ATP-dependent Clp protease ATP-binding subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G33360 |
| fragaria_vesca | FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 |
| malus_domestica | MD00G1089200.v1.1 |
| prunus_persica | Prupe.8G000600_v2.0.a1 |
| pyrus_communis | pycom215g00140 |
| rosa_chinensis | RchiOBHm_Chr6g0249331 |
| rosa_laevigata | RLG00000015591 |
| rosa_roxburghii | Rroxscaffold_7G00217860 |
| rosa_rugosa | Rorug05G0490400 Rorug05G0490500.1 |
| rosa_samantha | Rh6AG001200 Rh6BG009100 Rh6CG000300 Rh6DG000200 |
| rosa_wichuraiana | Rw6G000180 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 951 |
| AccB1I | GGYRCC | 1 cut(s) | 464 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 728 |
| AciI | CCGC | 9 cut(s) | 177, 183, 199, 244, 271, 333, 686, 716, 840 |
| AcoI | YGGCCR | 2 cut(s) | 735, 942 |
| AcsI | RAATTY | 1 cut(s) | 1011 |
| AfaI | GTAC | 2 cut(s) | 196, 1239 |
| AfeI | AGCGCT | 2 cut(s) | 59, 158 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 461, 722, 728, 1394 |
| AgsI | TTSAA | 5 cut(s) | 22, 100, 241, 1196, 1357 |
| AjnI | CCWGG | 4 cut(s) | 459, 721, 769, 802 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1323, 1355 |
| AluBI | AGCT | 6 cut(s) | 41, 49, 1048, 1118, 1226, 1247 |
| AluI | AGCT | 6 cut(s) | 41, 49, 1048, 1118, 1226, 1247 |
| Alw21I | GWGCWC | 2 cut(s) | 936, 1068 |
| Alw26I | GTCTC | 4 cut(s) | 82, 126, 717, 816 |
| Ama87I | CYCGRG | 2 cut(s) | 751, 1413 |
| Aor51HI | AGCGCT | 2 cut(s) | 59, 158 |
| ApaI | GGGCCC | 2 cut(s) | 758, 1079 |
| ApeKI | GCWGC | 5 cut(s) | 55, 531, 591, 1223, 1244 |
| ApoI | RAATTY | 1 cut(s) | 1011 |
| AspLEI | GCGC | 3 cut(s) | 60, 159, 536 |
| AspS9I | GGNCC | 8 cut(s) | 169, 250, 394, 688, 754, 755, 1075, 1076 |
| AsuC2I | CCSGG | 3 cut(s) | 752, 753, 1090 |
| AsuHPI | GGTGA | 2 cut(s) | 481, 1430 |
| AvaI | CYCGRG | 2 cut(s) | 751, 1413 |
| AvaII | GGWCC | 3 cut(s) | 169, 250, 688 |
| AxyI | CCTNAGG | 1 cut(s) | 873 |
| BaeGI | GKGCMC | 4 cut(s) | 467, 758, 801, 1079 |
| BanI | GGYRCC | 1 cut(s) | 464 |
| BanII | GRGCYC | 3 cut(s) | 621, 758, 1079 |
| BbsI | GAAGAC | 1 cut(s) | 1100 |
| Bbv12I | GWGCWC | 2 cut(s) | 936, 1068 |
| BbvCI | CCTCAGC | 1 cut(s) | 641 |
| BbvI | GCAGC | 5 cut(s) | 67, 543, 603, 1235, 1256 |
| BccI | CCATC | 2 cut(s) | 129, 1066 |
| BceAI | ACGGC | 3 cut(s) | 190, 722, 929 |
