Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008310

Physical Location & Seq

Genomic Coordinates Forward (+)

5245600 .. 5254500

Gene Structure 8901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2025 bp

ATGTCTGGCATGTTGAGATGGCAGAAACTAAAGCATATAGCACAGCTCCACCAGCGGTTCACTCAAGTATCCGCAATCTCCACGCACCTGCACCACTTCAATATCACTAGCCATCATCGCCGAAGAGAGTCTCTCATCGGAGTGCAGGCGCGCTACAAGTGGGATCACGGCGGCTCGGGCTCCGGCGATGCCCGCACCACCCGTAAAATCAGGGCAGAGGCCAACTGCCCGCGCTGCTCCTTCAACCGTATGGACCTCATCTTCTCCGATCGCCGCTTACCTAACTTATCCCCTCCTCCTCCGCCGGCGGAGGAGGCCGGGAGGAATGGCTCTGGGCTTCAGTATCAGGCCCTCAATCTCTGCCCCAATTGCAAGACCGCCTACTACTTCCGACCTCACCAGGTTGCTCCCCTCCAAGGCACTTTCGTGGAGATTGGGAGGCTCACCAACACTAACACAACCTCTTCCAATCGCAACGCCACCAAAATCAAAACCAATGGTTCCAATCCCAATACCACAAACGACGATACTAATGGCCTGAGGGCATCCTTCTGGGACACTCTGAGATCATATGCCAATGCTAATGGGGCGTCGGAGCCACCTGGCAATTGGCCTCAGCCTCCCCCTGGCAACGGACTTGCTGTGCATACGCCCCCGGGCCCCCCTTTTGCACCTGGAGTTAATGTCATTCGCGCTACTGGAGATGCAGATGCAGATGCTGGAGACAAGAAGACTGCCTGGGGCGGCTCCAATTTGGGGAAGGATTTGCCCACTCCTAAGGAGATCTGCCAGGGTCTTGATAAGTTCGTTATTGGGCAACAAAGAGCCAAAAAGGTGCTTTCTGTTGCTGTTTATAACCACTACAAACGAATTTATCATGCCTCCTTGCACAAAGGGTCAGCAGCAGAATCAGGAAAACCAAACACAATAGATAAAGAAGATAGTGTAGAGCTAGAAAAGAGCAATGTGCTCTTGATGGGCCCAACTGGATCTGGGAAGACGTTGCTTGCAAAAACACTAGCTCGATTTGTGAATGTGCCATTTGTCATTACTGATGCAACGAATTTAACACAGGCTGGTTATGTTGGGGAAGATGTCGAATCAATATTGCAAAAACTATTGGCGGCAGCTGACTTCAATGTACAAGCAGCTCAACAAGGGATTGTTTACATTGATGAAGTTGACAAGATAACTAAGAAGGCTGAGAGTTTAAACATTAGCAGAGATGTTTCTGGAGAGGGTGTTCAGCAGGCTTTACTGAAAATGCTCGAAGGAACTATAGTGAACGTTCCTGAGAAGGGTGCGAGGAAGCATCCACGGGGTGATAACATACAGATAGATACGAAAGATATCCTTTTTATTTGTGGTGGAGCATTTGTAGATCTTGAAAAAACCATTTCAGAGAGACGACAAGATTCTTCTATTGGCTTTGGTGCTCCTGTCCGTGCCAACATGAGAGCTGGTGGTGTAACCAACGCAATACTGACATCATCTTTACTTGAATTGGTTGAAAGTGCTGATCTCATTGCATATGGACTCATACCCGAGTTTATTGGACGTTTTGCAATATTAGTTAGTTTATCTGCTTTAACTGAAGACCAACTTGTTCAGGTACTGACGGAACCAAAAAATGCCCTTGGTAAGCAGTACAAGAAACTATTTAGCATGAACAATGTGAAGCTGCATTTCACGGACAAAGCACTAAGACTCATGGCAAAGAAAGCGATGGCTAAGAATACCGGTGCCAGGGGATTAAGATCGATATTGGAAAGTATTCTAACCGAAGCCATGTATGAGATTCCGGATGTTAAAACAGGAGAAGATAGAGTAGATGCTGTAGTGGTTGATGAGGAGTCTGTGGATTCAGGAAATGCCCCTGGATGTGGAGGGAAGATTATTCGAGGGGACGGTGCATTGGAAAGATACCTTCGTGAAATAAAGTTGAAAGAATCAGTGGAGTATGTCGAGGTAGCTGAACGGGAGTCGGAGGGAGAATCAGAACATTCCAGGGCTATGAGCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0070011 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

