Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008310

Physical Location & Seq

Genomic Coordinates Reverse (-)

68290286 .. 68299644

Gene Structure 9359 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015591

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGTCTGGCATGTTGAGATGGCAGAAGCTAAAGCATATAGCACAGTTCCACCAGCGGTTCACTCAAGTATCCGCAATCTCCACGCACCCGCACCACTTCAATATCACTAGTCATCATCGCCGGAGAGAGTCTCTCATCGGAGTGCAGGCGCGCTACAAGTGGGATCACGGCGGCTCCGGCTCCGGCTCCGGCCCCGGCGATGCCCGCACCACCCGTAAAATCAGGGCAGAGGCCAACTGCCCGCGCTGCTCCTTCAACCGTATGGACCTCATCTTCTCCGATCGCCGCATACCTAACTTATCCCCTCCTCCTCCGCCGGCGGAGGAGGCCGGGAAGAATGGCTCTGAGCTTCAGTATCAGGCCCTCAATCTCTGCCCCAATTGCAAGACGGCCTACTACTTCCGACCTCACCAGGTTGCTCCCCTCCAAGGCACTTTCGTGGAGATTGGGAGGCTCACCAACACTAACACAACCTCTTCCAATCGTAACGCCACCAAAATCAAAACCAACGGTTCCAATCCCAATACCACAAACGACGATACTAATGGCCTGAGGGCATCCTTCTGGGACACTCTGAGATCATATGCTAATGCTAATGCTAATGGGGCGTCGGAGCCTCCTGGCAATTGGCCTCAGCCTCCCCCTGGCAATGGACTTGCTGTGCATACGCCCCCGGGCCCACCTTTTGCACCTGGTGTTAATGTCATTCGCGCTACTGGAGATGCAGATGCAGATGCTGGAGACAAGAAGACTGCCTGGGGCGGCTCCAATTTGGGAAAGGATTTGCCCACTCCTAAGGAGATCTGCAAGGGCCTTGATAAGTTCGTTATTGGCCAACAAAGAGCCAAAAAGGTGCTTTCTGTAGCTGTTTATAACCACTACAAACGAATTTATCATGCCTCTTTGCACAAAGGGTCAGCAGCAGAATCAGGAAAACCAAACACAATAGATAAAGAAGATAATGTAGAGCTAGAAAAGAGCAATGTGCTCTTGATGGGCCCAACTGGATCTGGGAAGACGTTGCTTGCAAAAACACTAGCTCGATTTGTGAATGTGCCATTTGTCATTACTGATGCAACGAATTTAACACAGGCTGGTTATGTTGGGGAAGATGTCGAATCAATATTGCAAAAACTATTGGCGGCAGCTGACTTCAATGTACAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGTTTAAACATTAGCAGAGATGTTTCTGGAGAGGGTGTTCAGCAGGCTTTACTGAAAATGCTCGAAGGAACTATAGTGAATGTTCCTGAGAAGGGTGCGAGGAAGCATCCACGGGGTGATAACATACAGATAGATACGAAAGATATCCTTTTTATTTGCGGTGGAGCATTTGTAGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGTTTTGGTGCTCCTGTCCGTGCCAACATGAGAGTTGGTGGTGTAACCAACGCAATACTGACATCATCTTTACTTGAATCGGTTGAAAGTGCTGATCTCATTGCATATGGACTCATACCAGAGTTTATTGGACGTTTTGCAATATTAGTTAGTTTATCTGCTTTAACTGAAGACCAACTTGTTCAGGTACTGACGGAACCAAAAAATGCCCTTGGTAAGCAGTACAAGAAACTATTCAGCATGAACAATGTGAAGCTGCATTTCACGGACAAAGCACTAAGACTCATGGCAAAGAAAGCGATGGCTAAGAATACCGGTGCCAGGGGATTAAGATCGATATTGGAAAGTATTTTAACCGAAGCCATGTATGAGATTCCGGATGTTAAAACAGGAGAAGATAGAGTAGATGCTGTAGTGGTTGATGAGGAGTCTGTGGATTCAGGAAATGCCCCTGGATGTGGAGGGAAGATTATTCGAGGGGATGGTGCGTTGGAAAGATACCTTCGTGAAATAAAGTTGAAAGAATCAGTGGAGTATGTTGAGGTAGCTGAAGGGGAGTCGGAGGGAGAATCAGAACATTCCAGGGCAATGAGCATGGTTGAAGCTCCCAACCAGACTCGATACAGGTCGAAGAACTTGCTGGTGCCGAAGATGATCAACGACCCGTCGTCAAAAATTGGGGCCGCCGAGTTGTTGAGTGAGATAAGGCTGTCGGTTGGAAGAGTGGTGATCGTGAGAGAGTGGCCGTCAAGCAAGATAGCGATCTTCGAGCAGAACGGGAGGGACTTCAGTGATCGAAGAGGGAAAGCGATGGGAGGAGGTGGTAGCAGATGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

761

Amino Acids

82.71

Weight (kDa)

9.08

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	325 - 529	3.5e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	329 - 435	1.6e-15	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	536 - 605	2.9e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33360
fragaria_vesca	FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040
malus_domestica	MD00G1089200.v1.1
prunus_persica	Prupe.8G000600_v2.0.a1
pyrus_communis	pycom215g00140
rosa_chinensis	RchiOBHm_Chr6g0249331
rosa_laevigata	RLG00000015591
rosa_roxburghii	Rroxscaffold_7G00217860
rosa_rugosa	Rorug05G0490400 Rorug05G0490500.1
rosa_samantha	Rh6AG001200 Rh6BG009100 Rh6CG000300 Rh6DG000200
rosa_wichuraiana	Rw6G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	873
AccB1I	GGYRCC	2 cut(s)	1760, 2086
AccII	CGCG	3 cut(s)	151, 244, 711
AccIII	TCCGGA	1 cut(s)	1819
AclWI	GGATC	2 cut(s)	171, 1015
AcoI	YGGCCR	2 cut(s)	832, 2186
AcsI	RAATTY	2 cut(s)	888, 1081
AcuI	CTGAAG	4 cut(s)	335, 1632, 2013, 2215
AcyI	GRCGYC	1 cut(s)	608
AdeI	CACNNNGTG	2 cut(s)	695, 1340
AfaI	GTAC	3 cut(s)	1161, 1632, 1667
AfiI	CCNNNNNNNGG	6 cut(s)	428, 644, 650, 1316, 1764, 1901
AgeI	ACCGGT	1 cut(s)	1757
AgsI	TTSAA	8 cut(s)	100, 256, 1156, 1406, 1520, 1529, 1963, 2045
AhdI	GACNNNNNGTC	1 cut(s)	2110
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	8 cut(s)	411, 619, 643, 691, 755, 1763, 1894, 2024
AleI	CACNNNNGTG	1 cut(s)	437
AloI	GAACNNNNNNTCC	2 cut(s)	1245, 1277
Alw21I	GWGCWC	2 cut(s)	990, 1456
Alw26I	GTCTC	3 cut(s)	135, 735, 1417
AlwI	GGATC	2 cut(s)	171, 1015
AlwNI	CAGNNNCTG	2 cut(s)	737, 1633
Ama87I	CYCGRG	1 cut(s)	673
Aor13HI	TCCGGA	1 cut(s)	1819
ApaI	GGGCCC	2 cut(s)	680, 1001
ApeKI	GCWGC	5 cut(s)	246, 920, 1145, 1166, 1699
ApoI	RAATTY	2 cut(s)	888, 1081
AsiGI	ACCGGT	1 cut(s)	1757
Asp700I	GAANNNNTTC	1 cut(s)	1676
AspLEI	GCGC	4 cut(s)	151, 153, 246, 713
AspS9I	GGNCC	9 cut(s)	191, 265, 361, 676, 677, 811, 997, 998, 2124
