Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0008310

Physical Location & Seq

Genomic Coordinates Forward (+)

305656 .. 315832

Gene Structure 10177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG001200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGTCTGGCATGTTGAGATGGCAGAAGCTAAAGCATATAGCACAGCTCCACCAGCGGTTCACTCAAGTATCCGCAATCTCCACGCACCTGCACCACTTCAATATCACTAGCCATCATCGCCGAAGAGAGTCTCTCATCGGAGTGCAGGCGCGCTACAAGTGGGATCACGGCGGCTCCGGCTCCGGCTCCGGCGACGCCCGCACCACCCGTAAAATCAGGGCAGAGGCCAACTGCCCGCGCTGCTCCTTCAACCGCATGGACCTCATCTTCTCCGATCGCCGCTTACCTAACTTATCCCCTCCTCCTCCGCCGGCGGAGGAGGCCGGGAAGAATGGCTCTGGTCTTCAGTATCAGGCCCTCAATCTCTGCCCCAATTGCAAGACCGCCTACTACTTCCGACCTCACCAGGTTGCTCCCCTCCAAGGCACTTTCGTGGAGATTGGGAGGCTCACCAACACTAACACAACCTCTTCCAATCGTAACGCCACCAAAATCAAAACCAATGGTTCCAATCCCAATACCACAAACGACGATACTAATGGCCTGAGGGCATCCTTCTGGGACACTCTGAGATCATATGCTAATGCTAATGGGGCGTCGGAGCCACCTGGCAATTGGCCTCAGCCTCCCCCTGGCAACGGACTTGCTGTGCATACGCCCCCGGGCCCCCCTTTTGCACCTGGAGTTAATGTCATTCGCGCTACTGGAGATGCAGATGCAGATGCTGGAGACAAGAAGACTGCCTGGGGCGGCTCCAGTTTGGGAAAGGATTTGCCCACTCCTAAGGAGATCTGCAAGGGTCTTGATAAGTTCGTTATTGGCCAACAAAGAGCCAAAAAGGTGCTTTCTGTTGCTGTTTATAACCACTACAAACGAATTTATCATGCCTCCTTGCACAAAGGGTCAGCAGCAGAATCAGGAAAACCAAACACAATAGATAAAGAAGATAATGTAGAGCTAGAAAAGAGCAATGTGCTCTTGATGGGCCCAACTGGATCTGGGAAGACGTTGCTTGCAAAAACACTAGCTCGATTTGTGAATGTGCCATTTGTCATTACTGATGCAACGAATTTAACACAGGCTGGTTATGTTGGGGAAGATGTCGAATCAATATTGCAAAAACTATTGGCGGCAGCTGACTTCAATGTACAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGTTTAAACATTAGCAGAGATGTTTCTGGAGAGGGTGTTCAGCAGGCTTTACTGAAAATGCTCGAAGGAACTATAGTGAACGTTCCTGAGAAGGGTGCGAGGAAGCATCCACGGGGTGATAACATACAGATAGATACGAAAGATATCCTTTTTATTTGTGGTGGAGCATTTGTAGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGTGCTCCTGTCCGTGCCAACATGAGAGCTGGTGGTGTAACCAACGCAATACTGACATCATCTTTACTTGAATCGGTTGAAAGTGCTGATCTCATTGCATATGGACTCATACCCGAGTTTATTGGACGTTTTGCAATATTAGTTAGTTTATCTGCTTTAACTGAAGACCAACTTGTTCAGGTACTGACGGAACCAAAAAATGCCCTTGGTAAGCAGTACAAGAAACTATTTAGCATGAACAATGTGAAGCTGCATTTCACAGACAAAGCACTAAGACTCATGGCAAAGAAAGCGATGGCTAAGAATACCGGTGCCAGGGGATTAAGATCGATATTGGAAAGTATTCTAACCGACGCCATGTATGAGATTCCGGATGTTAAAACAGGAGAAGATAGAGTAGATGCTGTAGTGGTTGATGAGGAGTCTGTGGATTCAGGAAATGCCCCTGGATGTGGAGGGAAGATTATTCGAGGGGACGGTGCATTGGAAAGATACCTTCGTGAAATAAAGTTGAAAGAATCAGTGGAGTATGTCGAGGTAGCTGAAGGGGAGTCGGAGGGAGAATCAGAACATTCCAGGGCTATGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

676

Amino Acids

73.39

Weight (kDa)

8.78

