Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008310

Physical Location & Seq

Genomic Coordinates Reverse (-)

68383486 .. 68391174

Gene Structure 7689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1995 bp

ATGTCTGGCATGTTGAGATGGCAGAAGCTAAAGCATATAGCACAGCTCCACCAACGGTTCACTCAAGTATCCGCAATCTCCACGCACCTGCACCACTTCAATATCACTAGCCATCATCGCCGAAGAGAGTCTCTCATCGGAGTGCAGGCGCGCTACAAGTGGGATCACGGCGGCTCCGGCTCCGGCTCCGGCGATGCCCGCACCACCCGTAAAATCAGGGCAGAGGCCAACTGCCCGCGCTGCTCCTTCAACCGTATGGACCTCATCTTCTCCGATCGCCGCTTACCTAACTTATCCCCTCCTCCTCCGCCGGCGGAGGAGGCCGGGAAGAATGGCTCTGAGCTTCAGTATCAGGCCCTCAATCTCTGCCCCAATTGCAAGACCGCCTACTACTTCCGACCTCACCAGGTTGCTCCCCTCCAAGGCACTTTCGTGGAGATTGGGAGGCTCACCAACACTAACACAACCTCTTCCAATCGTAACGCCACCAAAATCAAAACCAATGGTTCCAATCCCAATACCACAAACGACGATACTAATGGCCTGAGGGCATCCTTCTGGGACACTCTGAGATCATATGCTAATGCTAATGGGGCGTCGGAGCCACCTGGCAATTGGCCTCAGCCTCCCCTGGCAATGGACTTGCTGTGCATACGCCCCCGGGCCCACCTTTTGCACCTGGAGTTAATGTCATTCGCGCTACTGGAGATGCAGATGCAGATGCTGGAGACAAGAAAACTGCCTGGGGCGGCTCCAATTTGGGAAAGGATTTGCCCACTCCTAAGGAGATCTGCAAGGGTCTTGATAAGTTCGTTATTGGCCAACAAAGAGCCAAAAAGGTCAGCAGCAGAATCAGGAAAACCAAACACAATAGATAAAGAAGATAATGTAGAGCTAGAAAAGAGCAATGTGCTCTTGATGGGCCCAACTGGATCTGGTATTAAATACTTCCAAAGCACTCTTCTCAACTTATGCACTCCTGTTGTTTATATTCTTAGCCCTGCTGGTTATGTTGGGGAAGATGTCGAATCAATATTGCAAAAACTATTGGCGGCAGCTGACTTCAATGTACAAGCTGCTCAACAAGGGATTGTTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGTTTAAACATTAGCAGAGATGTTTCTGGAGAGGGTGTTCAGCAGGCTTTACTGAAAATGCTCGAAGGAACTATAGTGAACGTTCCGGAGAAGGGTGCGAGGAAGCATCCACGGGGTGATAACATACAGACTTCATCAGTGCATGCTTTATTCATCCTATATCATGAATTCTATCTTGAGCTACAAGCTGAACTGGGTAAAGTGTTTCACTATGAAGACAGTCAAAGCAATATAATCTCCTACCCTACGAATTTTAAAGCTTTGACTGGTGAATATCCTGATTTTGAATACAACCTCCACCATATTCATATTAGTTCACTATTACAATATCATGATCCTAAAACTCATGTAATTGATCTGCAGATAGATACGAAAGATATCCTTTTTATTTGTGGTGGAGCATTTGTAGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGTGCTCCTGTCCGTGCCAACATGAGAGCTGGTGGTGTAACCAACGCAATACTGACATCATCTTTACTTGAATCGGTTGAAAGTGCTGATCTCATTGCGTATGGACTCATACCCGAGTTTATTGGACGTTTTGCAATATTAGTTAGTTTATCTGCTTTAACTGAAGACCAGCTTGTTCAGGTACTGACGGAACCAAAAAATGCCCTTGGTAAGCAGTACAAGAAACTATTTAGCATGAACAATGTGAAGCTGCATTTCACGGACAAAGCACTAAGACTCATGGCAAAGAAAGCGATGGCTAAGAATACCGGTGCCAGGGGATTAAGATCGATATTGGAAAGTATTCTAACCGAATCCATGTATGAGGTGAGGAAGAATCCATTGCTTATCTGCATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

664

Amino Acids

74.02

Weight (kDa)

8.89

Isoelectric Point (pI)