AsuC2I	CCSGG	4 cut(s)	195, 331, 674, 675
AsuHPI	GGTGA	4 cut(s)	401, 448, 1352, 2182
AvaI	CYCGRG	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	265
AxyI	CCTNAGG	2 cut(s)	551, 795
BaeGI	GKGCMC	2 cut(s)	680, 1001
BaeI	ACNNNNGTAYC	4 cut(s)	51, 84, 1933, 1966
BalI	TGGCCA	1 cut(s)	834
BanI	GGYRCC	2 cut(s)	1760, 2086
BanII	GRGCYC	2 cut(s)	680, 1001
BbsI	GAAGAC	3 cut(s)	755, 1022, 1620
Bbv12I	GWGCWC	2 cut(s)	990, 1456
BbvCI	CCTCAGC	1 cut(s)	633
BbvI	GCAGC	5 cut(s)	233, 932, 1157, 1178, 1686
BccI	CCATC	6 cut(s)	12, 988, 1738, 1919, 2248, 2268
BceAI	ACGGC	3 cut(s)	184, 405, 2173
BcgI	CGANNNNNNTGC	2 cut(s)	2062, 2096
BciT130I	CCWGG	8 cut(s)	413, 621, 645, 693, 757, 1765, 1896, 2026
BciVI	GTATCC	1 cut(s)	79
BclI	TGATCA	1 cut(s)	2097
BcnI	CCSGG	4 cut(s)	195, 331, 674, 675
BcoDI	GTCTC	3 cut(s)	135, 735, 1417
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	3 cut(s)	108, 971, 1037
BfmI	CTRYAG	3 cut(s)	861, 1296, 1854
BfuI	GTATCC	1 cut(s)	79
BglII	AGATCT	2 cut(s)	801, 1399
Bme18I	GGWCC	1 cut(s)	265
BmeRI	GACNNNNNGTC	1 cut(s)	2110
BmeT110I	CYCGRG	1 cut(s)	673
BmgT120I	GGNCC	9 cut(s)	191, 265, 361, 676, 677, 811, 997, 998, 2124
BmsI	GCATC	8 cut(s)	190, 566, 712, 718, 724, 1063, 1339, 1840
BpiI	GAAGAC	3 cut(s)	755, 1022, 1620
BplI	GAGNNNNNCTC	4 cut(s)	115, 147, 117, 149
BpmI	CTGGAG	3 cut(s)	738, 759, 1272
Bpu10I	CCTNAGC	1 cut(s)	633
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	4 cut(s)	195, 331, 674, 675
Bsa29I	ATCGAT	1 cut(s)	1778
BsaBI	GATNNNNATC	2 cut(s)	1774, 2204
BsaHI	GRCGYC	1 cut(s)	608
BsaWI	WCCGGW	2 cut(s)	1757, 1819
BsaXI	ACNNNNNCTCC	6 cut(s)	158, 188, 1245, 1275, 1380, 1410
Bsc4I	CCNNNNNNNGG	6 cut(s)	428, 644, 650, 1316, 1764, 1901
Bse118I	RCCGGY	2 cut(s)	316, 1757
Bse1I	ACTGG	2 cut(s)	721, 1009
Bse21I	CCTNAGG	2 cut(s)	551, 795
Bse3DI	GCAATG	4 cut(s)	655, 988, 1542, 2037
Bse8I	GATNNNNATC	2 cut(s)	1774, 2204
BseAI	TCCGGA	1 cut(s)	1819
BseBI	CCWGG	8 cut(s)	413, 621, 645, 693, 757, 1765, 1896, 2026
BseCI	ATCGAT	1 cut(s)	1778
BseGI	GGATG	5 cut(s)	557, 1330, 1828, 1904, 1930
BseJI	GATNNNNATC	2 cut(s)	1774, 2204
BseLI	CCNNNNNNNGG	6 cut(s)	428, 644, 650, 1316, 1764, 1901
BseMI	GCAATG	4 cut(s)	655, 988, 1542, 2037
BseMII	CTCAG	6 cut(s)	336, 542, 566, 647, 1212, 1302
BseNI	ACTGG	2 cut(s)	721, 1009