674

Amino Acids

73.41

Weight (kDa)

8.79

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_2	PF07724	319 - 523	7.7e-30	AAA domain (Cdc48 subfamily)
AAA	PF00004	323 - 429	1.3e-15	ATPase family associated with various cellular activities (AAA)
ClpB_D2-small	PF10431	530 - 599	2.5e-10	C-terminal, D2-small domain, of ClpB protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33360
fragaria_vesca	FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040 FvH4_2g00040
malus_domestica	MD00G1089200.v1.1
prunus_persica	Prupe.8G000600_v2.0.a1
pyrus_communis	pycom215g00140
rosa_chinensis	RchiOBHm_Chr6g0249331
rosa_laevigata	RLG00000015591
rosa_roxburghii	Rroxscaffold_7G00217860
rosa_rugosa	Rorug05G0490400 Rorug05G0490500.1
rosa_samantha	Rh6AG001200 Rh6BG009100 Rh6CG000300 Rh6DG000200
rosa_wichuraiana	Rw6G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AarI	CACCTGC	1 cut(s)	96
Acc36I	ACCTGC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	1742
AccII	CGCG	3 cut(s)	151, 232, 693
AccIII	TCCGGA	1 cut(s)	1801
AclI	AACGTT	1 cut(s)	1287
AclWI	GGATC	2 cut(s)	171, 997
AcsI	RAATTY	2 cut(s)	870, 1063
AcuI	CTGAAG	2 cut(s)	323, 1614
AcyI	GRCGYC	1 cut(s)	590
AdeI	CACNNNGTG	1 cut(s)	1322
AfaI	GTAC	3 cut(s)	1143, 1614, 1649
AfiI	CCNNNNNNNGG	7 cut(s)	416, 626, 632, 756, 1298, 1746, 1883
AgeI	ACCGGT	1 cut(s)	1739
AgsI	TTSAA	7 cut(s)	100, 244, 1138, 1388, 1502, 1511, 1945
AjnI	CCWGG	9 cut(s)	399, 601, 625, 673, 737, 789, 1745, 1876, 2006
AleI	CACNNNNGTG	1 cut(s)	425
AloI	GAACNNNNNNTCC	2 cut(s)	1227, 1259
AluBI	AGCT	8 cut(s)	46, 952, 1022, 1130, 1151, 1460, 1681, 1973
AluI	AGCT	8 cut(s)	46, 952, 1022, 1130, 1151, 1460, 1681, 1973
Alw21I	GWGCWC	2 cut(s)	972, 1438
Alw26I	GTCTC	3 cut(s)	135, 717, 1399
AlwI	GGATC	2 cut(s)	171, 997
AlwNI	CAGNNNCTG	2 cut(s)	719, 1615
Ama87I	CYCGRG	3 cut(s)	175, 655, 1544
Aor13HI	TCCGGA	1 cut(s)	1801
AoxI	GGCC	7 cut(s)	219, 315, 348, 535, 611, 658, 979
ApaI	GGGCCC	2 cut(s)	662, 983
ApeKI	GCWGC	5 cut(s)	234, 902, 1127, 1148, 1681
ApoI	RAATTY	2 cut(s)	870, 1063