44.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	301 - 430	3.5e-12	AAA domain (Cdc48 subfamily)
ClpB_D2-small	PF10431	584 - 653	3.2e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33360
fragaria_vesca	FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040
malus_domestica	MD00G1089200.v1.1
prunus_persica	Prupe.8G000600_v2.0.a1
pyrus_communis	pycom215g00140
rosa_chinensis	RchiOBHm_Chr6g0249331
rosa_laevigata	RLG00000015591
rosa_roxburghii	Rroxscaffold_7G00217860
rosa_rugosa	Rorug05G0490400 Rorug05G0490500.1
rosa_samantha	Rh6AG001200 Rh6BG009100 Rh6CG000300 Rh6DG000200
rosa_wichuraiana	Rw6G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	1904
AccII	CGCG	3 cut(s)	151, 238, 698
AccIII	TCCGGA	1 cut(s)	1219
AclI	AACGTT	1 cut(s)	1215
AclWI	GGATC	3 cut(s)	171, 940, 1463
AcoI	YGGCCR	1 cut(s)	819
AcsI	RAATTY	2 cut(s)	1301, 1384
AcuI	CTGAAG	2 cut(s)	329, 1776
AcyI	GRCGYC	1 cut(s)	596
AdeI	CACNNNGTG	1 cut(s)	1250
AfaI	GTAC	3 cut(s)	1071, 1776, 1811
AfiI	CCNNNNNNNGG	4 cut(s)	422, 637, 1226, 1908
AgeI	ACCGGT	1 cut(s)	1901
AgsI	TTSAA	7 cut(s)	100, 250, 1066, 1421, 1550, 1664, 1673
AjnI	CCWGG	6 cut(s)	405, 607, 630, 678, 742, 1907
AjuI	GAANNNNNNNTTGG	2 cut(s)	945, 977
AleI	CACNNNNGTG	1 cut(s)	431
AloI	GAACNNNNNNTCC	2 cut(s)	1155, 1187
Alw21I	GWGCWC	2 cut(s)	915, 1600
Alw26I	GTCTC	3 cut(s)	135, 722, 1561
AlwI	GGATC	3 cut(s)	171, 940, 1463
AlwNI	CAGNNNCTG	2 cut(s)	724, 1777
Ama87I	CYCGRG	2 cut(s)	660, 1706
Aor13HI	TCCGGA	1 cut(s)	1219
AoxI	GGCC	8 cut(s)	225, 321, 354, 541, 617, 663, 819, 922
ApaI	GGGCCC	2 cut(s)	667, 926
ApeKI	GCWGC	5 cut(s)	240, 845, 1055, 1076, 1843
ApoI	RAATTY	2 cut(s)	1301, 1384
AsiGI	ACCGGT	1 cut(s)	1901
Asp700I	GAANNNNTTC	1 cut(s)	1935
AspLEI	GCGC	4 cut(s)	151, 153, 240, 700
AspS9I	GGNCC	6 cut(s)	259, 355, 663, 664, 922, 923
AsuC2I	CCSGG	3 cut(s)	325, 661, 662
AsuHPI	GGTGA	5 cut(s)	395, 442, 1262, 1415, 1972
AvaI	CYCGRG	2 cut(s)	660, 1706
AvaII	GGWCC	1 cut(s)	259
AxyI	CCTNAGG	2 cut(s)	545, 782
BaeGI	GKGCMC	2 cut(s)	667, 926
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BalI	TGGCCA	1 cut(s)	821
BanI	GGYRCC	1 cut(s)	1904
BanII	GRGCYC	2 cut(s)	667, 926
BbsI	GAAGAC	2 cut(s)	1356, 1764
Bbv12I	GWGCWC	2 cut(s)	915, 1600
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	5 cut(s)	227, 857, 1063, 1067, 1830
BccI	CCATC	4 cut(s)	12, 120, 913, 1882
