Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008310

Physical Location & Seq

Genomic Coordinates Reverse (-)

1278012 .. 1286181

Gene Structure 8170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG009100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGTCTGGCATGTTGAGATGGCAGAAGCTAAAGCATATAGCACAGCTCCACCAGCGGTTCACTCAAGTATCCGCAATCTCCACGCACCTGCACCACTTCAATATCACTAGCCATCATCGCCGAAGAGAGTCTCTCATCGGAGTGCAGGCGCGCTACAAGTGGGATCATGGCGGCTCCGGCTCCGGCGATGCCCGCACCACCCGTAAAATCAGGGCAGAGGCCAACTGCCCGCGCTGCTCCTTCAACCGTATGGACCTCATCTTCTCCGATCGCCGCTTACCTAACTTATCCCCGGCGGAGGAGGCCGGGAAGAATGGCTCTGGGCTTCAGTATCAGGCCCTCAATCTCTGCCCCAATTGCAAGACCGCCTACTACTTCCGACCTCACCAGGTTGCTCCCCTCCAAGGCACTTTCGTGGAGATTGGGAGGCTCACCAACACTAACACAACCTCTTCCAATCGCAACGCCACCAAAATCAAAACCAATGGTTCCAATCCCAATACCACAAACGACGATACTAATGGCCTGAGGGCATCCTTCTGGGACACTCTGAGATCATATGCTAATGCTAATGGGGCCTCGGAGCCACCTGGCAATTGGCCTCAGCCTCCCCCTGGCAACGGACTTGCTGTGCATACGCCCCCGGGCCCCCCTTTTGCACCTGGAGTTAATGTCATTCGCGCTACTGGAGATGCAGATGCAGATGCTGGAGACAAGAAGACTGCCTGGGGCGGCTCCAGTTTGGGAAAGGATTTGCCCACTCCTAAGGAGATCTGCAAGGGTCTTGATAAGTTCGTTATTGGCCAACAAAGAGCCAAAAAGGTGCTTTCTGTTGCTGTTTATAACCACTACAAACGAATTTATCATGCCTCCTTGCACAAAGGGTCAGCAGCAGAATCAGGAAAACCAAACACAATAGATAAAGAAGATAGTGTAGAGCTAGAAAAGAGCAATGTGCTCTTGATGGGCCCAACTGGATCTGGGAAGACGTTGCTTGCAAAAACACTAGCTCGATTTGTGAATGTGCCATTTGTCATTACTGATGCAACGAATTTAACACAGGCTGGTTATGTTGGGGAAGATGTCGAATCAATATTGCAAAAACTATTGGCGGCAGCTGACTTCAATGTACAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGTTTAAACATTAGCAGAGATGTTTCTGGAGAGGGTGTTCAGCAGGCTTTACTGAAAATGCTCGAAGGAACTATAGTGAACGTTCCTGAGAAGGGTGCGAGGAAGCATCCACGGGGTGATAACATACAGATAGATACGAAAGATATCCTTTTTATTTGTGGTGGAGCATTTGTAGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGCTTTGGTGCTCCTGTCCGTGCCAACATGAGAGCTGGTGGTGTAACCAACGCAATACTGACATCATCTTTACTTGAATTGGTTGAAAGTGCTGATCTCATTGCATATGGACTCATACCCGAGTTTATTGGACGTTTTGCAATATTAGTTAGTTTATCTGCTTTAACTGAAGACCAACTTGTTCAGGTACTGACAGAACCAAAAAATGCCCTTGGTAAGCAGTACAAGAAACTATTTAGCATGAACAATGTGAAGCTGCATTTCACGGACAAAGCACTAAGACTCATGGCAAAGAAAGCGATGGCTAAGAATACCGGTGCCAGGGGATTAAGATCGATATTGGAAAGTATTCTAACCGAAGCCATGTATGAGATTCCGGATGTTAAAACAGGAGAAGATAGAGTAGATGCTGTAGTGGTTGATGAGGAGTCTGTGGATTCAGGAAATGCCCCTGGATGTGGAGGGAAGATTATTCGAGGGGACGGTGCATTGGAAAGATACCTTCGTGAAATAAAGTTGAAAGAATCAGTGGAGTATGTCGAGGTAGCTGAAGGGGAGTCGGAGGGAGAATCAGAACATTCCAGGGCTATGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

670

Amino Acids

72.87

Weight (kDa)

8.78