AsiGI	ACCGGT	1 cut(s)	1739
Asp700I	GAANNNNTTC	1 cut(s)	1773
AspLEI	GCGC	4 cut(s)	151, 153, 234, 695
AspS9I	GGNCC	6 cut(s)	253, 349, 658, 659, 979, 980
AsuC2I	CCSGG	3 cut(s)	319, 656, 657
AsuHPI	GGTGA	3 cut(s)	389, 436, 1334
AvaI	CYCGRG	3 cut(s)	175, 655, 1544
AvaII	GGWCC	1 cut(s)	253
AxyI	CCTNAGG	2 cut(s)	539, 777
BaeGI	GKGCMC	2 cut(s)	662, 983
BaeI	ACNNNNGTAYC	4 cut(s)	51, 84, 1915, 1948
BanI	GGYRCC	1 cut(s)	1742
BanII	GRGCYC	3 cut(s)	182, 662, 983
BbsI	GAAGAC	3 cut(s)	737, 1004, 1602
Bbv12I	GWGCWC	2 cut(s)	972, 1438
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	5 cut(s)	221, 914, 1139, 1160, 1668
BccI	CCATC	4 cut(s)	12, 120, 970, 1720
BceAI	ACGGC	1 cut(s)	184
BciT130I	CCWGG	9 cut(s)	401, 603, 627, 675, 739, 791, 1747, 1878, 2008
BciVI	GTATCC	1 cut(s)	79
BcnI	CCSGG	3 cut(s)	319, 656, 657
BcoDI	GTCTC	3 cut(s)	135, 717, 1399
BfaI	CTAG	3 cut(s)	108, 953, 1019
BfmI	CTRYAG	2 cut(s)	1278, 1836
BfuAI	ACCTGC	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	79
BglII	AGATCT	2 cut(s)	783, 1381
BisI	GCNGC	9 cut(s)	172, 235, 274, 745, 903, 1125, 1128, 1149, 1682
BlsI	GCNGC	9 cut(s)	173, 236, 275, 746, 904, 1126, 1129, 1150, 1683
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	3 cut(s)	175, 655, 1544
BmgT120I	GGNCC	6 cut(s)	253, 349, 658, 659, 979, 980
BmiI	GGNNCC	9 cut(s)	181, 502, 597, 660, 661, 748, 981, 1623, 1744
BmsI	GCATC	8 cut(s)	178, 554, 694, 700, 706, 1045, 1321, 1822
BpiI	GAAGAC	3 cut(s)	737, 1004, 1602
BplI	GAGNNNNNCTC	2 cut(s)	117, 149
BpmI	CTGGAG	4 cut(s)	696, 720, 741, 1254
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	3 cut(s)	319, 656, 657
Bsa29I	ATCGAT	1 cut(s)	1760
BsaBI	GATNNNNATC	1 cut(s)	1756
BsaHI	GRCGYC	1 cut(s)	590
BsaWI	WCCGGW	2 cut(s)	1739, 1801
BsaXI	ACNNNNNCTCC	6 cut(s)	669, 699, 1227, 1257, 1362, 1392
Bsc4I	CCNNNNNNNGG	7 cut(s)	416, 626, 632, 756, 1298, 1746, 1883
Bse118I	RCCGGY	2 cut(s)	304, 1739
Bse1I	ACTGG	2 cut(s)	703, 991
Bse21I	CCTNAGG	2 cut(s)	539, 777
Bse3DI	GCAATG	2 cut(s)	970, 1524
Bse8I	GATNNNNATC	1 cut(s)	1756
BseAI	TCCGGA	1 cut(s)	1801
BseBI	CCWGG	9 cut(s)	401, 603, 627, 675, 739, 791, 1747, 1878, 2008
BseCI	ATCGAT	1 cut(s)	1760
BseGI	GGATG	4 cut(s)	545, 1312, 1810, 1886
