pycom215g00140

ATP-dependent Clp protease ATP-binding subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000215
Physical Location & Seq
Forward (+)
284418 .. 288242
3825 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom215g00140.4

Sequence Viewer

Length: 1437 bp
ATGTCTGGAATGTTGAGATTGAAGAAGGTTCAGCAAATAGCTCCACAGCTCCAGCAGCGCTTCTCTCAGACTCAGGTCTCCCCAATCTCCACGCACTTGAACCACCTCCACCTCACAACCCATCGCCGACGAGACTCCTTCATCGGACTGCAGGAGCGCTACAAATGGGACCACGGCGGCTCCGCCGATGTTCGTACCCGCAAAATCAGAGCCGAGGCCAATTGTCCCCGATGTTCTTTCAACCGCATGGACCTCCTCTTCTCCGATCGCCGCTTACCCAACTTATCTCCTTCTCCTCCTCCACCAGATGATTCCACCACCAAGGCCAAGGCCGCCTCCACCTCTGCAACATCTGCCTCTGGAAACTCTGACTCTGAGATTCGTCAGTATCAGGCCCTCAATCTCTGCCCCAATTGCAAAACAGCCTACTACTTCCGACCCCACCAGATTGCTCCCCTCCAGGGCACCTTCGTAGAGATTGGGAGGCTCACCAACACCACCACCTCCTCCTCCTCCTCCTCTTCCAATCGCAGCGCCACCAAAACCAACAACTCTGACAACAACAAGAAGTCCCATTCTTCCCGAAATGGCAGCAATAACGGAGGAGCAGATTCCGAGCCCAATACTAATAACAACGGGCTGAGGGTGTCTTTCTGGGATAGTTTGAGGTCATATGCCAATGGGGCGGACCCACCTGAGAACTGGCCTCCGTCTCCGCCCCCAGGCAATGGACTGGCCGTGCATACTCCCCCGGGCCCTCCTTTTGCCCCTGGAGTTAATGTCATTCGGGCTTCTGTGCCCCCTGGGACTAGGGATGCTGGAGACAAGAATGCTTGGGGCGGTTCCAATTTGGGAAACAATTTGCCCACCCCTAAGGAGATCTGCAAGGGTCTTGACAAGTTCGTTATAGGCCAACAAAGAGCCAAAAAGGTGCTCTCTGTGGCCGTTTATAACCACTACAAAAGGATATATCACGCCTCCTTAAAAAAAGGGTCAGGAGCAGAATCAGGAATTCCAAACAAAGTAGATGACGATGATAAAGTGGAGCTAGAAAAGAGCAATGTGCTCTTGATGGGCCCAACTGGCTCCGGGAAGACCTTGCTTGCAAAAACACTAGCTCGCTTTGTGAATGTTCCATTTGTCATTACAGATGCAACAACTTTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTATAAACTACTAATGGCAGCTGAGTTTAATGTACAAGCAGCTCAACAAGGGATAGTTTACATTGACGAAGTTGACAAGATAACCAAAAAGGCTGAGAGTTTAAACATTAGCAGAGATGTTTCAGGAGAGGGTGTTCAGCAGGCTTTATTGAAAATGCTCGAAGGAACTATAGTGAATGTTCCTGAGAAGGGTGCAAGGAAGCATCCTCGGGGTGATAACATACAGGTATAG

Protein Analysis

479

Amino Acids

51.9

Weight (kDa)