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	6 cut(s)	407, 609, 632, 680, 744, 1909
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	3 cut(s)	325, 661, 662
BcoDI	GTCTC	3 cut(s)	135, 722, 1561
BfaI	CTAG	2 cut(s)	108, 896
BfmI	CTRYAG	2 cut(s)	1206, 1493
BfuAI	ACCTGC	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	79
BglII	AGATCT	2 cut(s)	788, 1543
BisI	GCNGC	9 cut(s)	172, 241, 280, 750, 846, 1053, 1056, 1077, 1844
BlsI	GCNGC	9 cut(s)	173, 242, 281, 751, 847, 1054, 1057, 1078, 1845
Bme1390I	CCNGG	9 cut(s)	325, 407, 609, 632, 661, 662, 680, 744, 1909
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	2 cut(s)	660, 1706
BmgT120I	GGNCC	6 cut(s)	259, 355, 663, 664, 922, 923
BmrFI	CCNGG	9 cut(s)	325, 407, 609, 632, 661, 662, 680, 744, 1909
BmrI	ACTGGG	1 cut(s)	1337
BmsI	GCATC	6 cut(s)	184, 560, 699, 705, 711, 1249
BmuI	ACTGGG	1 cut(s)	1337
BpiI	GAAGAC	2 cut(s)	1356, 1764
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	4 cut(s)	701, 725, 746, 1182
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	2 cut(s)	48, 1331
BpuMI	CCSGG	3 cut(s)	325, 661, 662
Bsa29I	ATCGAT	1 cut(s)	1922
BsaBI	GATNNNNATC	1 cut(s)	1918
BsaHI	GRCGYC	1 cut(s)	596
BsaJI	CCNNGG	8 cut(s)	421, 630, 659, 660, 743, 1244, 1798, 1908
BsaWI	WCCGGW	2 cut(s)	1219, 1901
BsaXI	ACNNNNNCTCC	8 cut(s)	158, 188, 674, 704, 1155, 1185, 1524, 1554
Bsc4I	CCNNNNNNNGG	4 cut(s)	422, 637, 1226, 1908
Bse118I	RCCGGY	2 cut(s)	310, 1901
Bse1I	ACTGG	4 cut(s)	708, 934, 1332, 1405
Bse21I	CCTNAGG	2 cut(s)	545, 782
Bse3DI	GCAATG	4 cut(s)	642, 913, 1686, 1973
Bse8I	GATNNNNATC	1 cut(s)	1918
BseAI	TCCGGA	1 cut(s)	1219
BseBI	CCWGG	6 cut(s)	407, 609, 632, 680, 744, 1909
BseCI	ATCGAT	1 cut(s)	1922
BseDI	CCNNGG	8 cut(s)	421, 630, 659, 660, 743, 1244, 1798, 1908
BseGI	GGATG	3 cut(s)	551, 1240, 1287
BseJI	GATNNNNATC	1 cut(s)	1918
BseLI	CCNNNNNNNGG	4 cut(s)	422, 637, 1226, 1908
BseMI	GCAATG	4 cut(s)	642, 913, 1686, 1973
BseMII	CTCAG	5 cut(s)	330, 536, 560, 635, 1122
BseNI	ACTGG	4 cut(s)	708, 934, 1332, 1405
BsePI	GCGCGC	1 cut(s)	149
BseRI	GAGGAG	3 cut(s)	291, 294, 332
BseSI	GKGCMC	2 cut(s)	667, 926
BseXI	GCAGC	5 cut(s)	227, 857, 1063, 1067, 1830
BsgI	GTGCAG	2 cut(s)	74, 164
Bsh1236I	CGCG	3 cut(s)	151, 238, 698
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	8 cut(s)	227, 323, 356, 543, 619, 665, 821, 924
BshNI	GGYRCC	1 cut(s)	1904
BshTI	ACCGGT	1 cut(s)	1901