BseJI	GATNNNNATC	1 cut(s)	1756
BseLI	CCNNNNNNNGG	7 cut(s)	416, 626, 632, 756, 1298, 1746, 1883
BseMI	GCAATG	2 cut(s)	970, 1524
BseMII	CTCAG	5 cut(s)	530, 554, 629, 1194, 1284
BseNI	ACTGG	2 cut(s)	703, 991
BsePI	GCGCGC	1 cut(s)	149
BseRI	GAGGAG	4 cut(s)	285, 288, 326, 1865
BseSI	GKGCMC	2 cut(s)	662, 983
BseXI	GCAGC	5 cut(s)	221, 914, 1139, 1160, 1668
BsgI	GTGCAG	2 cut(s)	74, 164
Bsh1236I	CGCG	3 cut(s)	151, 232, 693
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	7 cut(s)	221, 317, 350, 537, 613, 660, 981
BshNI	GGYRCC	1 cut(s)	1742
BshTI	ACCGGT	1 cut(s)	1739
BshVI	ATCGAT	1 cut(s)	1760
BsiEI	CGRYCG	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	972, 1438
BsiHKCI	CYCGRG	3 cut(s)	175, 655, 1544
BsiSI	CCGG	6 cut(s)	183, 305, 318, 656, 1740, 1802
BslFI	GGGAC	2 cut(s)	569, 1919
BslI	CCNNNNNNNGG	7 cut(s)	416, 626, 632, 756, 1298, 1746, 1883
BsmAI	GTCTC	3 cut(s)	135, 717, 1399
BsmBI	CGTCTC	1 cut(s)	1399
BsmFI	GGGAC	2 cut(s)	569, 1919
BsnI	GGCC	7 cut(s)	221, 317, 350, 537, 613, 660, 981
BsoBI	CYCGRG	3 cut(s)	175, 655, 1544
Bsp120I	GGGCCC	2 cut(s)	658, 979
Bsp1286I	GDGCHC	5 cut(s)	182, 662, 972, 983, 1438
Bsp13I	TCCGGA	1 cut(s)	1801
Bsp1407I	TGTACA	1 cut(s)	1141
Bsp143I	GATC	8 cut(s)	163, 268, 566, 783, 989, 1381, 1519, 1757
BspANI	GGCC	7 cut(s)	221, 317, 350, 537, 613, 660, 981
BspCNI	CTCAG	5 cut(s)	531, 555, 628, 1195, 1285
BspDI	ATCGAT	1 cut(s)	1760
BspEI	TCCGGA	1 cut(s)	1801
BspFNI	CGCG	3 cut(s)	151, 232, 693
BspLI	GGNNCC	9 cut(s)	181, 502, 597, 660, 661, 748, 981, 1623, 1744
BspMI	ACCTGC	1 cut(s)	96
BspPI	GGATC	2 cut(s)	171, 997
BspT107I	GGYRCC	1 cut(s)	1742
BsrDI	GCAATG	2 cut(s)	970, 1524
BsrFI	RCCGGY	2 cut(s)	304, 1739
BsrGI	TGTACA	1 cut(s)	1141
BsrI	ACTGG	2 cut(s)	703, 991
BssAI	RCCGGY	2 cut(s)	304, 1739
BssHII	GCGCGC	1 cut(s)	149
BssMI	GATC	8 cut(s)	163, 268, 566, 783, 989, 1381, 1519, 1757
BssNI	GRCGYC	1 cut(s)	590
BssT1I	CCWWGG	2 cut(s)	415, 1636
Bst2UI	CCWGG	9 cut(s)	401, 603, 627, 675, 739, 791, 1747, 1878, 2008
Bst4CI	ACNGT	2 cut(s)	248, 1910
Bst6I	CTCTTC	2 cut(s)	118, 469
BstACI	GRCGYC	1 cut(s)	590
BstAUI	TGTACA	1 cut(s)	1141
BstC8I	GCNNGC	7 cut(s)	147, 151, 193, 230, 306, 1008, 1251