9.55

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 951
AccB1I GGYRCC 1 cut(s) 464
AccB7I CCANNNNNTGG 1 cut(s) 728
AciI CCGC 9 cut(s) 177, 183, 199, 244, 271, 333, 686, 716, 840
AcoI YGGCCR 2 cut(s) 735, 942
AcsI RAATTY 1 cut(s) 1011
AfaI GTAC 2 cut(s) 196, 1239
AfeI AGCGCT 2 cut(s) 59, 158
AfiI CCNNNNNNNGG 4 cut(s) 461, 722, 728, 1394
AgsI TTSAA 5 cut(s) 22, 100, 241, 1196, 1357
AjnI CCWGG 4 cut(s) 459, 721, 769, 802
AloI GAACNNNNNNTCC 2 cut(s) 1323, 1355
AluBI AGCT 6 cut(s) 41, 49, 1048, 1118, 1226, 1247
AluI AGCT 6 cut(s) 41, 49, 1048, 1118, 1226, 1247
Alw21I GWGCWC 2 cut(s) 936, 1068
Alw26I GTCTC 4 cut(s) 82, 126, 717, 816
Ama87I CYCGRG 2 cut(s) 751, 1413
Aor51HI AGCGCT 2 cut(s) 59, 158
ApaI GGGCCC 2 cut(s) 758, 1079
ApeKI GCWGC 5 cut(s) 55, 531, 591, 1223, 1244
ApoI RAATTY 1 cut(s) 1011
AspLEI GCGC 3 cut(s) 60, 159, 536
AspS9I GGNCC 8 cut(s) 169, 250, 394, 688, 754, 755, 1075, 1076
AsuC2I CCSGG 3 cut(s) 752, 753, 1090
AsuHPI GGTGA 2 cut(s) 481, 1430
AvaI CYCGRG 2 cut(s) 751, 1413
AvaII GGWCC 3 cut(s) 169, 250, 688
AxyI CCTNAGG 1 cut(s) 873
BaeGI GKGCMC 4 cut(s) 467, 758, 801, 1079
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 3 cut(s) 621, 758, 1079
BbsI GAAGAC 1 cut(s) 1100
Bbv12I GWGCWC 2 cut(s) 936, 1068
BbvCI CCTCAGC 1 cut(s) 641
BbvI GCAGC 5 cut(s) 67, 543, 603, 1235, 1256
BccI CCATC 2 cut(s) 129, 1066
BceAI ACGGC 3 cut(s) 190, 722, 929
BciT130I CCWGG 4 cut(s) 461, 723, 771, 804
BcnI CCSGG 3 cut(s) 752, 753, 1090
BcoDI GTCTC 4 cut(s) 82, 126, 717, 816
BfaI CTAG 3 cut(s) 810, 1049, 1115
BfmI CTRYAG 2 cut(s) 149, 1374
BfoI RGCGCY 3 cut(s) 61, 160, 537
BglI GCCNNNNNGGC 2 cut(s) 683, 1083
BglII AGATCT 1 cut(s) 879
BisI GCNGC 8 cut(s) 56, 178, 271, 333, 532, 592, 1224, 1245
BlsI GCNGC 8 cut(s) 57, 179, 272, 334, 533, 593, 1225, 1246
Bme1390I CCNGG 7 cut(s) 461, 723, 752, 753, 771, 804, 1090
Bme18I GGWCC 3 cut(s) 169, 250, 688
BmeT110I CYCGRG 2 cut(s) 751, 1413
BmgT120I GGNCC 8 cut(s) 169, 250, 394, 688, 754, 755, 1075, 1076
BmiI GGNNCC 8 cut(s) 170, 181, 466, 690, 756, 844, 1077, 1087
BmrFI CCNGG 7 cut(s) 461, 723, 752, 753, 771, 804, 1090
BmsI GCATC 3 cut(s) 805, 1141, 1417
BoxI GACNNNNGTC 1 cut(s) 74
BpiI GAAGAC 1 cut(s) 1100
BpmI CTGGAG 4 cut(s) 35, 443, 792, 840
Bpu10I CCTNAGC 1 cut(s) 641
BpuMI CCSGG 3 cut(s) 752, 753, 1090
BsaI GGTCTC 1 cut(s) 82
BsaXI ACNNNNNCTCC 8 cut(s) 164, 194, 765, 795, 1176, 1206, 1323, 1353
Bsc4I CCNNNNNNNGG 4 cut(s) 461, 722, 728, 1394
Bse1I ACTGG 3 cut(s) 707, 738, 1087
Bse21I CCTNAGG 1 cut(s) 873
Bse3DI GCAATG 2 cut(s) 733, 1066
BseBI CCWGG 4 cut(s) 461, 723, 771, 804
BseGI GGATG 2 cut(s) 820, 1408
BseLI CCNNNNNNNGG 4 cut(s) 461, 722, 728, 1394
BseMI GCAATG 2 cut(s) 733, 1066