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	321 - 525	2.8e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	325 - 431	1.3e-15	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	532 - 601	7.7e-11	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33360
fragaria_vesca	FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040
malus_domestica	MD00G1089200.v1.1
prunus_persica	Prupe.8G000600_v2.0.a1
pyrus_communis	pycom215g00140
rosa_chinensis	RchiOBHm_Chr6g0249331
rosa_laevigata	RLG00000015591
rosa_roxburghii	Rroxscaffold_7G00217860
rosa_rugosa	Rorug05G0490400 Rorug05G0490500.1
rosa_samantha	Rh6AG001200 Rh6BG009100 Rh6CG000300 Rh6DG000200
rosa_wichuraiana	Rw6G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	861
AarI	CACCTGC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	1748
AccII	CGCG	3 cut(s)	151, 238, 699
AccIII	TCCGGA	1 cut(s)	1807
AclI	AACGTT	1 cut(s)	1293
AclWI	GGATC	2 cut(s)	171, 1003
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	2 cut(s)	876, 1069
AcuI	CTGAAG	3 cut(s)	329, 1620, 2001
AcyI	GRCGYC	3 cut(s)	195, 596, 1791
AdeI	CACNNNGTG	1 cut(s)	1328
AfaI	GTAC	3 cut(s)	1149, 1620, 1655
AfiI	CCNNNNNNNGG	6 cut(s)	422, 632, 638, 1304, 1752, 1889
AgeI	ACCGGT	1 cut(s)	1745
AgsI	TTSAA	7 cut(s)	100, 250, 1144, 1394, 1508, 1517, 1951
AjnI	CCWGG	8 cut(s)	405, 607, 631, 679, 743, 1751, 1882, 2012
AleI	CACNNNNGTG	1 cut(s)	431
AloI	GAACNNNNNNTCC	2 cut(s)	1233, 1265
AluBI	AGCT	9 cut(s)	28, 46, 958, 1028, 1136, 1157, 1466, 1687, 1979
AluI	AGCT	9 cut(s)	28, 46, 958, 1028, 1136, 1157, 1466, 1687, 1979
Alw21I	GWGCWC	2 cut(s)	978, 1444
Alw26I	GTCTC	3 cut(s)	135, 723, 1405
AlwI	GGATC	2 cut(s)	171, 1003
AlwNI	CAGNNNCTG	2 cut(s)	725, 1621
Ama87I	CYCGRG	2 cut(s)	661, 1550
Aor13HI	TCCGGA	1 cut(s)	1807
AoxI	GGCC	8 cut(s)	225, 321, 354, 541, 617, 664, 820, 985
ApaI	GGGCCC	2 cut(s)	668, 989
ApeKI	GCWGC	5 cut(s)	240, 908, 1133, 1154, 1687
ApoI	RAATTY	2 cut(s)	876, 1069
AsiGI	ACCGGT	1 cut(s)	1745
Asp700I	GAANNNNTTC	1 cut(s)	1779
AspLEI	GCGC	4 cut(s)	151, 153, 240, 701
AspS9I	GGNCC	6 cut(s)	259, 355, 664, 665, 985, 986
AsuC2I	CCSGG	3 cut(s)	325, 662, 663
AsuHPI	GGTGA	3 cut(s)	395, 442, 1340
AvaI	CYCGRG	2 cut(s)	661, 1550
AvaII	GGWCC	1 cut(s)	259
AxyI	CCTNAGG	2 cut(s)	545, 783
BaeGI	GKGCMC	2 cut(s)	668, 989
BaeI	ACNNNNGTAYC	4 cut(s)	51, 84, 1921, 1954
BalI	TGGCCA	1 cut(s)	822
BanI	GGYRCC	1 cut(s)	1748
BanII	GRGCYC	2 cut(s)	668, 989
BbsI	GAAGAC	4 cut(s)	335, 743, 1010, 1608
Bbv12I	GWGCWC	2 cut(s)	978, 1444
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	5 cut(s)	227, 920, 1145, 1166, 1674
BccI	CCATC	4 cut(s)	12, 120, 976, 1726