BsePI	GCGCGC	1 cut(s)	149
BseRI	GAGGAG	5 cut(s)	297, 300, 338, 1883, 2274
BseSI	GKGCMC	2 cut(s)	680, 1001
BseXI	GCAGC	5 cut(s)	233, 932, 1157, 1178, 1686
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	3 cut(s)	151, 244, 711
Bsh1285I	CGRYCG	1 cut(s)	283
BshNI	GGYRCC	2 cut(s)	1760, 2086
BshTI	ACCGGT	1 cut(s)	1757
BshVI	ATCGAT	1 cut(s)	1778
BsiEI	CGRYCG	1 cut(s)	283
BsiHKAI	GWGCWC	2 cut(s)	990, 1456
BsiHKCI	CYCGRG	1 cut(s)	673
BslFI	GGGAC	2 cut(s)	581, 2240
BslI	CCNNNNNNNGG	6 cut(s)	428, 644, 650, 1316, 1764, 1901
BsmAI	GTCTC	3 cut(s)	135, 735, 1417
BsmBI	CGTCTC	1 cut(s)	1417
BsmFI	GGGAC	2 cut(s)	581, 2240
BsoBI	CYCGRG	1 cut(s)	673
Bsp120I	GGGCCC	2 cut(s)	676, 997
Bsp1286I	GDGCHC	4 cut(s)	680, 990, 1001, 1456
Bsp13I	TCCGGA	1 cut(s)	1819
Bsp1407I	TGTACA	1 cut(s)	1159
BspCNI	CTCAG	6 cut(s)	337, 543, 567, 646, 1213, 1303
BspDI	ATCGAT	1 cut(s)	1778
BspEI	TCCGGA	1 cut(s)	1819
BspFNI	CGCG	3 cut(s)	151, 244, 711
BspPI	GGATC	2 cut(s)	171, 1015
BspT107I	GGYRCC	2 cut(s)	1760, 2086
BsrDI	GCAATG	4 cut(s)	655, 988, 1542, 2037
BsrFI	RCCGGY	2 cut(s)	316, 1757
BsrGI	TGTACA	1 cut(s)	1159
BsrI	ACTGG	2 cut(s)	721, 1009
BssAI	RCCGGY	2 cut(s)	316, 1757
BssHII	GCGCGC	1 cut(s)	149
BssNI	GRCGYC	1 cut(s)	608
BssT1I	CCWWGG	2 cut(s)	427, 1654
Bst2UI	CCWGG	8 cut(s)	413, 621, 645, 693, 757, 1765, 1896, 2026
Bst4CI	ACNGT	3 cut(s)	45, 260, 512
Bst6I	CTCTTC	3 cut(s)	481, 2158, 2236
BstACI	GRCGYC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	1159
BstC8I	GCNNGC	7 cut(s)	147, 151, 205, 242, 318, 1026, 1269
BstDSI	CCRYGG	1 cut(s)	1334
BstF5I	GGATG	5 cut(s)	557, 1330, 1828, 1904, 1930
BstFNI	CGCG	3 cut(s)	151, 244, 711
BstHHI	GCGC	4 cut(s)	151, 153, 246, 713
BstMAI	GTCTC	3 cut(s)	135, 735, 1417
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	7 cut(s)	177, 204, 246, 326, 381, 605, 1739
BstNI	CCWGG	8 cut(s)	413, 621, 645, 693, 757, 1765, 1896, 2026
BstNSI	RCATGY	1 cut(s)	13
BstSFI	CTRYAG	3 cut(s)	861, 1296, 1854
BstSLI	GKGCMC	2 cut(s)	680, 1001
BstUI	CGCG	3 cut(s)	151, 244, 711
BstV1I	GCAGC	5 cut(s)	233, 932, 1157, 1178, 1686
BstV2I	GAAGAC	3 cut(s)	755, 1022, 1620
BstX2I	RGATCY	3 cut(s)	801, 1007, 1399
BstYI	RGATCY	3 cut(s)	801, 1007, 1399
Bsu15I	ATCGAT	1 cut(s)	1778
Bsu36I	CCTNAGG	2 cut(s)	551, 795
BsuI	GTATCC	1 cut(s)	79