BseMII CTCAG 8 cut(s) 80, 86, 366, 632, 687, 1218, 1290, 1380
BseNI ACTGG 3 cut(s) 707, 738, 1087
BseRI GAGGAG 9 cut(s) 245, 285, 288, 496, 499, 502, 505, 508, 618
BseSI GKGCMC 4 cut(s) 467, 758, 801, 1079
BseXI GCAGC 5 cut(s) 67, 543, 603, 1235, 1256
Bsh1285I CGRYCG 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 464
BsiEI CGRYCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 936, 1068
BsiHKCI CYCGRG 2 cut(s) 751, 1413
BsiSI CCGG 2 cut(s) 752, 1089
BslFI GGGAC 4 cut(s) 182, 210, 556, 820
BslI CCNNNNNNNGG 4 cut(s) 461, 722, 728, 1394
BsmAI GTCTC 4 cut(s) 82, 126, 717, 816
BsmBI CGTCTC 1 cut(s) 717
BsmFI GGGAC 4 cut(s) 182, 210, 556, 820
BsmI GAATGC 1 cut(s) 835
Bso31I GGTCTC 1 cut(s) 82
BsoBI CYCGRG 2 cut(s) 751, 1413
Bsp120I GGGCCC 2 cut(s) 754, 1075
Bsp1286I GDGCHC 7 cut(s) 467, 621, 758, 801, 936, 1068, 1079
Bsp1407I TGTACA 1 cut(s) 1237
Bsp143I GATC 2 cut(s) 265, 879
BspACI CCGC 9 cut(s) 177, 183, 199, 244, 271, 333, 686, 716, 840
BspCNI CTCAG 8 cut(s) 79, 85, 367, 633, 688, 1219, 1291, 1381
BspLI GGNNCC 8 cut(s) 170, 181, 466, 690, 756, 844, 1077, 1087
BspMAI CTGCAG 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 733, 1066
BsrGI TGTACA 1 cut(s) 1237
BsrI ACTGG 3 cut(s) 707, 738, 1087
BssMI GATC 2 cut(s) 265, 879
BssT1I CCWWGG 2 cut(s) 321, 327
Bst2UI CCWGG 4 cut(s) 461, 723, 771, 804
Bst6I CTCTTC 2 cut(s) 263, 526
BstAPI GCANNNNNTGC 1 cut(s) 353
BstAUI TGTACA 1 cut(s) 1237
BstC8I GCNNGC 3 cut(s) 1104, 1120, 1347
BstDEI CTNAG 9 cut(s) 66, 72, 375, 641, 696, 873, 1227, 1299, 1389
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 820, 1408
BstH2I RGCGCY 3 cut(s) 61, 160, 537
BstHHI GCGC 3 cut(s) 60, 159, 536
BstKTI GATC 2 cut(s) 268, 882
BstMAI GTCTC 4 cut(s) 82, 126, 717, 816
BstMBI GATC 2 cut(s) 265, 879
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 6 cut(s) 55, 332, 353, 414, 683, 1083
BstNI CCWGG 4 cut(s) 461, 723, 771, 804
BstPAI GACNNNNGTC 1 cut(s) 74
BstSCI CCNGG 7 cut(s) 459, 721, 750, 751, 769, 802, 1088
BstSFI CTRYAG 2 cut(s) 149, 1374
BstSLI GKGCMC 4 cut(s) 467, 758, 801, 1079
BstV1I GCAGC 5 cut(s) 67, 543, 603, 1235, 1256
BstV2I GAAGAC 1 cut(s) 1100
BstX2I RGATCY 1 cut(s) 879
BstYI RGATCY 1 cut(s) 879
Bsu36I CCTNAGG 1 cut(s) 873
BtgI CCRYGG 1 cut(s) 172
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 2 cut(s) 820, 1408
Cac8I GCNNGC 3 cut(s) 1104, 1120, 1347
CfoI GCGC 3 cut(s) 60, 159, 536
Cfr13I GGNCC 8 cut(s) 169, 250, 394, 688, 754, 755, 1075, 1076
Cfr9I CCCGGG 1 cut(s) 751
Csp6I GTAC 2 cut(s) 195, 1238
CviAII CATG 1 cut(s) 247
CviQI GTAC 2 cut(s) 195, 1238
DdeI CTNAG 9 cut(s) 66, 72, 375, 641, 696, 873, 1227, 1299, 1389
DpnI GATC 2 cut(s) 267, 881
DpnII GATC 2 cut(s) 265, 879