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	8 cut(s)	407, 609, 633, 681, 745, 1753, 1884, 2014
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	3 cut(s)	325, 662, 663
BcoDI	GTCTC	3 cut(s)	135, 723, 1405
BfaI	CTAG	3 cut(s)	108, 959, 1025
BfmI	CTRYAG	2 cut(s)	1284, 1842
BfuAI	ACCTGC	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	79
BglII	AGATCT	2 cut(s)	789, 1387
BisI	GCNGC	9 cut(s)	172, 241, 280, 751, 909, 1131, 1134, 1155, 1688
BlsI	GCNGC	9 cut(s)	173, 242, 281, 752, 910, 1132, 1135, 1156, 1689
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	2 cut(s)	661, 1550
BmgT120I	GGNCC	6 cut(s)	259, 355, 664, 665, 985, 986
BmsI	GCATC	7 cut(s)	560, 700, 706, 712, 1051, 1327, 1828
BpiI	GAAGAC	4 cut(s)	335, 743, 1010, 1608
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	5 cut(s)	702, 726, 739, 747, 1260
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	3 cut(s)	325, 662, 663
Bsa29I	ATCGAT	1 cut(s)	1766
BsaBI	GATNNNNATC	1 cut(s)	1762
BsaHI	GRCGYC	3 cut(s)	195, 596, 1791
BsaWI	WCCGGW	2 cut(s)	1745, 1807
BsaXI	ACNNNNNCTCC	8 cut(s)	158, 188, 675, 705, 1233, 1263, 1368, 1398
Bsc4I	CCNNNNNNNGG	6 cut(s)	422, 632, 638, 1304, 1752, 1889
Bse118I	RCCGGY	2 cut(s)	310, 1745
Bse1I	ACTGG	3 cut(s)	709, 756, 997
Bse21I	CCTNAGG	2 cut(s)	545, 783
Bse3DI	GCAATG	2 cut(s)	976, 1530
Bse8I	GATNNNNATC	1 cut(s)	1762
BseAI	TCCGGA	1 cut(s)	1807
BseBI	CCWGG	8 cut(s)	407, 609, 633, 681, 745, 1753, 1884, 2014
BseCI	ATCGAT	1 cut(s)	1766
BseGI	GGATG	4 cut(s)	551, 1318, 1816, 1892
BseJI	GATNNNNATC	1 cut(s)	1762
BseLI	CCNNNNNNNGG	6 cut(s)	422, 632, 638, 1304, 1752, 1889
BseMI	GCAATG	2 cut(s)	976, 1530
BseMII	CTCAG	5 cut(s)	536, 560, 635, 1200, 1290
BseNI	ACTGG	3 cut(s)	709, 756, 997
BsePI	GCGCGC	1 cut(s)	149
BseRI	GAGGAG	4 cut(s)	291, 294, 332, 1871
BseSI	GKGCMC	2 cut(s)	668, 989
BseXI	GCAGC	5 cut(s)	227, 920, 1145, 1166, 1674
BsgI	GTGCAG	2 cut(s)	74, 164
Bsh1236I	CGCG	3 cut(s)	151, 238, 699
Bsh1285I	CGRYCG	1 cut(s)	277
BshFI	GGCC	8 cut(s)	227, 323, 356, 543, 619, 666, 822, 987
BshNI	GGYRCC	1 cut(s)	1748
BshTI	ACCGGT	1 cut(s)	1745
BshVI	ATCGAT	1 cut(s)	1766
BsiEI	CGRYCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	978, 1444
BsiHKCI	CYCGRG	2 cut(s)	661, 1550
BsiSI	CCGG	8 cut(s)	177, 183, 189, 311, 324, 662, 1746, 1808
BslFI	GGGAC	2 cut(s)	575, 1925
BslI	CCNNNNNNNGG	6 cut(s)	422, 632, 638, 1304, 1752, 1889
BsmAI	GTCTC	3 cut(s)	135, 723, 1405
BsmBI	CGTCTC	1 cut(s)	1405
BsmFI	GGGAC	2 cut(s)	575, 1925