| BciT130I | CCWGG | 4 cut(s) | 461, 723, 771, 804 |
| BcnI | CCSGG | 3 cut(s) | 752, 753, 1090 |
| BcoDI | GTCTC | 4 cut(s) | 82, 126, 717, 816 |
| BfaI | CTAG | 3 cut(s) | 810, 1049, 1115 |
| BfmI | CTRYAG | 2 cut(s) | 149, 1374 |
| BfoI | RGCGCY | 3 cut(s) | 61, 160, 537 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 683, 1083 |
| BglII | AGATCT | 1 cut(s) | 879 |
| BisI | GCNGC | 8 cut(s) | 56, 178, 271, 333, 532, 592, 1224, 1245 |
| BlsI | GCNGC | 8 cut(s) | 57, 179, 272, 334, 533, 593, 1225, 1246 |
| Bme1390I | CCNGG | 7 cut(s) | 461, 723, 752, 753, 771, 804, 1090 |
| Bme18I | GGWCC | 3 cut(s) | 169, 250, 688 |
| BmeT110I | CYCGRG | 2 cut(s) | 751, 1413 |
| BmgT120I | GGNCC | 8 cut(s) | 169, 250, 394, 688, 754, 755, 1075, 1076 |
| BmiI | GGNNCC | 8 cut(s) | 170, 181, 466, 690, 756, 844, 1077, 1087 |
| BmrFI | CCNGG | 7 cut(s) | 461, 723, 752, 753, 771, 804, 1090 |
| BmsI | GCATC | 3 cut(s) | 805, 1141, 1417 |
| BoxI | GACNNNNGTC | 1 cut(s) | 74 |
| BpiI | GAAGAC | 1 cut(s) | 1100 |
| BpmI | CTGGAG | 4 cut(s) | 35, 443, 792, 840 |
| Bpu10I | CCTNAGC | 1 cut(s) | 641 |
| BpuMI | CCSGG | 3 cut(s) | 752, 753, 1090 |
| BsaI | GGTCTC | 1 cut(s) | 82 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 164, 194, 765, 795, 1176, 1206, 1323, 1353 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 461, 722, 728, 1394 |
| Bse1I | ACTGG | 3 cut(s) | 707, 738, 1087 |
| Bse21I | CCTNAGG | 1 cut(s) | 873 |
| Bse3DI | GCAATG | 2 cut(s) | 733, 1066 |
| BseBI | CCWGG | 4 cut(s) | 461, 723, 771, 804 |
| BseGI | GGATG | 2 cut(s) | 820, 1408 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 461, 722, 728, 1394 |
| BseMI | GCAATG | 2 cut(s) | 733, 1066 |
| BseMII | CTCAG | 8 cut(s) | 80, 86, 366, 632, 687, 1218, 1290, 1380 |
| BseNI | ACTGG | 3 cut(s) | 707, 738, 1087 |
| BseRI | GAGGAG | 9 cut(s) | 245, 285, 288, 496, 499, 502, 505, 508, 618 |
| BseSI | GKGCMC | 4 cut(s) | 467, 758, 801, 1079 |
| BseXI | GCAGC | 5 cut(s) | 67, 543, 603, 1235, 1256 |
| Bsh1285I | CGRYCG | 1 cut(s) | 268 |
| BshNI | GGYRCC | 1 cut(s) | 464 |
| BsiEI | CGRYCG | 1 cut(s) | 268 |
| BsiHKAI | GWGCWC | 2 cut(s) | 936, 1068 |
| BsiHKCI | CYCGRG | 2 cut(s) | 751, 1413 |
| BsiSI | CCGG | 2 cut(s) | 752, 1089 |
| BslFI | GGGAC | 4 cut(s) | 182, 210, 556, 820 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 461, 722, 728, 1394 |