BstDEI	CTNAG	9 cut(s)	539, 563, 615, 777, 1194, 1203, 1293, 1703, 1731
BstDSI	CCRYGG	1 cut(s)	1316
BstF5I	GGATG	4 cut(s)	545, 1312, 1810, 1886
BstFNI	CGCG	3 cut(s)	151, 232, 693
BstHHI	GCGC	4 cut(s)	151, 153, 234, 695
BstKTI	GATC	8 cut(s)	166, 271, 569, 786, 992, 1384, 1522, 1760
BstMAI	GTCTC	3 cut(s)	135, 717, 1399
BstMBI	GATC	8 cut(s)	163, 268, 566, 783, 989, 1381, 1519, 1757
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 192, 234, 314, 369, 587, 1721
BstNI	CCWGG	9 cut(s)	401, 603, 627, 675, 739, 791, 1747, 1878, 2008
BstNSI	RCATGY	2 cut(s)	13, 2023
BstSFI	CTRYAG	2 cut(s)	1278, 1836
BstSLI	GKGCMC	2 cut(s)	662, 983
BstUI	CGCG	3 cut(s)	151, 232, 693
BstV1I	GCAGC	5 cut(s)	221, 914, 1139, 1160, 1668
BstV2I	GAAGAC	3 cut(s)	737, 1004, 1602
BstX2I	RGATCY	3 cut(s)	783, 989, 1381
BstYI	RGATCY	3 cut(s)	783, 989, 1381
Bsu15I	ATCGAT	1 cut(s)	1760
Bsu36I	CCTNAGG	2 cut(s)	539, 777
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	7 cut(s)	221, 317, 350, 537, 613, 660, 981
BsuTUI	ATCGAT	1 cut(s)	1760
BtgI	CCRYGG	1 cut(s)	1316
BtgZI	GCGATG	3 cut(s)	101, 201, 1739
BtsCI	GGATG	4 cut(s)	545, 1312, 1810, 1886
BtsIMutI	CAGTG	1 cut(s)	1959
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	7 cut(s)	147, 151, 193, 230, 306, 1008, 1251
CaiI	CAGNNNCTG	2 cut(s)	719, 1615
CfoI	GCGC	4 cut(s)	151, 153, 234, 695
Cfr10I	RCCGGY	2 cut(s)	304, 1739
Cfr13I	GGNCC	6 cut(s)	253, 349, 658, 659, 979, 980
Cfr9I	CCCGGG	1 cut(s)	655
ClaI	ATCGAT	1 cut(s)	1760
CseI	GACGC	1 cut(s)	579
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	3 cut(s)	1142, 1613, 1648
CspAI	ACCGGT	1 cut(s)	1739
CviAII	CATG	7 cut(s)	10, 878, 1453, 1666, 1711, 1789, 2020
CviQI	GTAC	3 cut(s)	1142, 1613, 1648
DdeI	CTNAG	9 cut(s)	539, 563, 615, 777, 1194, 1203, 1293, 1703, 1731
DpnI	GATC	8 cut(s)	165, 270, 568, 785, 991, 1383, 1521, 1759
DpnII	GATC	8 cut(s)	163, 268, 566, 783, 989, 1381, 1519, 1757
DraI	TTTAAA	1 cut(s)	1212
DraIII	CACNNNGTG	1 cut(s)	1322
Eam1104I	CTCTTC	2 cut(s)	118, 469
EarI	CTCTTC	2 cut(s)	118, 469
EciI	GGCGGA	2 cut(s)	291, 323
Eco130I	CCWWGG	2 cut(s)	415, 1636
Eco24I	GRGCYC	3 cut(s)	182, 662, 983
Eco32I	GATATC	1 cut(s)	1351
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	323, 1614