BshVI	ATCGAT	1 cut(s)	1922
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	915, 1600
BsiHKCI	CYCGRG	2 cut(s)	660, 1706
BsiSI	CCGG	8 cut(s)	177, 183, 189, 311, 324, 661, 1220, 1902
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	4 cut(s)	422, 637, 1226, 1908
BsmAI	GTCTC	3 cut(s)	135, 722, 1561
BsmBI	CGTCTC	1 cut(s)	1561
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	8 cut(s)	227, 323, 356, 543, 619, 665, 821, 924
BsoBI	CYCGRG	2 cut(s)	660, 1706
Bsp120I	GGGCCC	2 cut(s)	663, 922
Bsp1286I	GDGCHC	4 cut(s)	667, 915, 926, 1600
Bsp13I	TCCGGA	1 cut(s)	1219
Bsp1407I	TGTACA	1 cut(s)	1069
BspANI	GGCC	8 cut(s)	227, 323, 356, 543, 619, 665, 821, 924
BspCNI	CTCAG	5 cut(s)	331, 537, 561, 634, 1123
BspDI	ATCGAT	1 cut(s)	1922
BspEI	TCCGGA	1 cut(s)	1219
BspFNI	CGCG	3 cut(s)	151, 238, 698
BspHI	TCATGA	2 cut(s)	1297, 1465
BspMAI	CTGCAG	1 cut(s)	1497
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	3 cut(s)	171, 940, 1463
BspT107I	GGYRCC	1 cut(s)	1904
BsrDI	GCAATG	4 cut(s)	642, 913, 1686, 1973
BsrFI	RCCGGY	2 cut(s)	310, 1901
BsrGI	TGTACA	1 cut(s)	1069
BsrI	ACTGG	4 cut(s)	708, 934, 1332, 1405
BssAI	RCCGGY	2 cut(s)	310, 1901
BssECI	CCNNGG	8 cut(s)	421, 630, 659, 660, 743, 1244, 1798, 1908
BssHII	GCGCGC	1 cut(s)	149
BssNI	GRCGYC	1 cut(s)	596
BssT1I	CCWWGG	2 cut(s)	421, 1798
Bst2UI	CCWGG	6 cut(s)	407, 609, 632, 680, 744, 1909
Bst4CI	ACNGT	3 cut(s)	57, 254, 1355
Bst6I	CTCTTC	3 cut(s)	118, 475, 966
BstACI	GRCGYC	1 cut(s)	596
BstAUI	TGTACA	1 cut(s)	1069
BstC8I	GCNNGC	7 cut(s)	147, 151, 199, 236, 312, 1179, 1278
BstDSI	CCRYGG	1 cut(s)	1244
BstF5I	GGATG	3 cut(s)	551, 1240, 1287
BstFNI	CGCG	3 cut(s)	151, 238, 698
BstHHI	GCGC	4 cut(s)	151, 153, 240, 700
BstMAI	GTCTC	3 cut(s)	135, 722, 1561
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	8 cut(s)	117, 177, 198, 240, 320, 375, 593, 1883
BstNI	CCWGG	6 cut(s)	407, 609, 632, 680, 744, 1909
BstNSI	RCATGY	3 cut(s)	13, 1280, 1990
BstSCI	CCNGG	9 cut(s)	323, 405, 607, 630, 659, 660, 678, 742, 1907
BstSFI	CTRYAG	2 cut(s)	1206, 1493
BstSLI	GKGCMC	2 cut(s)	667, 926
BstUI	CGCG	3 cut(s)	151, 238, 698
BstV1I	GCAGC	5 cut(s)	227, 857, 1063, 1067, 1830
BstV2I	GAAGAC	2 cut(s)	1356, 1764
BstX2I	RGATCY	3 cut(s)	788, 932, 1543
BstYI	RGATCY	3 cut(s)	788, 932, 1543
Bsu15I	ATCGAT	1 cut(s)	1922
Bsu36I	CCTNAGG	2 cut(s)	545, 782
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	8 cut(s)	227, 323, 356, 543, 619, 665, 821, 924