| BsmAI | GTCTC | 4 cut(s) | 82, 126, 717, 816 |
| BsmBI | CGTCTC | 1 cut(s) | 717 |
| BsmFI | GGGAC | 4 cut(s) | 182, 210, 556, 820 |
| BsmI | GAATGC | 1 cut(s) | 835 |
| Bso31I | GGTCTC | 1 cut(s) | 82 |
| BsoBI | CYCGRG | 2 cut(s) | 751, 1413 |
| Bsp120I | GGGCCC | 2 cut(s) | 754, 1075 |
| Bsp1286I | GDGCHC | 7 cut(s) | 467, 621, 758, 801, 936, 1068, 1079 |
| Bsp1407I | TGTACA | 1 cut(s) | 1237 |
| Bsp143I | GATC | 2 cut(s) | 265, 879 |
| BspACI | CCGC | 9 cut(s) | 177, 183, 199, 244, 271, 333, 686, 716, 840 |
| BspCNI | CTCAG | 8 cut(s) | 79, 85, 367, 633, 688, 1219, 1291, 1381 |
| BspLI | GGNNCC | 8 cut(s) | 170, 181, 466, 690, 756, 844, 1077, 1087 |
| BspMAI | CTGCAG | 1 cut(s) | 153 |
| BspT107I | GGYRCC | 1 cut(s) | 464 |
| BspTNI | GGTCTC | 1 cut(s) | 82 |
| BsrDI | GCAATG | 2 cut(s) | 733, 1066 |
| BsrGI | TGTACA | 1 cut(s) | 1237 |
| BsrI | ACTGG | 3 cut(s) | 707, 738, 1087 |
| BssMI | GATC | 2 cut(s) | 265, 879 |
| BssT1I | CCWWGG | 2 cut(s) | 321, 327 |
| Bst2UI | CCWGG | 4 cut(s) | 461, 723, 771, 804 |
| Bst6I | CTCTTC | 2 cut(s) | 263, 526 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 353 |
| BstAUI | TGTACA | 1 cut(s) | 1237 |
| BstC8I | GCNNGC | 3 cut(s) | 1104, 1120, 1347 |
| BstDEI | CTNAG | 9 cut(s) | 66, 72, 375, 641, 696, 873, 1227, 1299, 1389 |
| BstDSI | CCRYGG | 1 cut(s) | 172 |
| BstF5I | GGATG | 2 cut(s) | 820, 1408 |
| BstH2I | RGCGCY | 3 cut(s) | 61, 160, 537 |
| BstHHI | GCGC | 3 cut(s) | 60, 159, 536 |
| BstKTI | GATC | 2 cut(s) | 268, 882 |
| BstMAI | GTCTC | 4 cut(s) | 82, 126, 717, 816 |
| BstMBI | GATC | 2 cut(s) | 265, 879 |
| BstMCI | CGRYCG | 1 cut(s) | 268 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 55, 332, 353, 414, 683, 1083 |
| BstNI | CCWGG | 4 cut(s) | 461, 723, 771, 804 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 74 |
| BstSCI | CCNGG | 7 cut(s) | 459, 721, 750, 751, 769, 802, 1088 |
| BstSFI | CTRYAG | 2 cut(s) | 149, 1374 |
| BstSLI | GKGCMC | 4 cut(s) | 467, 758, 801, 1079 |
| BstV1I | GCAGC | 5 cut(s) | 67, 543, 603, 1235, 1256 |
| BstV2I | GAAGAC | 1 cut(s) | 1100 |
| BstX2I | RGATCY | 1 cut(s) | 879 |
| BstYI | RGATCY | 1 cut(s) | 879 |
| Bsu36I | CCTNAGG | 1 cut(s) | 873 |
| BtgI | CCRYGG | 1 cut(s) | 172 |
| BtgZI | GCGATG | 1 cut(s) | 107 |
| BtsCI | GGATG | 2 cut(s) | 820, 1408 |
| Cac8I | GCNNGC | 3 cut(s) | 1104, 1120, 1347 |
| CfoI | GCGC | 3 cut(s) | 60, 159, 536 |