BsnI	GGCC	8 cut(s)	227, 323, 356, 543, 619, 666, 822, 987
BsoBI	CYCGRG	2 cut(s)	661, 1550
Bsp120I	GGGCCC	2 cut(s)	664, 985
Bsp1286I	GDGCHC	4 cut(s)	668, 978, 989, 1444
Bsp13I	TCCGGA	1 cut(s)	1807
Bsp1407I	TGTACA	1 cut(s)	1147
Bsp143I	GATC	8 cut(s)	163, 274, 572, 789, 995, 1387, 1525, 1763
BspANI	GGCC	8 cut(s)	227, 323, 356, 543, 619, 666, 822, 987
BspCNI	CTCAG	5 cut(s)	537, 561, 634, 1201, 1291
BspDI	ATCGAT	1 cut(s)	1766
BspEI	TCCGGA	1 cut(s)	1807
BspFNI	CGCG	3 cut(s)	151, 238, 699
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	171, 1003
BspT107I	GGYRCC	1 cut(s)	1748
BsrDI	GCAATG	2 cut(s)	976, 1530
BsrFI	RCCGGY	2 cut(s)	310, 1745
BsrGI	TGTACA	1 cut(s)	1147
BsrI	ACTGG	3 cut(s)	709, 756, 997
BssAI	RCCGGY	2 cut(s)	310, 1745
BssHII	GCGCGC	1 cut(s)	149
BssMI	GATC	8 cut(s)	163, 274, 572, 789, 995, 1387, 1525, 1763
BssNI	GRCGYC	3 cut(s)	195, 596, 1791
BssT1I	CCWWGG	2 cut(s)	421, 1642
Bst2UI	CCWGG	8 cut(s)	407, 609, 633, 681, 745, 1753, 1884, 2014
Bst4CI	ACNGT	1 cut(s)	1916
Bst6I	CTCTTC	2 cut(s)	118, 475
BstACI	GRCGYC	3 cut(s)	195, 596, 1791
BstAUI	TGTACA	1 cut(s)	1147
BstC8I	GCNNGC	7 cut(s)	147, 151, 199, 236, 312, 1014, 1257
BstDEI	CTNAG	9 cut(s)	545, 569, 621, 783, 1200, 1209, 1299, 1709, 1737
BstDSI	CCRYGG	1 cut(s)	1322
BstF5I	GGATG	4 cut(s)	551, 1318, 1816, 1892
BstFNI	CGCG	3 cut(s)	151, 238, 699
BstHHI	GCGC	4 cut(s)	151, 153, 240, 701
BstKTI	GATC	8 cut(s)	166, 277, 575, 792, 998, 1390, 1528, 1766
BstMAI	GTCTC	3 cut(s)	135, 723, 1405
BstMBI	GATC	8 cut(s)	163, 274, 572, 789, 995, 1387, 1525, 1763
BstMCI	CGRYCG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 198, 240, 320, 375, 593, 1727
BstNI	CCWGG	8 cut(s)	407, 609, 633, 681, 745, 1753, 1884, 2014
BstNSI	RCATGY	2 cut(s)	13, 2029
BstSFI	CTRYAG	2 cut(s)	1284, 1842
BstSLI	GKGCMC	2 cut(s)	668, 989
BstUI	CGCG	3 cut(s)	151, 238, 699
BstV1I	GCAGC	5 cut(s)	227, 920, 1145, 1166, 1674
BstV2I	GAAGAC	4 cut(s)	335, 743, 1010, 1608
BstX2I	RGATCY	3 cut(s)	789, 995, 1387
BstYI	RGATCY	3 cut(s)	789, 995, 1387
Bsu15I	ATCGAT	1 cut(s)	1766
Bsu36I	CCTNAGG	2 cut(s)	545, 783
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	8 cut(s)	227, 323, 356, 543, 619, 666, 822, 987
BsuTUI	ATCGAT	1 cut(s)	1766
BtgI	CCRYGG	1 cut(s)	1322
BtgZI	GCGATG	2 cut(s)	101, 1745
BtsCI	GGATG	4 cut(s)	551, 1318, 1816, 1892
BtsIMutI	CAGTG	1 cut(s)	1965
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	7 cut(s)	147, 151, 199, 236, 312, 1014, 1257
CaiI	CAGNNNCTG	2 cut(s)	725, 1621
CfoI	GCGC	4 cut(s)	151, 153, 240, 701
Cfr10I	RCCGGY	2 cut(s)	310, 1745