BsuTUI	ATCGAT	1 cut(s)	1778
BtgI	CCRYGG	1 cut(s)	1334
BtgZI	GCGATG	4 cut(s)	101, 213, 1757, 2267
BtsCI	GGATG	5 cut(s)	557, 1330, 1828, 1904, 1930
BtsIMutI	CAGTG	2 cut(s)	1977, 2239
Cac8I	GCNNGC	7 cut(s)	147, 151, 205, 242, 318, 1026, 1269
CaiI	CAGNNNCTG	2 cut(s)	737, 1633
CfoI	GCGC	4 cut(s)	151, 153, 246, 713
Cfr10I	RCCGGY	2 cut(s)	316, 1757
Cfr13I	GGNCC	9 cut(s)	191, 265, 361, 676, 677, 811, 997, 998, 2124
Cfr9I	CCCGGG	1 cut(s)	673
ClaI	ATCGAT	1 cut(s)	1778
CseI	GACGC	1 cut(s)	597
CsiI	ACCWGGT	2 cut(s)	411, 691
Csp6I	GTAC	3 cut(s)	1160, 1631, 1666
CspAI	ACCGGT	1 cut(s)	1757
CviAII	CATG	7 cut(s)	10, 896, 1471, 1684, 1729, 1807, 2038
CviQI	GTAC	3 cut(s)	1160, 1631, 1666
DraI	TTTAAA	1 cut(s)	1230
DraIII	CACNNNGTG	2 cut(s)	695, 1340
DriI	GACNNNNNGTC	1 cut(s)	2110
EaeI	YGGCCR	2 cut(s)	832, 2186
Eam1104I	CTCTTC	3 cut(s)	481, 2158, 2236
Eam1105I	GACNNNNNGTC	1 cut(s)	2110
EarI	CTCTTC	3 cut(s)	481, 2158, 2236
EciI	GGCGGA	2 cut(s)	303, 335
Eco130I	CCWWGG	2 cut(s)	427, 1654
Eco24I	GRGCYC	2 cut(s)	680, 1001
Eco32I	GATATC	1 cut(s)	1369
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	4 cut(s)	335, 1632, 2013, 2215
Eco81I	CCTNAGG	2 cut(s)	551, 795
Eco88I	CYCGRG	1 cut(s)	673
EcoO109I	RGGNCCY	2 cut(s)	361, 811
EcoRII	CCWGG	8 cut(s)	411, 619, 643, 691, 755, 1763, 1894, 2024
EcoRV	GATATC	1 cut(s)	1369
EcoT14I	CCWWGG	2 cut(s)	427, 1654
EcoT38I	GRGCYC	2 cut(s)	680, 1001
ErhI	CCWWGG	2 cut(s)	427, 1654
Esp3I	CGTCTC	1 cut(s)	1417
FaeI	CATG	7 cut(s)	13, 899, 1474, 1687, 1732, 1810, 2041
FalI	AAGNNNNNCTT	4 cut(s)	1356, 1388, 1605, 1637
FaqI	GGGAC	2 cut(s)	581, 2240
FatI	CATG	7 cut(s)	9, 895, 1470, 1683, 1728, 1806, 2037
FauI	CCCGC	3 cut(s)	96, 212, 249
FauNDI	CATATG	2 cut(s)	583, 1549
FbaI	TGATCA	1 cut(s)	2097
FokI	GGATG	5 cut(s)	544, 1317, 1835, 1911, 1937
FriOI	GRGCYC	2 cut(s)	680, 1001
FspBI	CTAG	3 cut(s)	108, 971, 1037
GlaI	GCGC	4 cut(s)	150, 152, 245, 712
GsuI	CTGGAG	3 cut(s)	738, 759, 1272
HgaI	GACGC	1 cut(s)	597
HhaI	GCGC	4 cut(s)	151, 153, 246, 713
Hin1I	GRCGYC	1 cut(s)	608
Hin1II	CATG	7 cut(s)	13, 899, 1474, 1687, 1732, 1810, 2041
Hin6I	GCGC	4 cut(s)	149, 151, 244, 711
HinP1I	GCGC	4 cut(s)	149, 151, 244, 711
HincII	GTYRAC	1 cut(s)	1201
HindII	GTYRAC	1 cut(s)	1201
HphI	GGTGA	4 cut(s)	401, 448, 1352, 2182
Hpy166II	GTNNAC	3 cut(s)	60, 1186, 1201