| Cfr13I | GGNCC | 8 cut(s) | 169, 250, 394, 688, 754, 755, 1075, 1076 |
| Cfr9I | CCCGGG | 1 cut(s) | 751 |
| Csp6I | GTAC | 2 cut(s) | 195, 1238 |
| CviAII | CATG | 1 cut(s) | 247 |
| CviQI | GTAC | 2 cut(s) | 195, 1238 |
| DdeI | CTNAG | 9 cut(s) | 66, 72, 375, 641, 696, 873, 1227, 1299, 1389 |
| DpnI | GATC | 2 cut(s) | 267, 881 |
| DpnII | GATC | 2 cut(s) | 265, 879 |
| DraI | TTTAAA | 1 cut(s) | 1308 |
| EaeI | YGGCCR | 2 cut(s) | 735, 942 |
| Eam1104I | CTCTTC | 2 cut(s) | 263, 526 |
| EarI | CTCTTC | 2 cut(s) | 263, 526 |
| EciI | GGCGGA | 3 cut(s) | 172, 701, 705 |
| Eco130I | CCWWGG | 2 cut(s) | 321, 327 |
| Eco24I | GRGCYC | 3 cut(s) | 621, 758, 1079 |
| Eco31I | GGTCTC | 1 cut(s) | 82 |
| Eco47I | GGWCC | 3 cut(s) | 169, 250, 688 |
| Eco47III | AGCGCT | 2 cut(s) | 59, 158 |
| Eco81I | CCTNAGG | 1 cut(s) | 873 |
| Eco88I | CYCGRG | 2 cut(s) | 751, 1413 |
| EcoO109I | RGGNCCY | 2 cut(s) | 394, 755 |
| EcoRI | GAATTC | 1 cut(s) | 1011 |
| EcoRII | CCWGG | 4 cut(s) | 459, 721, 769, 802 |
| EcoT14I | CCWWGG | 2 cut(s) | 321, 327 |
| EcoT38I | GRGCYC | 3 cut(s) | 621, 758, 1079 |
| ErhI | CCWWGG | 2 cut(s) | 321, 327 |
| Esp3I | CGTCTC | 1 cut(s) | 717 |
| FaeI | CATG | 1 cut(s) | 250 |
| FaqI | GGGAC | 4 cut(s) | 182, 210, 556, 820 |
| FatI | CATG | 1 cut(s) | 246 |
| FauI | CCCGC | 1 cut(s) | 206 |
| FauNDI | CATATG | 1 cut(s) | 673 |
| Fnu4HI | GCNGC | 8 cut(s) | 56, 178, 271, 333, 532, 592, 1224, 1245 |
| FokI | GGATG | 2 cut(s) | 827, 1395 |
| FriOI | GRGCYC | 3 cut(s) | 621, 758, 1079 |
| Fsp4HI | GCNGC | 8 cut(s) | 56, 178, 271, 333, 532, 592, 1224, 1245 |
| FspBI | CTAG | 3 cut(s) | 810, 1049, 1115 |
| GlaI | GCGC | 3 cut(s) | 59, 158, 535 |
| GluI | GCNGC | 8 cut(s) | 56, 178, 271, 333, 532, 592, 1224, 1245 |
| GsuI | CTGGAG | 4 cut(s) | 35, 443, 792, 840 |
| HaeII | RGCGCY | 3 cut(s) | 61, 160, 537 |
| HapII | CCGG | 2 cut(s) | 752, 1089 |
| HhaI | GCGC | 3 cut(s) | 60, 159, 536 |
| Hin1II | CATG | 1 cut(s) | 250 |
| Hin6I | GCGC | 3 cut(s) | 58, 157, 534 |
| HinP1I | GCGC | 3 cut(s) | 58, 157, 534 |
| HincII | GTYRAC | 1 cut(s) | 1279 |
| HindII | GTYRAC | 1 cut(s) | 1279 |
| HinfI | GANTC | 8 cut(s) | 70, 134, 311, 371, 379, 611, 1004, 1196 |
| HpaII | CCGG | 2 cut(s) | 752, 1089 |
| HphI | GGTGA | 2 cut(s) | 481, 1430 |
| Hpy166II | GTNNAC | 2 cut(s) | 1264, 1279 |