Cfr13I	GGNCC	6 cut(s)	259, 355, 664, 665, 985, 986
Cfr9I	CCCGGG	1 cut(s)	661
ClaI	ATCGAT	1 cut(s)	1766
CseI	GACGC	3 cut(s)	203, 585, 1799
CsiI	ACCWGGT	1 cut(s)	405
Csp6I	GTAC	3 cut(s)	1148, 1619, 1654
CspAI	ACCGGT	1 cut(s)	1745
CviAII	CATG	8 cut(s)	10, 256, 884, 1459, 1672, 1717, 1795, 2026
CviQI	GTAC	3 cut(s)	1148, 1619, 1654
DdeI	CTNAG	9 cut(s)	545, 569, 621, 783, 1200, 1209, 1299, 1709, 1737
DpnI	GATC	8 cut(s)	165, 276, 574, 791, 997, 1389, 1527, 1765
DpnII	GATC	8 cut(s)	163, 274, 572, 789, 995, 1387, 1525, 1763
DraI	TTTAAA	1 cut(s)	1218
DraIII	CACNNNGTG	1 cut(s)	1328
EaeI	YGGCCR	1 cut(s)	820
Eam1104I	CTCTTC	2 cut(s)	118, 475
EarI	CTCTTC	2 cut(s)	118, 475
EciI	GGCGGA	2 cut(s)	297, 329
Eco130I	CCWWGG	2 cut(s)	421, 1642
Eco24I	GRGCYC	2 cut(s)	668, 989
Eco32I	GATATC	1 cut(s)	1357
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	3 cut(s)	329, 1620, 2001
Eco81I	CCTNAGG	2 cut(s)	545, 783
Eco88I	CYCGRG	2 cut(s)	661, 1550
EcoO109I	RGGNCCY	2 cut(s)	355, 665
EcoRII	CCWGG	8 cut(s)	405, 607, 631, 679, 743, 1751, 1882, 2012
EcoRV	GATATC	1 cut(s)	1357
EcoT14I	CCWWGG	2 cut(s)	421, 1642
EcoT38I	GRGCYC	2 cut(s)	668, 989
ErhI	CCWWGG	2 cut(s)	421, 1642
Esp3I	CGTCTC	1 cut(s)	1405
FaeI	CATG	8 cut(s)	13, 259, 887, 1462, 1675, 1720, 1798, 2029
FalI	AAGNNNNNCTT	4 cut(s)	1344, 1376, 1593, 1625
FaqI	GGGAC	2 cut(s)	575, 1925
FatI	CATG	8 cut(s)	9, 255, 883, 1458, 1671, 1716, 1794, 2025
FauI	CCCGC	2 cut(s)	206, 243
FauNDI	CATATG	2 cut(s)	577, 1537
Fnu4HI	GCNGC	9 cut(s)	172, 241, 280, 751, 909, 1131, 1134, 1155, 1688
FokI	GGATG	4 cut(s)	538, 1305, 1823, 1899
FriOI	GRGCYC	2 cut(s)	668, 989
Fsp4HI	GCNGC	9 cut(s)	172, 241, 280, 751, 909, 1131, 1134, 1155, 1688
FspBI	CTAG	3 cut(s)	108, 959, 1025
GlaI	GCGC	4 cut(s)	150, 152, 239, 700
GluI	GCNGC	9 cut(s)	172, 241, 280, 751, 909, 1131, 1134, 1155, 1688
GsuI	CTGGAG	5 cut(s)	702, 726, 739, 747, 1260
HaeIII	GGCC	8 cut(s)	227, 323, 356, 543, 619, 666, 822, 987
HapII	CCGG	8 cut(s)	177, 183, 189, 311, 324, 662, 1746, 1808
HgaI	GACGC	3 cut(s)	203, 585, 1799
HhaI	GCGC	4 cut(s)	151, 153, 240, 701
Hin1I	GRCGYC	3 cut(s)	195, 596, 1791
Hin1II	CATG	8 cut(s)	13, 259, 887, 1462, 1675, 1720, 1798, 2029
Hin6I	GCGC	4 cut(s)	149, 151, 238, 699
HinP1I	GCGC	4 cut(s)	149, 151, 238, 699
HincII	GTYRAC	1 cut(s)	1189
HindII	GTYRAC	1 cut(s)	1189
HpaII	CCGG	8 cut(s)	177, 183, 189, 311, 324, 662, 1746, 1808
HphI	GGTGA	3 cut(s)	395, 442, 1340
Hpy166II	GTNNAC	4 cut(s)	60, 1174, 1189, 1291
Hpy188I	TCNGA	8 cut(s)	140, 274, 398, 570, 601, 1408, 1993, 2005