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	315 - 519	7.6e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	319 - 425	1.3e-15	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	526 - 595	2.5e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33360
fragaria_vesca	FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040
malus_domestica	MD00G1089200.v1.1
prunus_persica	Prupe.8G000600_v2.0.a1
pyrus_communis	pycom215g00140
rosa_chinensis	RchiOBHm_Chr6g0249331
rosa_laevigata	RLG00000015591
rosa_roxburghii	Rroxscaffold_7G00217860
rosa_rugosa	Rorug05G0490400 Rorug05G0490500.1
rosa_samantha	Rh6AG001200 Rh6BG009100 Rh6CG000300 Rh6DG000200
rosa_wichuraiana	Rw6G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	843
AarI	CACCTGC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	1730
AccII	CGCG	3 cut(s)	151, 232, 681
AccIII	TCCGGA	1 cut(s)	1789
AclI	AACGTT	1 cut(s)	1275
AclWI	GGATC	2 cut(s)	171, 985
AcoI	YGGCCR	1 cut(s)	802
AcsI	RAATTY	2 cut(s)	858, 1051
AcuI	CTGAAG	3 cut(s)	311, 1602, 1983
AdeI	CACNNNGTG	1 cut(s)	1310
AfaI	GTAC	3 cut(s)	1131, 1602, 1637
AfiI	CCNNNNNNNGG	7 cut(s)	298, 404, 614, 620, 1286, 1734, 1871
AgeI	ACCGGT	1 cut(s)	1727
AgsI	TTSAA	7 cut(s)	100, 244, 1126, 1376, 1490, 1499, 1933
AjnI	CCWGG	8 cut(s)	387, 589, 613, 661, 725, 1733, 1864, 1994
AleI	CACNNNNGTG	1 cut(s)	413
AloI	GAACNNNNNNTCC	2 cut(s)	1215, 1247
AluBI	AGCT	9 cut(s)	28, 46, 940, 1010, 1118, 1139, 1448, 1669, 1961
AluI	AGCT	9 cut(s)	28, 46, 940, 1010, 1118, 1139, 1448, 1669, 1961
Alw21I	GWGCWC	2 cut(s)	960, 1426
Alw26I	GTCTC	3 cut(s)	135, 705, 1387
AlwI	GGATC	2 cut(s)	171, 985
AlwNI	CAGNNNCTG	2 cut(s)	707, 1603
Ama87I	CYCGRG	2 cut(s)	643, 1532
Aor13HI	TCCGGA	1 cut(s)	1789
AoxI	GGCC	9 cut(s)	219, 303, 336, 523, 576, 599, 646, 802, 967
ApaI	GGGCCC	2 cut(s)	650, 971
ApeKI	GCWGC	5 cut(s)	234, 890, 1115, 1136, 1669
ApoI	RAATTY	2 cut(s)	858, 1051
AsiGI	ACCGGT	1 cut(s)	1727
Asp700I	GAANNNNTTC	1 cut(s)	1761
AspLEI	GCGC	4 cut(s)	151, 153, 234, 683
AspS9I	GGNCC	7 cut(s)	253, 337, 576, 646, 647, 967, 968
AsuC2I	CCSGG	4 cut(s)	293, 307, 644, 645
AsuHPI	GGTGA	3 cut(s)	377, 424, 1322
AvaI	CYCGRG	2 cut(s)	643, 1532
AvaII	GGWCC	1 cut(s)	253
AxyI	CCTNAGG	2 cut(s)	527, 765
BaeGI	GKGCMC	2 cut(s)	650, 971
BaeI	ACNNNNGTAYC	4 cut(s)	51, 84, 1903, 1936
BalI	TGGCCA	1 cut(s)	804
BanI	GGYRCC	1 cut(s)	1730
BanII	GRGCYC	2 cut(s)	650, 971
BbsI	GAAGAC	3 cut(s)	725, 992, 1590
Bbv12I	GWGCWC	2 cut(s)	960, 1426