BsuTUI	ATCGAT	1 cut(s)	1922
BtgI	CCRYGG	1 cut(s)	1244
BtgZI	GCGATG	3 cut(s)	101, 207, 1901
BtsCI	GGATG	3 cut(s)	551, 1240, 1287
BtsIMutI	CAGTG	1 cut(s)	1278
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	7 cut(s)	147, 151, 199, 236, 312, 1179, 1278
CaiI	CAGNNNCTG	2 cut(s)	724, 1777
CciI	TCATGA	2 cut(s)	1297, 1465
CfoI	GCGC	4 cut(s)	151, 153, 240, 700
Cfr10I	RCCGGY	2 cut(s)	310, 1901
Cfr13I	GGNCC	6 cut(s)	259, 355, 663, 664, 922, 923
Cfr9I	CCCGGG	1 cut(s)	660
ClaI	ATCGAT	1 cut(s)	1922
CseI	GACGC	1 cut(s)	585
CsiI	ACCWGGT	1 cut(s)	405
Csp6I	GTAC	3 cut(s)	1070, 1775, 1810
CspAI	ACCGGT	1 cut(s)	1901
CviQI	GTAC	3 cut(s)	1070, 1775, 1810
DraI	TTTAAA	2 cut(s)	1140, 1390
DraIII	CACNNNGTG	1 cut(s)	1250
EaeI	YGGCCR	1 cut(s)	819
Eam1104I	CTCTTC	3 cut(s)	118, 475, 966
EarI	CTCTTC	3 cut(s)	118, 475, 966
EciI	GGCGGA	2 cut(s)	297, 329
Eco130I	CCWWGG	2 cut(s)	421, 1798
Eco24I	GRGCYC	2 cut(s)	667, 926
Eco32I	GATATC	1 cut(s)	1513
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	329, 1776
Eco81I	CCTNAGG	2 cut(s)	545, 782
Eco88I	CYCGRG	2 cut(s)	660, 1706
EcoO109I	RGGNCCY	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	1301
EcoRII	CCWGG	6 cut(s)	405, 607, 630, 678, 742, 1907
EcoRV	GATATC	1 cut(s)	1513
EcoT14I	CCWWGG	2 cut(s)	421, 1798
EcoT38I	GRGCYC	2 cut(s)	667, 926
ErhI	CCWWGG	2 cut(s)	421, 1798
Esp3I	CGTCTC	1 cut(s)	1561
FalI	AAGNNNNNCTT	4 cut(s)	1500, 1532, 1749, 1781
FaqI	GGGAC	1 cut(s)	575
FauI	CCCGC	2 cut(s)	206, 243
FauNDI	CATATG	1 cut(s)	577
Fnu4HI	GCNGC	9 cut(s)	172, 241, 280, 750, 846, 1053, 1056, 1077, 1844
FokI	GGATG	3 cut(s)	538, 1227, 1274
FriOI	GRGCYC	2 cut(s)	667, 926
Fsp4HI	GCNGC	9 cut(s)	172, 241, 280, 750, 846, 1053, 1056, 1077, 1844
FspBI	CTAG	2 cut(s)	108, 896
GlaI	GCGC	4 cut(s)	150, 152, 239, 699
GluI	GCNGC	9 cut(s)	172, 241, 280, 750, 846, 1053, 1056, 1077, 1844
GsuI	CTGGAG	4 cut(s)	701, 725, 746, 1182
HaeIII	GGCC	8 cut(s)	227, 323, 356, 543, 619, 665, 821, 924
HapII	CCGG	8 cut(s)	177, 183, 189, 311, 324, 661, 1220, 1902
HgaI	GACGC	1 cut(s)	585
HhaI	GCGC	4 cut(s)	151, 153, 240, 700
Hin1I	GRCGYC	1 cut(s)	596
Hin6I	GCGC	4 cut(s)	149, 151, 238, 698
HinP1I	GCGC	4 cut(s)	149, 151, 238, 698
HincII	GTYRAC	1 cut(s)	1111
HindII	GTYRAC	1 cut(s)	1111
HindIII	AAGCTT	1 cut(s)	1392
HinfI	GANTC	9 cut(s)	128, 851, 1028, 1577, 1664, 1698, 1869, 1946, 1969