Hpy188III	TCNNGA	9 cut(s)	803, 918, 979, 1239, 1298, 1391, 1808, 1872, 1937
Hpy8I	GTNNAC	4 cut(s)	60, 1174, 1189, 1291
Hpy99I	CGWCG	4 cut(s)	197, 533, 601, 1793
HpyAV	CCTTC	7 cut(s)	256, 565, 1198, 1271, 1297, 1943, 1976
HpyCH4III	ACNGT	1 cut(s)	1916
HpyCH4IV	ACGT	3 cut(s)	1007, 1293, 1564
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 198, 240, 320, 375, 593, 1727
HpyF3I	CTNAG	9 cut(s)	545, 569, 621, 783, 1200, 1209, 1299, 1709, 1737
HpySE526I	ACGT	3 cut(s)	1007, 1293, 1564
Hsp92I	GRCGYC	3 cut(s)	195, 596, 1791
Hsp92II	CATG	8 cut(s)	13, 259, 887, 1462, 1675, 1720, 1798, 2029
HspAI	GCGC	4 cut(s)	149, 151, 238, 699
Kpn2I	TCCGGA	1 cut(s)	1807
KroI	GCCGGC	1 cut(s)	310
KroNI	GCCGGC	1 cut(s)	312
Kzo9I	GATC	8 cut(s)	163, 274, 572, 789, 995, 1387, 1525, 1763
Lsp1109I	GCAGC	5 cut(s)	227, 920, 1145, 1166, 1674
LweI	GCATC	7 cut(s)	560, 700, 706, 712, 1051, 1327, 1828
MabI	ACCWGGT	1 cut(s)	405
MaeI	CTAG	3 cut(s)	108, 959, 1025
MaeII	ACGT	3 cut(s)	1007, 1293, 1564
MaeIII	GTNAC	2 cut(s)	479, 1474
MalI	GATC	8 cut(s)	165, 276, 574, 791, 997, 1389, 1527, 1765
MboI	GATC	8 cut(s)	163, 274, 572, 789, 995, 1387, 1525, 1763
MfeI	CAATTG	2 cut(s)	373, 613
MflI	RGATCY	3 cut(s)	789, 995, 1387
MhlI	GDGCHC	4 cut(s)	668, 978, 989, 1444
MlsI	TGGCCA	1 cut(s)	822
MluCI	AATT	4 cut(s)	373, 613, 876, 1069
MluNI	TGGCCA	1 cut(s)	822
MlyI	GAGTC	5 cut(s)	137, 1536, 1707, 1868, 1997
MmeI	TCCRAC	3 cut(s)	421, 579, 1971
Mox20I	TGGCCA	1 cut(s)	822
MreI	CGCCGGCG	1 cut(s)	310
MroI	TCCGGA	1 cut(s)	1807
MroNI	GCCGGC	1 cut(s)	310
MroXI	GAANNNNTTC	1 cut(s)	1779
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	6 cut(s)	687, 1073, 1217, 1595, 1760, 1815
MslI	CAYNNNNRTG	2 cut(s)	140, 431
Msp20I	TGGCCA	1 cut(s)	822
MspA1I	CMGCKG	2 cut(s)	55, 1136
MspI	CCGG	8 cut(s)	177, 183, 189, 311, 324, 662, 1746, 1808
MssI	GTTTAAAC	1 cut(s)	1218
MunI	CAATTG	2 cut(s)	373, 613
MvaI	CCWGG	8 cut(s)	407, 609, 633, 681, 745, 1753, 1884, 2014
MvnI	CGCG	3 cut(s)	151, 238, 699
MwoI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 198, 240, 320, 375, 593, 1727
NaeI	GCCGGC	1 cut(s)	312
NciI	CCSGG	3 cut(s)	325, 662, 663
NdeI	CATATG	2 cut(s)	577, 1537
NdeII	GATC	8 cut(s)	163, 274, 572, 789, 995, 1387, 1525, 1763
NgoMIV	GCCGGC	1 cut(s)	310
NlaIII	CATG	8 cut(s)	13, 259, 887, 1462, 1675, 1720, 1798, 2029
NspI	RCATGY	2 cut(s)	13, 2029
OliI	CACNNNNGTG	1 cut(s)	431
PaqCI	CACCTGC	1 cut(s)	96
PauI	GCGCGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	312