BbvCI	CCTCAGC	1 cut(s)	603
BbvI	GCAGC	5 cut(s)	221, 902, 1127, 1148, 1656
BccI	CCATC	4 cut(s)	12, 120, 958, 1708
BciT130I	CCWGG	8 cut(s)	389, 591, 615, 663, 727, 1735, 1866, 1996
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	4 cut(s)	293, 307, 644, 645
BcoDI	GTCTC	3 cut(s)	135, 705, 1387
BfaI	CTAG	3 cut(s)	108, 941, 1007
BfmI	CTRYAG	2 cut(s)	1266, 1824
BfuAI	ACCTGC	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	79
BglII	AGATCT	2 cut(s)	771, 1369
BisI	GCNGC	9 cut(s)	172, 235, 274, 733, 891, 1113, 1116, 1137, 1670
BlsI	GCNGC	9 cut(s)	173, 236, 275, 734, 892, 1114, 1117, 1138, 1671
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	2 cut(s)	643, 1532
BmgT120I	GGNCC	7 cut(s)	253, 337, 576, 646, 647, 967, 968
BmsI	GCATC	8 cut(s)	178, 542, 682, 688, 694, 1033, 1309, 1810
BpiI	GAAGAC	3 cut(s)	725, 992, 1590
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	5 cut(s)	684, 708, 721, 729, 1242
Bpu10I	CCTNAGC	1 cut(s)	603
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	4 cut(s)	293, 307, 644, 645
Bsa29I	ATCGAT	1 cut(s)	1748
BsaBI	GATNNNNATC	1 cut(s)	1744
BsaWI	WCCGGW	2 cut(s)	1727, 1789
BsaXI	ACNNNNNCTCC	6 cut(s)	657, 687, 1215, 1245, 1350, 1380
Bsc4I	CCNNNNNNNGG	7 cut(s)	298, 404, 614, 620, 1286, 1734, 1871
Bse118I	RCCGGY	1 cut(s)	1727
Bse1I	ACTGG	3 cut(s)	691, 738, 979
Bse21I	CCTNAGG	2 cut(s)	527, 765
Bse3DI	GCAATG	2 cut(s)	958, 1512
Bse8I	GATNNNNATC	1 cut(s)	1744
BseAI	TCCGGA	1 cut(s)	1789
BseBI	CCWGG	8 cut(s)	389, 591, 615, 663, 727, 1735, 1866, 1996
BseCI	ATCGAT	1 cut(s)	1748
BseGI	GGATG	4 cut(s)	533, 1300, 1798, 1874
BseJI	GATNNNNATC	1 cut(s)	1744
BseLI	CCNNNNNNNGG	7 cut(s)	298, 404, 614, 620, 1286, 1734, 1871
BseMI	GCAATG	2 cut(s)	958, 1512
BseMII	CTCAG	5 cut(s)	518, 542, 617, 1182, 1272
BseNI	ACTGG	3 cut(s)	691, 738, 979
BsePI	GCGCGC	1 cut(s)	149
BseRI	GAGGAG	2 cut(s)	314, 1853
BseSI	GKGCMC	2 cut(s)	650, 971
BseXI	GCAGC	5 cut(s)	221, 902, 1127, 1148, 1656
BsgI	GTGCAG	2 cut(s)	74, 164
Bsh1236I	CGCG	3 cut(s)	151, 232, 681
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	9 cut(s)	221, 305, 338, 525, 578, 601, 648, 804, 969
BshNI	GGYRCC	1 cut(s)	1730
BshTI	ACCGGT	1 cut(s)	1727
BshVI	ATCGAT	1 cut(s)	1748
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	960, 1426
BsiHKCI	CYCGRG	2 cut(s)	643, 1532
BsiSI	CCGG	7 cut(s)	177, 183, 293, 306, 644, 1728, 1790
BslFI	GGGAC	2 cut(s)	557, 1907
BslI	CCNNNNNNNGG	7 cut(s)	298, 404, 614, 620, 1286, 1734, 1871