| Hpy188I | TCNGA | 9 cut(s) | 69, 146, 209, 265, 370, 376, 437, 556, 616 |
| Hpy188III | TCNNGA | 9 cut(s) | 6, 360, 582, 893, 996, 1008, 1069, 1329, 1388 |
| Hpy8I | GTNNAC | 2 cut(s) | 1264, 1279 |
| Hpy99I | CGWCG | 1 cut(s) | 132 |
| HpyAV | CCTTC | 6 cut(s) | 19, 148, 300, 478, 1361, 1387 |
| HpyCH4V | TGCA | 8 cut(s) | 151, 347, 417, 742, 885, 1106, 1154, 1400 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 55, 332, 353, 414, 683, 1083 |
| HpyF3I | CTNAG | 9 cut(s) | 66, 72, 375, 641, 696, 873, 1227, 1299, 1389 |
| Hsp92II | CATG | 1 cut(s) | 250 |
| HspAI | GCGC | 3 cut(s) | 58, 157, 534 |
| Kzo9I | GATC | 2 cut(s) | 265, 879 |
| LmnI | GCTCC | 9 cut(s) | 46, 54, 154, 185, 457, 605, 998, 1045, 1091 |
| Lsp1109I | GCAGC | 5 cut(s) | 67, 543, 603, 1235, 1256 |
| LweI | GCATC | 3 cut(s) | 805, 1141, 1417 |
| MaeI | CTAG | 3 cut(s) | 810, 1049, 1115 |
| MalI | GATC | 2 cut(s) | 267, 881 |
| MboI | GATC | 2 cut(s) | 265, 879 |
| MboII | GAAGA | 6 cut(s) | 34, 250, 513, 570, 1105, 1199 |
| MfeI | CAATTG | 2 cut(s) | 220, 412 |
| MflI | RGATCY | 1 cut(s) | 879 |
| MhlI | GDGCHC | 7 cut(s) | 467, 621, 758, 801, 936, 1068, 1079 |
| MluCI | AATT | 5 cut(s) | 220, 412, 847, 859, 1011 |
| MlyI | GAGTC | 3 cut(s) | 64, 128, 365 |
| MmeI | TCCRAC | 2 cut(s) | 460, 1162 |
| MseI | TTAA | 5 cut(s) | 777, 983, 1163, 1233, 1307 |
| MspA1I | CMGCKG | 1 cut(s) | 1226 |
| MspI | CCGG | 2 cut(s) | 752, 1089 |
| MspR9I | CCNGG | 7 cut(s) | 461, 723, 752, 753, 771, 804, 1090 |
| MssI | GTTTAAAC | 1 cut(s) | 1308 |
| MunI | CAATTG | 2 cut(s) | 220, 412 |
| Mva1269I | GAATGC | 1 cut(s) | 835 |
| MvaI | CCWGG | 4 cut(s) | 461, 723, 771, 804 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 55, 332, 353, 414, 683, 1083 |
| NciI | CCSGG | 3 cut(s) | 752, 753, 1090 |
| NdeI | CATATG | 1 cut(s) | 673 |
| NdeII | GATC | 2 cut(s) | 265, 879 |
| NlaIII | CATG | 1 cut(s) | 250 |
| NlaIV | GGNNCC | 8 cut(s) | 170, 181, 466, 690, 756, 844, 1077, 1087 |
| NmeAIII | GCCGAG | 1 cut(s) | 238 |
| PasI | CCCWGGG | 1 cut(s) | 803 |
| PctI | GAATGC | 1 cut(s) | 835 |
| PfeI | GAWTC | 5 cut(s) | 311, 379, 611, 1004, 1196 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 728 |
| PfoI | TCCNGGA | 1 cut(s) | 1088 |
| PkrI | GCNGC | 8 cut(s) | 57, 179, 272, 334, 533, 593, 1225, 1246 |
| Ple19I | CGATCG | 1 cut(s) | 268 |
| PleI | GAGTC | 3 cut(s) | 64, 128, 365 |