HpaII	CCGG	8 cut(s)	177, 183, 189, 311, 324, 661, 1220, 1902
HphI	GGTGA	5 cut(s)	395, 442, 1262, 1415, 1972
Hpy166II	GTNNAC	5 cut(s)	60, 1096, 1111, 1213, 1451
Hpy188I	TCNGA	7 cut(s)	140, 274, 340, 398, 570, 601, 1564
Hpy8I	GTNNAC	5 cut(s)	60, 1096, 1111, 1213, 1451
Hpy99I	CGWCG	2 cut(s)	533, 601
HpyAV	CCTTC	5 cut(s)	256, 565, 1120, 1193, 1219
HpyCH4III	ACNGT	3 cut(s)	57, 254, 1355
HpyCH4IV	ACGT	2 cut(s)	1215, 1720
HpyF10VI	GCNNNNNNNGC	8 cut(s)	117, 177, 198, 240, 320, 375, 593, 1883
HpySE526I	ACGT	2 cut(s)	1215, 1720
Hsp92I	GRCGYC	1 cut(s)	596
HspAI	GCGC	4 cut(s)	149, 151, 238, 698
Kpn2I	TCCGGA	1 cut(s)	1219
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
Lsp1109I	GCAGC	5 cut(s)	227, 857, 1063, 1067, 1830
LweI	GCATC	6 cut(s)	184, 560, 699, 705, 711, 1249
MabI	ACCWGGT	1 cut(s)	405
MaeI	CTAG	2 cut(s)	108, 896
MaeII	ACGT	2 cut(s)	1215, 1720
MaeIII	GTNAC	2 cut(s)	479, 1630
MfeI	CAATTG	2 cut(s)	373, 613
MflI	RGATCY	3 cut(s)	788, 932, 1543
MhlI	GDGCHC	4 cut(s)	667, 915, 926, 1600
MlsI	TGGCCA	1 cut(s)	821
MluCI	AATT	6 cut(s)	373, 613, 756, 1301, 1384, 1485
MluNI	TGGCCA	1 cut(s)	821
MlyI	GAGTC	3 cut(s)	137, 1692, 1863
MmeI	TCCRAC	2 cut(s)	421, 579
Mox20I	TGGCCA	1 cut(s)	821
MreI	CGCCGGCG	1 cut(s)	310
MroI	TCCGGA	1 cut(s)	1219
MroNI	GCCGGC	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	1935
MscI	TGGCCA	1 cut(s)	821
MseI	TTAA	6 cut(s)	686, 942, 1139, 1389, 1751, 1916
MslI	CAYNNNNRTG	2 cut(s)	140, 431
Msp20I	TGGCCA	1 cut(s)	821
MspA1I	CMGCKG	1 cut(s)	1058
MspI	CCGG	8 cut(s)	177, 183, 189, 311, 324, 661, 1220, 1902
MspR9I	CCNGG	9 cut(s)	325, 407, 609, 632, 661, 662, 680, 744, 1909
MssI	GTTTAAAC	1 cut(s)	1140
MunI	CAATTG	2 cut(s)	373, 613
MvaI	CCWGG	6 cut(s)	407, 609, 632, 680, 744, 1909
MvnI	CGCG	3 cut(s)	151, 238, 698
MwoI	GCNNNNNNNGC	8 cut(s)	117, 177, 198, 240, 320, 375, 593, 1883
NaeI	GCCGGC	1 cut(s)	312
NciI	CCSGG	3 cut(s)	325, 661, 662
NdeI	CATATG	1 cut(s)	577
NgoMIV	GCCGGC	1 cut(s)	310
NspI	RCATGY	3 cut(s)	13, 1280, 1990
OliI	CACNNNNGTG	1 cut(s)	431
PaeI	GCATGC	1 cut(s)	1280
PagI	TCATGA	2 cut(s)	1297, 1465
PaqCI	CACCTGC	1 cut(s)	96
PauI	GCGCGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	1935
PfeI	GAWTC	6 cut(s)	851, 1028, 1577, 1664, 1946, 1969
PinAI	ACCGGT	1 cut(s)	1901
PkrI	GCNGC	9 cut(s)	173, 242, 281, 751, 847, 1054, 1057, 1078, 1845
Ple19I	CGATCG	1 cut(s)	277