BsmAI	GTCTC	3 cut(s)	135, 705, 1387
BsmBI	CGTCTC	1 cut(s)	1387
BsmFI	GGGAC	2 cut(s)	557, 1907
BsnI	GGCC	9 cut(s)	221, 305, 338, 525, 578, 601, 648, 804, 969
BsoBI	CYCGRG	2 cut(s)	643, 1532
Bsp120I	GGGCCC	2 cut(s)	646, 967
Bsp1286I	GDGCHC	4 cut(s)	650, 960, 971, 1426
Bsp13I	TCCGGA	1 cut(s)	1789
Bsp1407I	TGTACA	1 cut(s)	1129
Bsp143I	GATC	8 cut(s)	163, 268, 554, 771, 977, 1369, 1507, 1745
BspANI	GGCC	9 cut(s)	221, 305, 338, 525, 578, 601, 648, 804, 969
BspCNI	CTCAG	5 cut(s)	519, 543, 616, 1183, 1273
BspDI	ATCGAT	1 cut(s)	1748
BspEI	TCCGGA	1 cut(s)	1789
BspFNI	CGCG	3 cut(s)	151, 232, 681
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	171, 985
BspT107I	GGYRCC	1 cut(s)	1730
BsrDI	GCAATG	2 cut(s)	958, 1512
BsrFI	RCCGGY	1 cut(s)	1727
BsrGI	TGTACA	1 cut(s)	1129
BsrI	ACTGG	3 cut(s)	691, 738, 979
BssAI	RCCGGY	1 cut(s)	1727
BssHII	GCGCGC	1 cut(s)	149
BssMI	GATC	8 cut(s)	163, 268, 554, 771, 977, 1369, 1507, 1745
BssT1I	CCWWGG	2 cut(s)	403, 1624
Bst2UI	CCWGG	8 cut(s)	389, 591, 615, 663, 727, 1735, 1866, 1996
Bst4CI	ACNGT	2 cut(s)	248, 1898
Bst6I	CTCTTC	2 cut(s)	118, 457
BstAUI	TGTACA	1 cut(s)	1129
BstC8I	GCNNGC	6 cut(s)	147, 151, 193, 230, 996, 1239
BstDEI	CTNAG	9 cut(s)	527, 551, 603, 765, 1182, 1191, 1281, 1691, 1719
BstDSI	CCRYGG	1 cut(s)	1304
BstF5I	GGATG	4 cut(s)	533, 1300, 1798, 1874
BstFNI	CGCG	3 cut(s)	151, 232, 681
BstHHI	GCGC	4 cut(s)	151, 153, 234, 683
BstKTI	GATC	8 cut(s)	166, 271, 557, 774, 980, 1372, 1510, 1748
BstMAI	GTCTC	3 cut(s)	135, 705, 1387
BstMBI	GATC	8 cut(s)	163, 268, 554, 771, 977, 1369, 1507, 1745
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 192, 234, 302, 357, 575, 1709
BstNI	CCWGG	8 cut(s)	389, 591, 615, 663, 727, 1735, 1866, 1996
BstNSI	RCATGY	2 cut(s)	13, 2011
BstSFI	CTRYAG	2 cut(s)	1266, 1824
BstSLI	GKGCMC	2 cut(s)	650, 971
BstUI	CGCG	3 cut(s)	151, 232, 681
BstV1I	GCAGC	5 cut(s)	221, 902, 1127, 1148, 1656
BstV2I	GAAGAC	3 cut(s)	725, 992, 1590
BstX2I	RGATCY	3 cut(s)	771, 977, 1369
BstYI	RGATCY	3 cut(s)	771, 977, 1369
Bsu15I	ATCGAT	1 cut(s)	1748
Bsu36I	CCTNAGG	2 cut(s)	527, 765
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	9 cut(s)	221, 305, 338, 525, 578, 601, 648, 804, 969
BsuTUI	ATCGAT	1 cut(s)	1748
BtgI	CCRYGG	1 cut(s)	1304
BtgZI	GCGATG	3 cut(s)	101, 201, 1727
BtsCI	GGATG	4 cut(s)	533, 1300, 1798, 1874
BtsIMutI	CAGTG	1 cut(s)	1947
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	6 cut(s)	147, 151, 193, 230, 996, 1239