| PmeI | GTTTAAAC | 1 cut(s) | 1308 |
| PpsI | GAGTC | 3 cut(s) | 64, 128, 365 |
| PshAI | GACNNNNGTC | 1 cut(s) | 74 |
| PsiI | TTATAA | 1 cut(s) | 951 |
| Psp6I | CCWGG | 4 cut(s) | 459, 721, 769, 802 |
| PspGI | CCWGG | 4 cut(s) | 459, 721, 769, 802 |
| PspN4I | GGNNCC | 8 cut(s) | 170, 181, 466, 690, 756, 844, 1077, 1087 |
| PspOMI | GGGCCC | 2 cut(s) | 754, 1075 |
| PspPI | GGNCC | 8 cut(s) | 169, 250, 394, 688, 754, 755, 1075, 1076 |
| PstI | CTGCAG | 1 cut(s) | 153 |
| PsuI | RGATCY | 1 cut(s) | 879 |
| PvuI | CGATCG | 1 cut(s) | 268 |
| PvuII | CAGCTG | 1 cut(s) | 1226 |
| RsaI | GTAC | 2 cut(s) | 196, 1239 |
| RsaNI | GTAC | 2 cut(s) | 195, 1238 |
| SaqAI | TTAA | 5 cut(s) | 777, 983, 1163, 1233, 1307 |
| SatI | GCNGC | 8 cut(s) | 56, 178, 271, 333, 532, 592, 1224, 1245 |
| Sau3AI | GATC | 2 cut(s) | 265, 879 |
| Sau96I | GGNCC | 8 cut(s) | 169, 250, 394, 688, 754, 755, 1075, 1076 |
| SchI | GAGTC | 3 cut(s) | 64, 128, 365 |
| ScrFI | CCNGG | 7 cut(s) | 461, 723, 752, 753, 771, 804, 1090 |
| SduI | GDGCHC | 7 cut(s) | 467, 621, 758, 801, 936, 1068, 1079 |
| SfaNI | GCATC | 3 cut(s) | 805, 1141, 1417 |
| SfcI | CTRYAG | 2 cut(s) | 149, 1374 |
| SinI | GGWCC | 3 cut(s) | 169, 250, 688 |
| SmaI | CCCGGG | 1 cut(s) | 753 |
| Sse9I | AATT | 5 cut(s) | 220, 412, 847, 859, 1011 |
| SsiI | CCGC | 9 cut(s) | 177, 183, 199, 244, 271, 333, 686, 716, 840 |
| SspI | AATATT | 1 cut(s) | 1203 |
| SspMI | CTAG | 3 cut(s) | 810, 1049, 1115 |
| StyD4I | CCNGG | 7 cut(s) | 459, 721, 750, 751, 769, 802, 1088 |
| StyI | CCWWGG | 2 cut(s) | 321, 327 |
| TaqI | TCGA | 1 cut(s) | 1365 |
| TasI | AATT | 5 cut(s) | 220, 412, 847, 859, 1011 |
| TatI | WGTACW | 1 cut(s) | 1237 |
| TauI | GCSGC | 3 cut(s) | 180, 273, 335 |
| TfiI | GAWTC | 5 cut(s) | 311, 379, 611, 1004, 1196 |
| Tru1I | TTAA | 5 cut(s) | 777, 983, 1163, 1233, 1307 |
| Tru9I | TTAA | 5 cut(s) | 777, 983, 1163, 1233, 1307 |
| TseI | GCWGC | 5 cut(s) | 55, 531, 591, 1223, 1244 |
| TspDTI | ATGAA | 1 cut(s) | 130 |
| TspGWI | ACGGA | 2 cut(s) | 615, 699 |
| TspMI | CCCGGG | 1 cut(s) | 751 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 728 |
| VpaK11BI | GGWCC | 3 cut(s) | 169, 250, 688 |
| XapI | RAATTY | 1 cut(s) | 1011 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 699 |
| XmaI | CCCGGG | 1 cut(s) | 751 |
| XspI | CTAG | 3 cut(s) | 810, 1049, 1115 |