128, 365, 1623, 1954, 2036
PluTI	GGCGCC	1 cut(s)	1839
PmeI	GTTTAAAC	1 cut(s)	1305
PpsI	GAGTC	6 cut(s)	64, 128, 365, 1623, 1954, 2036
PpuMI	RGGWCCY	2 cut(s)	752, 1705
PshAI	GACNNNNGTC	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	948
Psp5II	RGGWCCY	2 cut(s)	752, 1705
Psp6I	CCWGG	7 cut(s)	459, 718, 766, 799, 1838, 1969, 2102
PspGI	CCWGG	7 cut(s)	459, 718, 766, 799, 1838, 1969, 2102
PspN4I	GGNNCC	9 cut(s)	170, 181, 466, 753, 841, 1074, 1084, 1716, 1837
PspOMI	GGGCCC	1 cut(s)	1072
PspPI	GGNCC	9 cut(s)	169, 250, 394, 752, 886, 1072, 1073, 1690, 1705
PspPPI	RGGWCCY	2 cut(s)	752, 1705
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	1708
PvuI	CGATCG	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	1223
RsaI	GTAC	4 cut(s)	1236, 1742, 1886, 1957
RsaNI	GTAC	4 cut(s)	1235, 1741, 1885, 1956
SaqAI	TTAA	7 cut(s)	774, 1160, 1230, 1304, 1682, 1847, 1902
SatI	GCNGC	8 cut(s)	56, 178, 271, 333, 529, 1221, 1242, 2064
Sau3AI	GATC	3 cut(s)	265, 1474, 1612
Sau96I	GGNCC	9 cut(s)	169, 250, 394, 752, 886, 1072, 1073, 1690, 1705
SchI	GAGTC	6 cut(s)	64, 128, 365, 1623, 1955, 2036
SduI	GDGCHC	7 cut(s)	467, 618, 933, 1065, 1076, 1531, 1855
SfaNI	GCATC	4 cut(s)	802, 1138, 1414, 1915
SfcI	CTRYAG	3 cut(s)	149, 1371, 1929
SfoI	GGCGCC	1 cut(s)	1837
SinI	GGWCC	5 cut(s)	169, 250, 752, 1690, 1705
SmaI	CCCGGG	2 cut(s)	750, 1412
SpeI	ACTAGT	1 cut(s)	1663
Sse9I	AATT	8 cut(s)	220, 412, 844, 856, 1008, 1567, 1748, 1803
SspDI	GGCGCC	1 cut(s)	1835
SspI	AATATT	1 cut(s)	1200
SspMI	CTAG	4 cut(s)	816, 1046, 1112, 1664
StyI	CCWWGG	2 cut(s)	321, 327
TaaI	ACNGT	2 cut(s)	1960, 2097
TaiI	ACGT	1 cut(s)	1654
TaqI	TCGA	2 cut(s)	1362, 1993
TasI	AATT	8 cut(s)	220, 412, 844, 856, 1008, 1567, 1748, 1803
TatI	WGTACW	2 cut(s)	1234, 1740
TauI	GCSGC	4 cut(s)	180, 273, 335, 2066
TfiI	GAWTC	9 cut(s)	311, 379, 608, 1001, 1193, 1508, 1595, 1891, 2087
Tru1I	TTAA	7 cut(s)	774, 1160, 1230, 1304, 1682, 1847, 1902
Tru9I	TTAA	7 cut(s)	774, 1160, 1230, 1304, 1682, 1847, 1902
TscAI	CASTG	1 cut(s)	1578
TseFI	GTSAC	3 cut(s)	567, 1561, 1576
TseI	GCWGC	4 cut(s)	55, 528, 1220, 1241
Tsp45I	GTSAC	3 cut(s)	567, 1561, 1576
TspDTI	ATGAA	4 cut(s)	130, 1771, 1775, 2040
TspGWI	ACGGA	1 cut(s)	1526
TspMI	CCCGGG	2 cut(s)	748, 1410
TspRI	CASTG	1 cut(s)	1578
Van91I	CCANNNNNTGG	1 cut(s)	725
VpaK11BI	GGWCC	5 cut(s)	169, 250, 752, 1690, 1705
XapI	RAATTY	1 cut(s)	1008
XceI	RCATGY	1 cut(s)	2119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	696
XmaI	CCCGGG	2 cut(s)	748, 1410
XmnI	GAANNNNTTC	1 cut(s)	1866
XspI	CTAG	4 cut(s)	816, 1046, 1112, 1664

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.