CaiI	CAGNNNCTG	2 cut(s)	707, 1603
CfoI	GCGC	4 cut(s)	151, 153, 234, 683
Cfr10I	RCCGGY	1 cut(s)	1727
Cfr13I	GGNCC	7 cut(s)	253, 337, 576, 646, 647, 967, 968
Cfr9I	CCCGGG	1 cut(s)	643
ClaI	ATCGAT	1 cut(s)	1748
CsiI	ACCWGGT	1 cut(s)	387
Csp6I	GTAC	3 cut(s)	1130, 1601, 1636
CspAI	ACCGGT	1 cut(s)	1727
CviAII	CATG	8 cut(s)	10, 167, 866, 1441, 1654, 1699, 1777, 2008
CviQI	GTAC	3 cut(s)	1130, 1601, 1636
DdeI	CTNAG	9 cut(s)	527, 551, 603, 765, 1182, 1191, 1281, 1691, 1719
DpnI	GATC	8 cut(s)	165, 270, 556, 773, 979, 1371, 1509, 1747
DpnII	GATC	8 cut(s)	163, 268, 554, 771, 977, 1369, 1507, 1745
DraI	TTTAAA	1 cut(s)	1200
DraIII	CACNNNGTG	1 cut(s)	1310
EaeI	YGGCCR	1 cut(s)	802
Eam1104I	CTCTTC	2 cut(s)	118, 457
EarI	CTCTTC	2 cut(s)	118, 457
EciI	GGCGGA	1 cut(s)	311
Eco130I	CCWWGG	2 cut(s)	403, 1624
Eco24I	GRGCYC	2 cut(s)	650, 971
Eco32I	GATATC	1 cut(s)	1339
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	3 cut(s)	311, 1602, 1983
Eco81I	CCTNAGG	2 cut(s)	527, 765
Eco88I	CYCGRG	2 cut(s)	643, 1532
EcoO109I	RGGNCCY	3 cut(s)	337, 576, 647
EcoRII	CCWGG	8 cut(s)	387, 589, 613, 661, 725, 1733, 1864, 1994
EcoRV	GATATC	1 cut(s)	1339
EcoT14I	CCWWGG	2 cut(s)	403, 1624
EcoT38I	GRGCYC	2 cut(s)	650, 971
ErhI	CCWWGG	2 cut(s)	403, 1624
Esp3I	CGTCTC	1 cut(s)	1387
FaeI	CATG	8 cut(s)	13, 170, 869, 1444, 1657, 1702, 1780, 2011
FalI	AAGNNNNNCTT	4 cut(s)	1326, 1358, 1575, 1607
FaqI	GGGAC	2 cut(s)	557, 1907
FatI	CATG	8 cut(s)	9, 166, 865, 1440, 1653, 1698, 1776, 2007
FauI	CCCGC	2 cut(s)	200, 237
FauNDI	CATATG	2 cut(s)	559, 1519
Fnu4HI	GCNGC	9 cut(s)	172, 235, 274, 733, 891, 1113, 1116, 1137, 1670
FokI	GGATG	4 cut(s)	520, 1287, 1805, 1881
FriOI	GRGCYC	2 cut(s)	650, 971
Fsp4HI	GCNGC	9 cut(s)	172, 235, 274, 733, 891, 1113, 1116, 1137, 1670
FspBI	CTAG	3 cut(s)	108, 941, 1007
GlaI	GCGC	4 cut(s)	150, 152, 233, 682
GluI	GCNGC	9 cut(s)	172, 235, 274, 733, 891, 1113, 1116, 1137, 1670
GsuI	CTGGAG	5 cut(s)	684, 708, 721, 729, 1242
HaeIII	GGCC	9 cut(s)	221, 305, 338, 525, 578, 601, 648, 804, 969
HapII	CCGG	7 cut(s)	177, 183, 293, 306, 644, 1728, 1790
HhaI	GCGC	4 cut(s)	151, 153, 234, 683
Hin1II	CATG	8 cut(s)	13, 170, 869, 1444, 1657, 1702, 1780, 2011
Hin6I	GCGC	4 cut(s)	149, 151, 232, 681
HinP1I	GCGC	4 cut(s)	149, 151, 232, 681
HincII	GTYRAC	1 cut(s)	1171
HindII	GTYRAC	1 cut(s)	1171
HpaII	CCGG	7 cut(s)	177, 183, 293, 306, 644, 1728, 1790
HphI	GGTGA	3 cut(s)	377, 424, 1322