DraI TTTAAA 1 cut(s) 1308
EaeI YGGCCR 2 cut(s) 735, 942
Eam1104I CTCTTC 2 cut(s) 263, 526
EarI CTCTTC 2 cut(s) 263, 526
EciI GGCGGA 3 cut(s) 172, 701, 705
Eco130I CCWWGG 2 cut(s) 321, 327
Eco24I GRGCYC 3 cut(s) 621, 758, 1079
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 3 cut(s) 169, 250, 688
Eco47III AGCGCT 2 cut(s) 59, 158
Eco81I CCTNAGG 1 cut(s) 873
Eco88I CYCGRG 2 cut(s) 751, 1413
EcoO109I RGGNCCY 2 cut(s) 394, 755
EcoRI GAATTC 1 cut(s) 1011
EcoRII CCWGG 4 cut(s) 459, 721, 769, 802
EcoT14I CCWWGG 2 cut(s) 321, 327
EcoT38I GRGCYC 3 cut(s) 621, 758, 1079
ErhI CCWWGG 2 cut(s) 321, 327
Esp3I CGTCTC 1 cut(s) 717
FaeI CATG 1 cut(s) 250
FaqI GGGAC 4 cut(s) 182, 210, 556, 820
FatI CATG 1 cut(s) 246
FauI CCCGC 1 cut(s) 206
FauNDI CATATG 1 cut(s) 673
Fnu4HI GCNGC 8 cut(s) 56, 178, 271, 333, 532, 592, 1224, 1245
FokI GGATG 2 cut(s) 827, 1395
FriOI GRGCYC 3 cut(s) 621, 758, 1079
Fsp4HI GCNGC 8 cut(s) 56, 178, 271, 333, 532, 592, 1224, 1245
FspBI CTAG 3 cut(s) 810, 1049, 1115
GlaI GCGC 3 cut(s) 59, 158, 535
GluI GCNGC 8 cut(s) 56, 178, 271, 333, 532, 592, 1224, 1245
GsuI CTGGAG 4 cut(s) 35, 443, 792, 840
HaeII RGCGCY 3 cut(s) 61, 160, 537
HapII CCGG 2 cut(s) 752, 1089
HhaI GCGC 3 cut(s) 60, 159, 536
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 3 cut(s) 58, 157, 534
HinP1I GCGC 3 cut(s) 58, 157, 534
HincII GTYRAC 1 cut(s) 1279
HindII GTYRAC 1 cut(s) 1279
HinfI GANTC 8 cut(s) 70, 134, 311, 371, 379, 611, 1004, 1196
HpaII CCGG 2 cut(s) 752, 1089
HphI GGTGA 2 cut(s) 481, 1430
Hpy166II GTNNAC 2 cut(s) 1264, 1279
Hpy188I TCNGA 9 cut(s) 69, 146, 209, 265, 370, 376, 437, 556, 616
Hpy188III TCNNGA 9 cut(s) 6, 360, 582, 893, 996, 1008, 1069, 1329, 1388
Hpy8I GTNNAC 2 cut(s) 1264, 1279
Hpy99I CGWCG 1 cut(s) 132
HpyAV CCTTC 6 cut(s) 19, 148, 300, 478, 1361, 1387
HpyCH4V TGCA 8 cut(s) 151, 347, 417, 742, 885, 1106, 1154, 1400
HpyF10VI GCNNNNNNNGC 6 cut(s) 55, 332, 353, 414, 683, 1083
HpyF3I CTNAG 9 cut(s) 66, 72, 375, 641, 696, 873, 1227, 1299, 1389
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 3 cut(s) 58, 157, 534
Kzo9I GATC 2 cut(s) 265, 879
LmnI GCTCC 9 cut(s) 46, 54, 154, 185, 457, 605, 998, 1045, 1091
Lsp1109I GCAGC 5 cut(s) 67, 543, 603, 1235, 1256
LweI GCATC 3 cut(s) 805, 1141, 1417
MaeI CTAG 3 cut(s) 810, 1049, 1115
MalI GATC 2 cut(s) 267, 881
MboI GATC 2 cut(s) 265, 879
MboII GAAGA 6 cut(s) 34, 250, 513, 570, 1105, 1199
MfeI CAATTG 2 cut(s) 220, 412
MflI RGATCY 1 cut(s) 879
MhlI GDGCHC 7 cut(s) 467, 621, 758, 801, 936, 1068, 1079
MluCI AATT 5 cut(s) 220, 412, 847, 859, 1011
MlyI GAGTC 3 cut(s) 64, 128, 365
MmeI TCCRAC 2 cut(s) 460, 1162
MseI TTAA 5 cut(s) 777, 983, 1163, 1233, 1307
MspA1I CMGCKG 1 cut(s) 1226