Hpy188I	TCNGA	9 cut(s)	140, 280, 346, 404, 576, 613, 1420, 2005, 2017
Hpy188III	TCNNGA	9 cut(s)	930, 991, 1251, 1310, 1403, 1820, 1884, 1949, 2176
Hpy8I	GTNNAC	3 cut(s)	60, 1186, 1201
Hpy99I	CGWCG	3 cut(s)	539, 613, 2113
HpyAV	CCTTC	7 cut(s)	262, 571, 1210, 1283, 1309, 1955, 1988
HpyCH4III	ACNGT	3 cut(s)	45, 260, 512
HpyCH4IV	ACGT	2 cut(s)	1019, 1576
HpyF10VI	GCNNNNNNNGC	7 cut(s)	177, 204, 246, 326, 381, 605, 1739
HpySE526I	ACGT	2 cut(s)	1019, 1576
Hsp92I	GRCGYC	1 cut(s)	608
Hsp92II	CATG	7 cut(s)	13, 899, 1474, 1687, 1732, 1810, 2041
HspAI	GCGC	4 cut(s)	149, 151, 244, 711
Kpn2I	TCCGGA	1 cut(s)	1819
KroI	GCCGGC	1 cut(s)	316
KroNI	GCCGGC	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	2097
Lsp1109I	GCAGC	5 cut(s)	233, 932, 1157, 1178, 1686
LweI	GCATC	8 cut(s)	190, 566, 712, 718, 724, 1063, 1339, 1840
MabI	ACCWGGT	2 cut(s)	411, 691
MaeI	CTAG	3 cut(s)	108, 971, 1037
MaeII	ACGT	2 cut(s)	1019, 1576
MaeIII	GTNAC	2 cut(s)	485, 1486
MfeI	CAATTG	2 cut(s)	379, 625
MflI	RGATCY	3 cut(s)	801, 1007, 1399
MhlI	GDGCHC	4 cut(s)	680, 990, 1001, 1456
MlsI	TGGCCA	1 cut(s)	834
MluCI	AATT	6 cut(s)	379, 625, 769, 888, 1081, 2118
MluNI	TGGCCA	1 cut(s)	834
MlyI	GAGTC	6 cut(s)	137, 1548, 1719, 1880, 2009, 2053
MmeI	TCCRAC	5 cut(s)	427, 591, 1914, 1983, 2140
Mox20I	TGGCCA	1 cut(s)	834
MreI	CGCCGGCG	1 cut(s)	316
MroI	TCCGGA	1 cut(s)	1819
MroNI	GCCGGC	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	1676
MscI	TGGCCA	1 cut(s)	834
MseI	TTAA	7 cut(s)	699, 1085, 1229, 1607, 1772, 1796, 1827
MslI	CAYNNNNRTG	2 cut(s)	140, 437
Msp20I	TGGCCA	1 cut(s)	834
MspA1I	CMGCKG	2 cut(s)	55, 1148
MssI	GTTTAAAC	1 cut(s)	1230
MunI	CAATTG	2 cut(s)	379, 625
MvaI	CCWGG	8 cut(s)	413, 621, 645, 693, 757, 1765, 1896, 2026
MvnI	CGCG	3 cut(s)	151, 244, 711
MwoI	GCNNNNNNNGC	7 cut(s)	177, 204, 246, 326, 381, 605, 1739
NaeI	GCCGGC	1 cut(s)	318
NciI	CCSGG	4 cut(s)	195, 331, 674, 675
NdeI	CATATG	2 cut(s)	583, 1549
NgoMIV	GCCGGC	1 cut(s)	316
NlaIII	CATG	7 cut(s)	13, 899, 1474, 1687, 1732, 1810, 2041
NmeAIII	GCCGAG	1 cut(s)	2155
NspI	RCATGY	1 cut(s)	13
OliI	CACNNNNGTG	1 cut(s)	437
PauI	GCGCGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	1676
PfeI	GAWTC	8 cut(s)	926, 1118, 1433, 1520, 1816, 1880, 1967, 2012
PinAI	ACCGGT	1 cut(s)	1757