Hpy166II	GTNNAC	4 cut(s)	60, 1156, 1171, 1273
Hpy188I	TCNGA	8 cut(s)	140, 268, 380, 552, 583, 1390, 1975, 1987
Hpy188III	TCNNGA	9 cut(s)	785, 900, 961, 1221, 1280, 1373, 1790, 1854, 1919
Hpy8I	GTNNAC	4 cut(s)	60, 1156, 1171, 1273
Hpy99I	CGWCG	1 cut(s)	515
HpyAV	CCTTC	7 cut(s)	250, 547, 1180, 1253, 1279, 1925, 1958
HpyCH4III	ACNGT	2 cut(s)	248, 1898
HpyCH4IV	ACGT	3 cut(s)	989, 1275, 1546
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 192, 234, 302, 357, 575, 1709
HpyF3I	CTNAG	9 cut(s)	527, 551, 603, 765, 1182, 1191, 1281, 1691, 1719
HpySE526I	ACGT	3 cut(s)	989, 1275, 1546
Hsp92II	CATG	8 cut(s)	13, 170, 869, 1444, 1657, 1702, 1780, 2011
HspAI	GCGC	4 cut(s)	149, 151, 232, 681
Kpn2I	TCCGGA	1 cut(s)	1789
Kzo9I	GATC	8 cut(s)	163, 268, 554, 771, 977, 1369, 1507, 1745
LmnI	GCTCC	9 cut(s)	51, 179, 185, 242, 400, 583, 740, 1358, 1429
Lsp1109I	GCAGC	5 cut(s)	221, 902, 1127, 1148, 1656
LweI	GCATC	8 cut(s)	178, 542, 682, 688, 694, 1033, 1309, 1810
MabI	ACCWGGT	1 cut(s)	387
MaeI	CTAG	3 cut(s)	108, 941, 1007
MaeII	ACGT	3 cut(s)	989, 1275, 1546
MaeIII	GTNAC	1 cut(s)	1456
MalI	GATC	8 cut(s)	165, 270, 556, 773, 979, 1371, 1509, 1747
MboI	GATC	8 cut(s)	163, 268, 554, 771, 977, 1369, 1507, 1745
MfeI	CAATTG	2 cut(s)	355, 595
MflI	RGATCY	3 cut(s)	771, 977, 1369
MhlI	GDGCHC	4 cut(s)	650, 960, 971, 1426
MlsI	TGGCCA	1 cut(s)	804
MluCI	AATT	5 cut(s)	355, 595, 858, 1051, 1490
MluNI	TGGCCA	1 cut(s)	804
MlyI	GAGTC	5 cut(s)	137, 1518, 1689, 1850, 1979
MmeI	TCCRAC	2 cut(s)	403, 1953
Mox20I	TGGCCA	1 cut(s)	804
MroI	TCCGGA	1 cut(s)	1789
MroXI	GAANNNNTTC	1 cut(s)	1761
MscI	TGGCCA	1 cut(s)	804
MseI	TTAA	6 cut(s)	669, 1055, 1199, 1577, 1742, 1797
MslI	CAYNNNNRTG	2 cut(s)	140, 413
Msp20I	TGGCCA	1 cut(s)	804
MspA1I	CMGCKG	2 cut(s)	55, 1118
MspI	CCGG	7 cut(s)	177, 183, 293, 306, 644, 1728, 1790
MssI	GTTTAAAC	1 cut(s)	1200
MunI	CAATTG	2 cut(s)	355, 595
MvaI	CCWGG	8 cut(s)	389, 591, 615, 663, 727, 1735, 1866, 1996
MvnI	CGCG	3 cut(s)	151, 232, 681
MwoI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 192, 234, 302, 357, 575, 1709
NciI	CCSGG	4 cut(s)	293, 307, 644, 645
NdeI	CATATG	2 cut(s)	559, 1519
NdeII	GATC	8 cut(s)	163, 268, 554, 771, 977, 1369, 1507, 1745
NlaIII	CATG	8 cut(s)	13, 170, 869, 1444, 1657, 1702, 1780, 2011
NspI	RCATGY	2 cut(s)	13, 2011
OliI	CACNNNNGTG	1 cut(s)	413
PaqCI	CACCTGC	1 cut(s)	96
PauI	GCGCGC	1 cut(s)	149
PdmI	GAANNNNTTC	1 cut(s)	1761
PfeI	GAWTC	7 cut(s)	896, 1088, 1403, 1786, 1850, 1937, 1982