PdmI	GAANNNNTTC	1 cut(s)	1779
PfeI	GAWTC	8 cut(s)	914, 1106, 1421, 1508, 1804, 1868, 1955, 2000
PinAI	ACCGGT	1 cut(s)	1745
PkrI	GCNGC	9 cut(s)	173, 242, 281, 752, 910, 1132, 1135, 1156, 1689
Ple19I	CGATCG	1 cut(s)	277
PleI	GAGTC	5 cut(s)	136, 1536, 1707, 1867, 1996
PmeI	GTTTAAAC	1 cut(s)	1218
PpsI	GAGTC	5 cut(s)	136, 1536, 1707, 1867, 1996
PsiI	TTATAA	1 cut(s)	861
Psp1406I	AACGTT	1 cut(s)	1293
Psp6I	CCWGG	8 cut(s)	405, 607, 631, 679, 743, 1751, 1882, 2012
PspGI	CCWGG	8 cut(s)	405, 607, 631, 679, 743, 1751, 1882, 2012
PspOMI	GGGCCC	2 cut(s)	664, 985
PspPI	GGNCC	6 cut(s)	259, 355, 664, 665, 985, 986
PstNI	CAGNNNCTG	2 cut(s)	725, 1621
PsuI	RGATCY	3 cut(s)	789, 995, 1387
PteI	GCGCGC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	277
PvuII	CAGCTG	1 cut(s)	1136
RsaI	GTAC	3 cut(s)	1149, 1620, 1655
RsaNI	GTAC	3 cut(s)	1148, 1619, 1654
RseI	CAYNNNNRTG	2 cut(s)	140, 431
SaqAI	TTAA	6 cut(s)	687, 1073, 1217, 1595, 1760, 1815
SatI	GCNGC	9 cut(s)	172, 241, 280, 751, 909, 1131, 1134, 1155, 1688
Sau3AI	GATC	8 cut(s)	163, 274, 572, 789, 995, 1387, 1525, 1763
Sau96I	GGNCC	6 cut(s)	259, 355, 664, 665, 985, 986
SchI	GAGTC	5 cut(s)	137, 1536, 1707, 1868, 1997
SduI	GDGCHC	4 cut(s)	668, 978, 989, 1444
SexAI	ACCWGGT	1 cut(s)	405
SfaNI	GCATC	7 cut(s)	560, 700, 706, 712, 1051, 1327, 1828
SfcI	CTRYAG	2 cut(s)	1284, 1842
SgrAI	CRCCGGYG	1 cut(s)	310
SinI	GGWCC	1 cut(s)	259
SmaI	CCCGGG	1 cut(s)	663
SmiMI	CAYNNNNRTG	2 cut(s)	140, 431
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	4 cut(s)	373, 613, 876, 1069
SspI	AATATT	2 cut(s)	1113, 1575
SspMI	CTAG	3 cut(s)	108, 959, 1025
StyI	CCWWGG	2 cut(s)	421, 1642
TaaI	ACNGT	1 cut(s)	1916
TaiI	ACGT	3 cut(s)	1010, 1296, 1567
TaqI	TCGA	6 cut(s)	1030, 1104, 1275, 1766, 1906, 1971
TasI	AATT	4 cut(s)	373, 613, 876, 1069
TatI	WGTACW	2 cut(s)	1147, 1653
TauI	GCSGC	4 cut(s)	174, 282, 753, 1133
TfiI	GAWTC	8 cut(s)	914, 1106, 1421, 1508, 1804, 1868, 1955, 2000
Tru1I	TTAA	6 cut(s)	687, 1073, 1217, 1595, 1760, 1815
Tru9I	TTAA	6 cut(s)	687, 1073, 1217, 1595, 1760, 1815
TscAI	CASTG	1 cut(s)	1965
TseI	GCWGC	5 cut(s)	240, 908, 1133, 1154, 1687
TspDTI	ATGAA	2 cut(s)	1197, 1688
TspGWI	ACGGA	3 cut(s)	654, 1439, 1640
TspMI	CCCGGG	1 cut(s)	661
TspRI	CASTG	1 cut(s)	1965
VpaK11BI	GGWCC	1 cut(s)	259
XapI	RAATTY	2 cut(s)	876, 1069
XceI	RCATGY	2 cut(s)	13, 2029
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XmaI	CCCGGG	1 cut(s)	661
XmnI	GAANNNNTTC	1 cut(s)	1779
XspI	CTAG	3 cut(s)	108, 959, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.