Ple19I	CGATCG	1 cut(s)	283
PleI	GAGTC	6 cut(s)	136, 1548, 1719, 1879, 2008, 2053
PmeI	GTTTAAAC	1 cut(s)	1230
PpsI	GAGTC	6 cut(s)	136, 1548, 1719, 1879, 2008, 2053
PsiI	TTATAA	1 cut(s)	873
Psp6I	CCWGG	8 cut(s)	411, 619, 643, 691, 755, 1763, 1894, 2024
PspGI	CCWGG	8 cut(s)	411, 619, 643, 691, 755, 1763, 1894, 2024
PspOMI	GGGCCC	2 cut(s)	676, 997
PspPI	GGNCC	9 cut(s)	191, 265, 361, 676, 677, 811, 997, 998, 2124
PstNI	CAGNNNCTG	2 cut(s)	737, 1633
PsuI	RGATCY	3 cut(s)	801, 1007, 1399
PteI	GCGCGC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	283
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	3 cut(s)	1161, 1632, 1667
RsaNI	GTAC	3 cut(s)	1160, 1631, 1666
RseI	CAYNNNNRTG	2 cut(s)	140, 437
SaqAI	TTAA	7 cut(s)	699, 1085, 1229, 1607, 1772, 1796, 1827
Sau96I	GGNCC	9 cut(s)	191, 265, 361, 676, 677, 811, 997, 998, 2124
SchI	GAGTC	6 cut(s)	137, 1548, 1719, 1880, 2009, 2053
SduI	GDGCHC	4 cut(s)	680, 990, 1001, 1456
SexAI	ACCWGGT	2 cut(s)	411, 691
SfaNI	GCATC	8 cut(s)	190, 566, 712, 718, 724, 1063, 1339, 1840
SfcI	CTRYAG	3 cut(s)	861, 1296, 1854
SgrAI	CRCCGGYG	1 cut(s)	316
SinI	GGWCC	1 cut(s)	265
SmaI	CCCGGG	1 cut(s)	675
SmiMI	CAYNNNNRTG	2 cut(s)	140, 437
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	6 cut(s)	379, 625, 769, 888, 1081, 2118
SspI	AATATT	2 cut(s)	1125, 1587
SspMI	CTAG	3 cut(s)	108, 971, 1037
StyI	CCWWGG	2 cut(s)	427, 1654
TaaI	ACNGT	3 cut(s)	45, 260, 512
TaiI	ACGT	2 cut(s)	1022, 1579
TaqI	TCGA	9 cut(s)	1042, 1116, 1287, 1778, 1918, 2062, 2072, 2211, 2239
TasI	AATT	6 cut(s)	379, 625, 769, 888, 1081, 2118
TatI	WGTACW	2 cut(s)	1159, 1665
TauI	GCSGC	5 cut(s)	174, 288, 765, 1145, 2129
TfiI	GAWTC	8 cut(s)	926, 1118, 1433, 1520, 1816, 1880, 1967, 2012
Tru1I	TTAA	7 cut(s)	699, 1085, 1229, 1607, 1772, 1796, 1827
Tru9I	TTAA	7 cut(s)	699, 1085, 1229, 1607, 1772, 1796, 1827
TscAI	CASTG	2 cut(s)	1977, 2239
TseI	GCWGC	5 cut(s)	246, 920, 1145, 1166, 1699
TspDTI	ATGAA	2 cut(s)	1209, 1700
TspGWI	ACGGA	3 cut(s)	1451, 1652, 1724
TspMI	CCCGGG	1 cut(s)	673
TspRI	CASTG	2 cut(s)	1977, 2239
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	2 cut(s)	888, 1081
XceI	RCATGY	1 cut(s)	13
XmaI	CCCGGG	1 cut(s)	673
XmnI	GAANNNNTTC	1 cut(s)	1676
XspI	CTAG	3 cut(s)	108, 971, 1037

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.