Eco81I	CCTNAGG	2 cut(s)	539, 777
Eco88I	CYCGRG	3 cut(s)	175, 655, 1544
EcoO109I	RGGNCCY	2 cut(s)	349, 659
EcoRII	CCWGG	9 cut(s)	399, 601, 625, 673, 737, 789, 1745, 1876, 2006
EcoRV	GATATC	1 cut(s)	1351
EcoT14I	CCWWGG	2 cut(s)	415, 1636
EcoT38I	GRGCYC	3 cut(s)	182, 662, 983
ErhI	CCWWGG	2 cut(s)	415, 1636
Esp3I	CGTCTC	1 cut(s)	1399
FaeI	CATG	7 cut(s)	13, 881, 1456, 1669, 1714, 1792, 2023
FalI	AAGNNNNNCTT	4 cut(s)	1338, 1370, 1587, 1619
FaqI	GGGAC	2 cut(s)	569, 1919
FatI	CATG	7 cut(s)	9, 877, 1452, 1665, 1710, 1788, 2019
FauI	CCCGC	2 cut(s)	200, 237
FauNDI	CATATG	2 cut(s)	571, 1531
Fnu4HI	GCNGC	9 cut(s)	172, 235, 274, 745, 903, 1125, 1128, 1149, 1682
FokI	GGATG	4 cut(s)	532, 1299, 1817, 1893
FriOI	GRGCYC	3 cut(s)	182, 662, 983
Fsp4HI	GCNGC	9 cut(s)	172, 235, 274, 745, 903, 1125, 1128, 1149, 1682
FspBI	CTAG	3 cut(s)	108, 953, 1019
GlaI	GCGC	4 cut(s)	150, 152, 233, 694
GluI	GCNGC	9 cut(s)	172, 235, 274, 745, 903, 1125, 1128, 1149, 1682
GsuI	CTGGAG	4 cut(s)	696, 720, 741, 1254
HaeIII	GGCC	7 cut(s)	221, 317, 350, 537, 613, 660, 981
HapII	CCGG	6 cut(s)	183, 305, 318, 656, 1740, 1802
HgaI	GACGC	1 cut(s)	579
HhaI	GCGC	4 cut(s)	151, 153, 234, 695
Hin1I	GRCGYC	1 cut(s)	590
Hin1II	CATG	7 cut(s)	13, 881, 1456, 1669, 1714, 1792, 2023
Hin6I	GCGC	4 cut(s)	149, 151, 232, 693
HinP1I	GCGC	4 cut(s)	149, 151, 232, 693
HincII	GTYRAC	1 cut(s)	1183
HindII	GTYRAC	1 cut(s)	1183
HpaII	CCGG	6 cut(s)	183, 305, 318, 656, 1740, 1802
HphI	GGTGA	3 cut(s)	389, 436, 1334
Hpy166II	GTNNAC	4 cut(s)	60, 1168, 1183, 1285
Hpy188I	TCNGA	8 cut(s)	140, 268, 392, 564, 595, 1402, 1987, 1999
Hpy188III	TCNNGA	9 cut(s)	797, 912, 973, 1233, 1292, 1385, 1802, 1866, 1931
Hpy8I	GTNNAC	4 cut(s)	60, 1168, 1183, 1285
Hpy99I	CGWCG	2 cut(s)	527, 595
HpyAV	CCTTC	7 cut(s)	250, 559, 754, 1192, 1265, 1291, 1937
HpyCH4III	ACNGT	2 cut(s)	248, 1910
HpyCH4IV	ACGT	3 cut(s)	1001, 1287, 1558
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 192, 234, 314, 369, 587, 1721
HpyF3I	CTNAG	9 cut(s)	539, 563, 615, 777, 1194, 1203, 1293, 1703, 1731
HpySE526I	ACGT	3 cut(s)	1001, 1287, 1558
Hsp92I	GRCGYC	1 cut(s)	590
Hsp92II	CATG	7 cut(s)	13, 881, 1456, 1669, 1714, 1792, 2023
HspAI	GCGC	4 cut(s)	149, 151, 232, 693
