Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003434

Physical Location & Seq

Genomic Coordinates Forward (+)

22346537 .. 22361330

Gene Structure 14794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1106400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2757 bp

ATGGTGATGGCTGAGAATGAGGTTAGGGATGACCAGAGGGACCTCAATGTCAATGGCGGCGGGCCCAAGTCCCCATGGAAGACTCCGGTCTCCCTCGAATCTTCCGTCATGGCCGCTGAGTCCTGGCCTGCTCTGGCCCAAGCCCAAAGGCCCAAGAGTTTGGATGCTGCCGCAAAGCCACCAGCTGCGCAGCCGTCTACCCTGCCCGCGCCTGTGCAGGGATTAGTCATGCAGCAGAAGTCGAATGGGTCTGGAAACTCCAACGCTTCACACAAGCATTCATCATCACATCACCAAAAAGGCCCTAGGCACAACCCAAATGCTGCACCTCCTTTTCCAGTACCCGTACCCTACCATCAACAACCACTTCCTCCTGTTTTTCATACCATGGTACAACCCCACATTCTGGCTTCTGGGTATGCTTACCAGCCATACGCTGGACATCCAAGTGTTGGAAATCATATTGCAAAATCTGGATGTGAGACCTCAGTGCAAAATTTTGTGCAACCAGTTCAACCTCAGCCACGAGGTAATCCAAATGCTTATGGTGTCAATTTTTCTACTAGAAGACCCAACATGCACGAACATGGTGGCCCTTGGAATCATACTTGGCATCAACAGCGAGCATTTAACCCCAGAGAGAACATTCCTGTGCAGCAGGGTGTTGGACCTATCCCTTTCTTAAGACCTCAGTTTTTTGGTCCAGCCCCAGGGTTCATGGTCGGCCCAAGCATTCCTGGACCTGCACCCATATGCTATCTTCCAGTTCCACCACTGGGCGCAGTTAGGGGACCTCATCCTCCTAGCTTTATGCCGCATCCTTTAAATCCGGGGGCTCCATTACCACCCTCAGAAACACATACATTATCATTGAGGGACAATATTATAAAGCAAATAGAGTATTATTTCAGCGATGAAAATCTAAAGAATGACCGTTACTTAATTTCGTTGATGGATGACCAAGGATGGGTCCCAATAACCACCATTGCGGACTTTAAAAGGGTTAAGAAAATGTGTACAGACATAGCATTTATCCTTGACTCACTGCTGGGCTCAACTACTGTAGAAGTGCAGGCTAACAAGATACGAAGACGTGATGAGTGGTCAAAGTGGATTGCAGATTCTGCAGACTCAATGTTAACTTCCAAGCCGCAAACCCCCTTGGTTCAAGTTGAAGATAGGTATATCAATGCTCCTGAGAATAATGCCAGCAATGATAGAAGGAAAACTTTTGAGGAAAAAGTTGAAGTTTTATCAGATGGAAAAAATTTGATGTCGTGCATGCCATCAAATACCATACCTGACACTGATAATCAATTTGATGGTGGATCACTAGCATCTTCTGATAATAATAGTGCTTTAAATGAAAAGTTGACTTCCAAATCAAATTGCAAGTCCTTGGATCCCAAAATGGATCATTGCTCAGACCGCCCATACCACTCAGAGGGAATTGAAACTGGAAGATATGATGATGATAGGCCTGAAGGCATGCCTTCAGATATGGATATGAAGAATCTTGGAAATCTGTCTAATGATTTTGCAAACACATTTATGCTGGATGAAGAGCTAGAGCTTGAGCAGAAAATAATAAAGGATGATCGTTCTCCTATTAGAAGTGTTGGCCGGACGATTGATGATGAATATGATGAGATTGTAGTCAATGATCAGGATGTCCAGAGACTTGTAATTGTCACCCAGAATAGTAGAGTAGGCGAAGGATCTAAACCTGATGATAAAGAATCAAAAACCCTTTCCAATGAGCTAGCGTCTGCTATAAATGATGGGCTTTACTTCTATGAGCAGGAACTGAAAACCAAGCGATCAAACCGTAAAAAGAACAGCACCAGCCATGACAATAGAGATGCAAACTCAAGATTTTCAAGCATTTCCAAAGGCTTTTCAAAATTAAAGCCTGGTGAAATATCTGGCAGTGGTATTGGCATTGAAGAGTCTGGAAGTGCTAATTCACGGAAGAAGCAAAATAGACTCTCCCAAAATCATCAATCGTCCCCTAGACAGCGTTTCTTCTCAAGCAACTTTAGAAATTATGGTACTGGTCGGAACAATCTAGGAGTTGTATCAGAAAGTCCACCAAGTAACTCTGTTGGCTTTTTCTTTAGTTCCACGCCTCCTGAAACTCATGGACCAAGGCCTTCAAAATTGAGTGTCTCTCCTCATGGGTTTCTCTCAGGCAGTAGTCCACCAGTGGGTTCTGTGCCAAAGTCCTTTCCACCATTTCAGCATCCAAGTCATCAACTTCTGGAAGAAAATGGTTTTAAACAGCAGAAGTACCTCAAGTATCATAAGCGGTGCCTGAATGACAGGAAGAAGTTGGGAATTGGTTGCAGTGAGGAAATGAATACTCTCTATAGATTTTGGTGTTATTTTCTAAGAAACATGTTCAACTCTTCAATGTATGATGAGTTCCGAAAGTACGCACTTGAAGATGCTGCTGCTGGTTATAATTATGGAGTAGAGTGCCTTTTCAGGTTCTATAGTTATGGTTTGGAGAAGGATTTTAGAGAGGACTTGTACAAGGACTTTGAACAGCTCACACTTGACTTTTACCATAAAGGCAATCTCTATGGCCTGGAAAAATATTGGGCTTTTCATCATTATCGTCAACAACAGGATCAGAAAGAGTCTCTAATGAAACATCCGGAATTGGATCAGTTGCTCAGTGAAGTATACTGTCGCTTGGAGGACTTTCGTGCCAAAGAGAGAGCCACTGCCATGAAAGAGAGGAGTCACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