PinAI	ACCGGT	1 cut(s)	1727
PkrI	GCNGC	9 cut(s)	173, 236, 275, 734, 892, 1114, 1117, 1138, 1671
Ple19I	CGATCG	1 cut(s)	271
PleI	GAGTC	5 cut(s)	136, 1518, 1689, 1849, 1978
PmeI	GTTTAAAC	1 cut(s)	1200
PpsI	GAGTC	5 cut(s)	136, 1518, 1689, 1849, 1978
PsiI	TTATAA	1 cut(s)	843
Psp1406I	AACGTT	1 cut(s)	1275
Psp6I	CCWGG	8 cut(s)	387, 589, 613, 661, 725, 1733, 1864, 1994
PspGI	CCWGG	8 cut(s)	387, 589, 613, 661, 725, 1733, 1864, 1994
PspOMI	GGGCCC	2 cut(s)	646, 967
PspPI	GGNCC	7 cut(s)	253, 337, 576, 646, 647, 967, 968
PstNI	CAGNNNCTG	2 cut(s)	707, 1603
PsuI	RGATCY	3 cut(s)	771, 977, 1369
PteI	GCGCGC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	1118
RsaI	GTAC	3 cut(s)	1131, 1602, 1637
RsaNI	GTAC	3 cut(s)	1130, 1601, 1636
RseI	CAYNNNNRTG	2 cut(s)	140, 413
SaqAI	TTAA	6 cut(s)	669, 1055, 1199, 1577, 1742, 1797
SatI	GCNGC	9 cut(s)	172, 235, 274, 733, 891, 1113, 1116, 1137, 1670
Sau3AI	GATC	8 cut(s)	163, 268, 554, 771, 977, 1369, 1507, 1745
Sau96I	GGNCC	7 cut(s)	253, 337, 576, 646, 647, 967, 968
SchI	GAGTC	5 cut(s)	137, 1518, 1689, 1850, 1979
SduI	GDGCHC	4 cut(s)	650, 960, 971, 1426
SexAI	ACCWGGT	1 cut(s)	387
SfaNI	GCATC	8 cut(s)	178, 542, 682, 688, 694, 1033, 1309, 1810
SfcI	CTRYAG	2 cut(s)	1266, 1824
SinI	GGWCC	1 cut(s)	253
SmaI	CCCGGG	1 cut(s)	645
SmiMI	CAYNNNNRTG	2 cut(s)	140, 413
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	5 cut(s)	355, 595, 858, 1051, 1490
SspI	AATATT	2 cut(s)	1095, 1557
SspMI	CTAG	3 cut(s)	108, 941, 1007
StyI	CCWWGG	2 cut(s)	403, 1624
TaaI	ACNGT	2 cut(s)	248, 1898
TaiI	ACGT	3 cut(s)	992, 1278, 1549
TaqI	TCGA	6 cut(s)	1012, 1086, 1257, 1748, 1888, 1953
TasI	AATT	5 cut(s)	355, 595, 858, 1051, 1490
TatI	WGTACW	2 cut(s)	1129, 1635
TauI	GCSGC	4 cut(s)	174, 276, 735, 1115
TfiI	GAWTC	7 cut(s)	896, 1088, 1403, 1786, 1850, 1937, 1982
Tru1I	TTAA	6 cut(s)	669, 1055, 1199, 1577, 1742, 1797
Tru9I	TTAA	6 cut(s)	669, 1055, 1199, 1577, 1742, 1797
TscAI	CASTG	1 cut(s)	1947
TseI	GCWGC	5 cut(s)	234, 890, 1115, 1136, 1669
TspDTI	ATGAA	2 cut(s)	1179, 1670
TspGWI	ACGGA	3 cut(s)	636, 1421, 1694
TspMI	CCCGGG	1 cut(s)	643
TspRI	CASTG	1 cut(s)	1947
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	858, 1051
XceI	RCATGY	2 cut(s)	13, 2011
XcmI	CCANNNNNNNNNTGG	1 cut(s)	594
XmaI	CCCGGG	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	1761
XspI	CTAG	3 cut(s)	108, 941, 1007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.