Kpn2I	TCCGGA	1 cut(s)	1801
KroI	GCCGGC	1 cut(s)	304
KroNI	GCCGGC	1 cut(s)	306
Kzo9I	GATC	8 cut(s)	163, 268, 566, 783, 989, 1381, 1519, 1757
LmnI	GCTCC	8 cut(s)	51, 185, 242, 412, 595, 752, 1370, 1441
Lsp1109I	GCAGC	5 cut(s)	221, 914, 1139, 1160, 1668
LweI	GCATC	8 cut(s)	178, 554, 694, 700, 706, 1045, 1321, 1822
MabI	ACCWGGT	1 cut(s)	399
MaeI	CTAG	3 cut(s)	108, 953, 1019
MaeII	ACGT	3 cut(s)	1001, 1287, 1558
MaeIII	GTNAC	1 cut(s)	1468
MalI	GATC	8 cut(s)	165, 270, 568, 785, 991, 1383, 1521, 1759
MboI	GATC	8 cut(s)	163, 268, 566, 783, 989, 1381, 1519, 1757
MfeI	CAATTG	2 cut(s)	367, 607
MflI	RGATCY	3 cut(s)	783, 989, 1381
MhlI	GDGCHC	5 cut(s)	182, 662, 972, 983, 1438
MluCI	AATT	6 cut(s)	367, 607, 751, 870, 1063, 1502
MlyI	GAGTC	5 cut(s)	137, 1530, 1701, 1862, 1991
MmeI	TCCRAC	3 cut(s)	415, 573, 1965
MreI	CGCCGGCG	1 cut(s)	304
MroI	TCCGGA	1 cut(s)	1801
MroNI	GCCGGC	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	1773
MseI	TTAA	6 cut(s)	681, 1067, 1211, 1589, 1754, 1809
MslI	CAYNNNNRTG	2 cut(s)	140, 425
MspA1I	CMGCKG	2 cut(s)	55, 1130
MspI	CCGG	6 cut(s)	183, 305, 318, 656, 1740, 1802
MssI	GTTTAAAC	1 cut(s)	1212
MunI	CAATTG	2 cut(s)	367, 607
MvaI	CCWGG	9 cut(s)	401, 603, 627, 675, 739, 791, 1747, 1878, 2008
MvnI	CGCG	3 cut(s)	151, 232, 693
MwoI	GCNNNNNNNGC	9 cut(s)	52, 117, 177, 192, 234, 314, 369, 587, 1721
NaeI	GCCGGC	1 cut(s)	306
NciI	CCSGG	3 cut(s)	319, 656, 657
NdeI	CATATG	2 cut(s)	571, 1531
NdeII	GATC	8 cut(s)	163, 268, 566, 783, 989, 1381, 1519, 1757
NgoMIV	GCCGGC	1 cut(s)	304
NlaIII	CATG	7 cut(s)	13, 881, 1456, 1669, 1714, 1792, 2023
NlaIV	GGNNCC	9 cut(s)	181, 502, 597, 660, 661, 748, 981, 1623, 1744
NspI	RCATGY	2 cut(s)	13, 2023
OliI	CACNNNNGTG	1 cut(s)	425
PaqCI	CACCTGC	1 cut(s)	96
PauI	GCGCGC	1 cut(s)	149
PdiI	GCCGGC	1 cut(s)	306
PdmI	GAANNNNTTC	1 cut(s)	1773
PfeI	GAWTC	7 cut(s)	908, 1100, 1415, 1798, 1862, 1949, 1994
PinAI	ACCGGT	1 cut(s)	1739
PkrI	GCNGC	9 cut(s)	173, 236, 275, 746, 904, 1126, 1129, 1150, 1683
Ple19I	CGATCG	1 cut(s)	271
PleI	GAGTC	5 cut(s)	136, 1530, 1701, 1861, 1990
PmeI	GTTTAAAC	1 cut(s)	1212
PpsI	GAGTC	5 cut(s)	136, 1530, 1701, 1861, 1990
PsiI	TTATAA	1 cut(s)	855
Psp1406I	AACGTT	1 cut(s)	1287