MspI CCGG 2 cut(s) 752, 1089
MspR9I CCNGG 7 cut(s) 461, 723, 752, 753, 771, 804, 1090
MssI GTTTAAAC 1 cut(s) 1308
MunI CAATTG 2 cut(s) 220, 412
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 4 cut(s) 461, 723, 771, 804
MwoI GCNNNNNNNGC 6 cut(s) 55, 332, 353, 414, 683, 1083
NciI CCSGG 3 cut(s) 752, 753, 1090
NdeI CATATG 1 cut(s) 673
NdeII GATC 2 cut(s) 265, 879
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 8 cut(s) 170, 181, 466, 690, 756, 844, 1077, 1087
NmeAIII GCCGAG 1 cut(s) 238
PasI CCCWGGG 1 cut(s) 803
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 5 cut(s) 311, 379, 611, 1004, 1196
PflMI CCANNNNNTGG 1 cut(s) 728
PfoI TCCNGGA 1 cut(s) 1088
PkrI GCNGC 8 cut(s) 57, 179, 272, 334, 533, 593, 1225, 1246
Ple19I CGATCG 1 cut(s) 268
PleI GAGTC 3 cut(s) 64, 128, 365
PmeI GTTTAAAC 1 cut(s) 1308
PpsI GAGTC 3 cut(s) 64, 128, 365
PshAI GACNNNNGTC 1 cut(s) 74
PsiI TTATAA 1 cut(s) 951
Psp6I CCWGG 4 cut(s) 459, 721, 769, 802
PspGI CCWGG 4 cut(s) 459, 721, 769, 802
PspN4I GGNNCC 8 cut(s) 170, 181, 466, 690, 756, 844, 1077, 1087
PspOMI GGGCCC 2 cut(s) 754, 1075
PspPI GGNCC 8 cut(s) 169, 250, 394, 688, 754, 755, 1075, 1076
PstI CTGCAG 1 cut(s) 153
PsuI RGATCY 1 cut(s) 879
PvuI CGATCG 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 1226
RsaI GTAC 2 cut(s) 196, 1239
RsaNI GTAC 2 cut(s) 195, 1238
SaqAI TTAA 5 cut(s) 777, 983, 1163, 1233, 1307
SatI GCNGC 8 cut(s) 56, 178, 271, 333, 532, 592, 1224, 1245
Sau3AI GATC 2 cut(s) 265, 879
Sau96I GGNCC 8 cut(s) 169, 250, 394, 688, 754, 755, 1075, 1076
SchI GAGTC 3 cut(s) 64, 128, 365
ScrFI CCNGG 7 cut(s) 461, 723, 752, 753, 771, 804, 1090
SduI GDGCHC 7 cut(s) 467, 621, 758, 801, 936, 1068, 1079
SfaNI GCATC 3 cut(s) 805, 1141, 1417
SfcI CTRYAG 2 cut(s) 149, 1374
SinI GGWCC 3 cut(s) 169, 250, 688
SmaI CCCGGG 1 cut(s) 753
Sse9I AATT 5 cut(s) 220, 412, 847, 859, 1011
SsiI CCGC 9 cut(s) 177, 183, 199, 244, 271, 333, 686, 716, 840
SspI AATATT 1 cut(s) 1203
SspMI CTAG 3 cut(s) 810, 1049, 1115
StyD4I CCNGG 7 cut(s) 459, 721, 750, 751, 769, 802, 1088
StyI CCWWGG 2 cut(s) 321, 327
TaqI TCGA 1 cut(s) 1365
TasI AATT 5 cut(s) 220, 412, 847, 859, 1011
TatI WGTACW 1 cut(s) 1237
TauI GCSGC 3 cut(s) 180, 273, 335
TfiI GAWTC 5 cut(s) 311, 379, 611, 1004, 1196
Tru1I TTAA 5 cut(s) 777, 983, 1163, 1233, 1307
Tru9I TTAA 5 cut(s) 777, 983, 1163, 1233, 1307
TseI GCWGC 5 cut(s) 55, 531, 591, 1223, 1244
TspDTI ATGAA 1 cut(s) 130
TspGWI ACGGA 2 cut(s) 615, 699
TspMI CCCGGG 1 cut(s) 751
Van91I CCANNNNNTGG 1 cut(s) 728
VpaK11BI GGWCC 3 cut(s) 169, 250, 688
XapI RAATTY 1 cut(s) 1011
XcmI CCANNNNNNNNNTGG 1 cut(s) 699
XmaI CCCGGG 1 cut(s) 751
XspI CTAG 3 cut(s) 810, 1049, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.