Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008310

Physical Location & Seq

Genomic Coordinates Forward (+)

67379487 .. 67379774

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0490400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGGTTTTCCATTCCACGCTCCCCGTCTCCGCCATCATGGACGGGCTCGAGAAGATACGCCGTAAGGAAAACGGTATTCCGCTTGGCCAAATGCAGAGTGACAAGACCGTCGGCGGTGGAGACGACGCCTTCAACACTTTCTTCAATGAAATCGGAGCCGGATTGCACGTCCCCCGCGCCGTGTTCCTGGATCTGGAGCCCACCGTCATCAACGAGGAGGACCGGAACTTACCGGCTGTTCCACCCCGAGCAGCTCATCAGCGGCAAAGAGGACGCCGCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

95

Amino Acids

10.56

Weight (kDa)

6.27

Isoelectric Point (pI)

47.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33360
fragaria_vesca	FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040
malus_domestica	MD00G1089200.v1.1
prunus_persica	Prupe.8G000600_v2.0.a1
pyrus_communis	pycom215g00140
rosa_chinensis	RchiOBHm_Chr6g0249331
rosa_laevigata	RLG00000015591
rosa_roxburghii	Rroxscaffold_7G00217860
rosa_rugosa	Rorug05G0490400 Rorug05G0490500.1
rosa_samantha	Rh6AG001200 Rh6BG009100 Rh6CG000300 Rh6DG000200
rosa_wichuraiana	Rw6G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	110
AccII	CGCG	1 cut(s)	180
AciI	CCGC	6 cut(s)	33, 83, 117, 178, 265, 280
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	88
AcyI	GRCGYC	2 cut(s)	129, 277
AfiI	CCNNNNNNNGG	1 cut(s)	196
AgsI	TTSAA	2 cut(s)	136, 148
AjiI	CACGTC	1 cut(s)	172
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	1 cut(s)	257
AluI	AGCT	1 cut(s)	257
Alw26I	GTCTC	2 cut(s)	34, 117
AlwI	GGATC	1 cut(s)	201
Ama87I	CYCGRG	2 cut(s)	50, 249
AoxI	GGCC	1 cut(s)	88
ApeKI	GCWGC	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	182
AspS9I	GGNCC	1 cut(s)	223
AvaI	CYCGRG	2 cut(s)	50, 249
AvaII	GGWCC	1 cut(s)	223
BalI	TGGCCA	1 cut(s)	90
BanII	GRGCYC	2 cut(s)	51, 204
BbvI	GCAGC	1 cut(s)	266
BccI	CCATC	1 cut(s)	44
BceAI	ACGGC	2 cut(s)	48, 167
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	34, 117
BisI	GCNGC	3 cut(s)	255, 266, 280
BlsI	GCNGC	3 cut(s)	256, 267, 281
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	2 cut(s)	50, 249
BmgBI	CACGTC	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	160, 201
BmrFI	CCNGG	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	218
BsaHI	GRCGYC	2 cut(s)	129, 277
BsaWI	WCCGGW	1 cut(s)	225
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
Bse118I	RCCGGY	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	266
Bsh1236I	CGCG	1 cut(s)	180
BshFI	GGCC	1 cut(s)	90
BsiHKCI	CYCGRG	2 cut(s)	50, 249
BsiSI	CCGG	3 cut(s)	162, 226, 236
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmAI	GTCTC	2 cut(s)	34, 117
BsmBI	CGTCTC	2 cut(s)	34, 117
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	90
BsoBI	CYCGRG	2 cut(s)	50, 249
Bsp1286I	GDGCHC	2 cut(s)	51, 204
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	6 cut(s)	33, 83, 117, 178, 265, 280
BspANI	GGCC	1 cut(s)	90
BspFNI	CGCG	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	160, 201
BspPI	GGATC	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssMI	GATC	1 cut(s)	193
BssNI	GRCGYC	2 cut(s)	129, 277
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	3 cut(s)	77, 112, 208
BstACI	GRCGYC	2 cut(s)	129, 277
BstFNI	CGCG	1 cut(s)	180
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	34, 117
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	1 cut(s)	90
BtrI	CACGTC	1 cut(s)	172
CfoI	GCGC	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	223
CseI	GACGC	1 cut(s)	137
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	6 cut(s)	49, 90, 161, 202, 239, 257
CviKI_1	RGCY	6 cut(s)	49, 90, 161, 202, 239, 257
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	110
DseDI	GACNNNNNNGTC	1 cut(s)	110
EaeI	YGGCCR	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	22
Eco24I	GRGCYC	2 cut(s)	51, 204
Eco47I	GGWCC	1 cut(s)	223
Eco88I	CYCGRG	2 cut(s)	50, 249
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	2 cut(s)	51, 204
Esp3I	CGTCTC	2 cut(s)	34, 117
FaeI	CATG	1 cut(s)	43
FaiI	YATR	1 cut(s)	41
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	39
FauI	CCCGC	1 cut(s)	185
Fnu4HI	GCNGC	3 cut(s)	255, 266, 280
FriOI	GRGCYC	2 cut(s)	51, 204
Fsp4HI	GCNGC	3 cut(s)	255, 266, 280
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	3 cut(s)	255, 266, 280
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	90
HapII	CCGG	3 cut(s)	162, 226, 236
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	2 cut(s)	129, 277
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HpaII	CCGG	3 cut(s)	162, 226, 236
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	2 cut(s)	52, 197
Hpy99I	CGWCG	2 cut(s)	116, 131
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	3 cut(s)	77, 112, 208
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	97, 169
HpySE526I	ACGT	1 cut(s)	171
Hsp92I	GRCGYC	2 cut(s)	129, 277
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	3 cut(s)	27, 158, 199
LpnPI	CCDG	6 cut(s)	175, 176, 182, 203, 239, 249
Lsp1109I	GCAGC	1 cut(s)	266
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	67, 136
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	51, 204
MlsI	TGGCCA	1 cut(s)	90
MluNI	TGGCCA	1 cut(s)	90
MnlI	CCTC	3 cut(s)	211, 214, 266
Mox20I	TGGCCA	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	90
MspA1I	CMGCKG	1 cut(s)	265
MspI	CCGG	3 cut(s)	162, 226, 236
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	180
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	2 cut(s)	160, 201
NmuCI	GTSAC	1 cut(s)	101
PaeR7I	CTCGAG	1 cut(s)	50
PfoI	TCCNGGA	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	256, 267, 281
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	160, 201
PspPI	GGNCC	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	193
SatI	GCNGC	3 cut(s)	255, 266, 280
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	51, 204
SetI	ASST	3 cut(s)	9, 174, 259
Sfr274I	CTCGAG	1 cut(s)	50
SinI	GGWCC	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	50
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SsiI	CCGC	6 cut(s)	33, 83, 117, 178, 265, 280
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	3 cut(s)	77, 112, 208
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	1 cut(s)	51
TauI	GCSGC	2 cut(s)	268, 282
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	223
XhoI	CTCGAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.