PleI	GAGTC	3 cut(s)	136, 1692, 1863
PmeI	GTTTAAAC	1 cut(s)	1140
PpsI	GAGTC	3 cut(s)	136, 1692, 1863
Psp1406I	AACGTT	1 cut(s)	1215
Psp6I	CCWGG	6 cut(s)	405, 607, 630, 678, 742, 1907
PspGI	CCWGG	6 cut(s)	405, 607, 630, 678, 742, 1907
PspOMI	GGGCCC	2 cut(s)	663, 922
PspPI	GGNCC	6 cut(s)	259, 355, 663, 664, 922, 923
PstI	CTGCAG	1 cut(s)	1497
PstNI	CAGNNNCTG	2 cut(s)	724, 1777
PsuI	RGATCY	3 cut(s)	788, 932, 1543
PteI	GCGCGC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	1058
RsaI	GTAC	3 cut(s)	1071, 1776, 1811
RsaNI	GTAC	3 cut(s)	1070, 1775, 1810
RseI	CAYNNNNRTG	2 cut(s)	140, 431
SaqAI	TTAA	6 cut(s)	686, 942, 1139, 1389, 1751, 1916
SatI	GCNGC	9 cut(s)	172, 241, 280, 750, 846, 1053, 1056, 1077, 1844
Sau96I	GGNCC	6 cut(s)	259, 355, 663, 664, 922, 923
SchI	GAGTC	3 cut(s)	137, 1692, 1863
ScrFI	CCNGG	9 cut(s)	325, 407, 609, 632, 661, 662, 680, 744, 1909
SduI	GDGCHC	4 cut(s)	667, 915, 926, 1600
SexAI	ACCWGGT	1 cut(s)	405
SfaNI	GCATC	6 cut(s)	184, 560, 699, 705, 711, 1249
SfcI	CTRYAG	2 cut(s)	1206, 1493
SgrAI	CRCCGGYG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	259
SmaI	CCCGGG	1 cut(s)	662
SmiMI	CAYNNNNRTG	2 cut(s)	140, 431
SmlI	CTYRAG	2 cut(s)	63, 1310
SmoI	CTYRAG	2 cut(s)	63, 1310
SphI	GCATGC	1 cut(s)	1280
Sse9I	AATT	6 cut(s)	373, 613, 756, 1301, 1384, 1485
SspI	AATATT	2 cut(s)	1035, 1731
SspMI	CTAG	2 cut(s)	108, 896
StyD4I	CCNGG	9 cut(s)	323, 405, 607, 630, 659, 660, 678, 742, 1907
StyI	CCWWGG	2 cut(s)	421, 1798
TaaI	ACNGT	3 cut(s)	57, 254, 1355
TaiI	ACGT	2 cut(s)	1218, 1723
TaqI	TCGA	3 cut(s)	1026, 1197, 1922
TasI	AATT	6 cut(s)	373, 613, 756, 1301, 1384, 1485
TatI	WGTACW	2 cut(s)	1069, 1809
TauI	GCSGC	4 cut(s)	174, 282, 752, 1055
TfiI	GAWTC	6 cut(s)	851, 1028, 1577, 1664, 1946, 1969
Tru1I	TTAA	6 cut(s)	686, 942, 1139, 1389, 1751, 1916
Tru9I	TTAA	6 cut(s)	686, 942, 1139, 1389, 1751, 1916
TscAI	CASTG	1 cut(s)	1278
TseI	GCWGC	5 cut(s)	240, 845, 1055, 1076, 1843
TspDTI	ATGAA	7 cut(s)	1119, 1257, 1276, 1314, 1362, 1430, 1844
TspGWI	ACGGA	3 cut(s)	1595, 1796, 1868
TspMI	CCCGGG	1 cut(s)	660
TspRI	CASTG	1 cut(s)	1278
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	2 cut(s)	1301, 1384
XceI	RCATGY	3 cut(s)	13, 1280, 1990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XmaI	CCCGGG	1 cut(s)	660
XmnI	GAANNNNTTC	1 cut(s)	1935
XspI	CTAG	2 cut(s)	108, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.