Psp6I	CCWGG	9 cut(s)	399, 601, 625, 673, 737, 789, 1745, 1876, 2006
PspGI	CCWGG	9 cut(s)	399, 601, 625, 673, 737, 789, 1745, 1876, 2006
PspN4I	GGNNCC	9 cut(s)	181, 502, 597, 660, 661, 748, 981, 1623, 1744
PspOMI	GGGCCC	2 cut(s)	658, 979
PspPI	GGNCC	6 cut(s)	253, 349, 658, 659, 979, 980
PstNI	CAGNNNCTG	2 cut(s)	719, 1615
PsuI	RGATCY	3 cut(s)	783, 989, 1381
PteI	GCGCGC	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	1130
RsaI	GTAC	3 cut(s)	1143, 1614, 1649
RsaNI	GTAC	3 cut(s)	1142, 1613, 1648
RseI	CAYNNNNRTG	2 cut(s)	140, 425
SaqAI	TTAA	6 cut(s)	681, 1067, 1211, 1589, 1754, 1809
SatI	GCNGC	9 cut(s)	172, 235, 274, 745, 903, 1125, 1128, 1149, 1682
Sau3AI	GATC	8 cut(s)	163, 268, 566, 783, 989, 1381, 1519, 1757
Sau96I	GGNCC	6 cut(s)	253, 349, 658, 659, 979, 980
SchI	GAGTC	5 cut(s)	137, 1530, 1701, 1862, 1991
SduI	GDGCHC	5 cut(s)	182, 662, 972, 983, 1438
SexAI	ACCWGGT	1 cut(s)	399
SfaNI	GCATC	8 cut(s)	178, 554, 694, 700, 706, 1045, 1321, 1822
SfcI	CTRYAG	2 cut(s)	1278, 1836
SgrAI	CRCCGGYG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	253
SmaI	CCCGGG	1 cut(s)	657
SmiMI	CAYNNNNRTG	2 cut(s)	140, 425
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	6 cut(s)	367, 607, 751, 870, 1063, 1502
SspI	AATATT	2 cut(s)	1107, 1569
SspMI	CTAG	3 cut(s)	108, 953, 1019
StyI	CCWWGG	2 cut(s)	415, 1636
TaaI	ACNGT	2 cut(s)	248, 1910
TaiI	ACGT	3 cut(s)	1004, 1290, 1561
TaqI	TCGA	6 cut(s)	1024, 1098, 1269, 1760, 1900, 1965
TasI	AATT	6 cut(s)	367, 607, 751, 870, 1063, 1502
TatI	WGTACW	2 cut(s)	1141, 1647
TauI	GCSGC	4 cut(s)	174, 276, 747, 1127
TfiI	GAWTC	7 cut(s)	908, 1100, 1415, 1798, 1862, 1949, 1994
Tru1I	TTAA	6 cut(s)	681, 1067, 1211, 1589, 1754, 1809
Tru9I	TTAA	6 cut(s)	681, 1067, 1211, 1589, 1754, 1809
TscAI	CASTG	1 cut(s)	1959
TseI	GCWGC	5 cut(s)	234, 902, 1127, 1148, 1681
TspDTI	ATGAA	2 cut(s)	1191, 1682
TspGWI	ACGGA	4 cut(s)	648, 1433, 1634, 1706
TspMI	CCCGGG	1 cut(s)	655
TspRI	CASTG	1 cut(s)	1959
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	2 cut(s)	870, 1063
XceI	RCATGY	2 cut(s)	13, 2023
XcmI	CCANNNNNNNNNTGG	1 cut(s)	606
XmaI	CCCGGG	1 cut(s)	655
XmnI	GAANNNNTTC	1 cut(s)	1773
XspI	CTAG	3 cut(s)	108, 953, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.