919

Amino Acids

103.34

Weight (kDa)

7.03

Isoelectric Point (pI)

52.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	295 - 349	3.1e-23	La domain
LARP1_HEAT	PF21071	748 - 895	1.4e-61	LARP1 HEAT repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21160 AT5G21160 AT5G21160
fragaria_vesca	FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710
malus_domestica	MD00G1106400.v1.1 MD11G1183000.v1.1
prunus_persica	Prupe.6G155800_v2.0.a1 Prupe.6G155800_v2.0.a1 Prupe.6G155800_v2.0.a1 Prupe.6G155800_v2.0.a1
pyrus_communis	pycom5153684g00350
rosa_chinensis	RchiOBHm_Chr5g0050001
rosa_laevigata	RLG00000034676
rosa_multiflora	Rmu_sc0000333.1_g000023
rosa_roxburghii	Rroxscaffold_1G00031150
rosa_rugosa	Rorug05G0256500
rosa_samantha	Rh5AG329600 Rh5BG340300 Rh5CG366300 Rh5DG352900
rosa_wichuraiana	Rw5G031120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	887, 2463
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc16I	TGCGCA	1 cut(s)	189
Acc36I	ACCTGC	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	2310
AccB7I	CCANNNNNTGG	3 cut(s)	406, 437, 452
AccI	GTMKAC	2 cut(s)	197, 2688
AccII	CGCG	1 cut(s)	209
AccIII	TCCGGA	1 cut(s)	2659
AclWI	GGATC	7 cut(s)	1336, 1397, 1410, 1422, 1726, 2640, 2676
AcoI	YGGCCR	2 cut(s)	111, 1621
AcsI	RAATTY	2 cut(s)	496, 1267
AcuI	CTGAAG	2 cut(s)	1479, 1503
AfaI	GTAC	8 cut(s)	342, 348, 393, 1018, 2053, 2291, 2435, 2534
AfiI	CCNNNNNNNGG	9 cut(s)	218, 406, 437, 452, 710, 776, 967, 1444, 2207
AflII	CTTAAG	1 cut(s)	682
AflIII	ACRYGT	1 cut(s)	2397
AjiI	CACGTC	1 cut(s)	1094
AjnI	CCWGG	5 cut(s)	122, 709, 736, 1912, 2589
AluBI	AGCT	6 cut(s)	185, 807, 1567, 1573, 1762, 2551
AluI	AGCT	6 cut(s)	185, 807, 1567, 1573, 1762, 2551
Alw26I	GTCTC	5 cut(s)	94, 476, 1672, 2173, 2649
AlwI	GGATC	7 cut(s)	1336, 1397, 1410, 1422, 1726, 2640, 2676
AlwNI	CAGNNNCTG	2 cut(s)	1124, 1807
Aor13HI	TCCGGA	1 cut(s)	2659
ApaI	GGGCCC	1 cut(s)	66
ApeKI	GCWGC	8 cut(s)	167, 185, 190, 232, 323, 655, 2450, 2453
ApoI	RAATTY	2 cut(s)	496, 1267
ArsI	GACNNNNNNTTYG	4 cut(s)	90, 122, 1379, 1411
AspA2I	CCTAGG	1 cut(s)	305
AspLEI	GCGC	3 cut(s)	190, 211, 782
AsuC2I	CCSGG	1 cut(s)	831
AsuHPI	GGTGA	5 cut(s)	16, 284, 1684, 1928, 2741
AsuNHI	GCTAGC	1 cut(s)	1762
AvaII	GGWCC	7 cut(s)	40, 668, 701, 740, 791, 970, 2144
AvrII	CCTAGG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	66
BamHI	GGATCC	1 cut(s)	1402
BanI	GGYRCC	1 cut(s)	2310
BanII	GRGCYC	3 cut(s)	66, 838, 1055
BauI	CACGAG	1 cut(s)	525
BbsI	GAAGAC	3 cut(s)	86, 574, 1096
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	8 cut(s)	154, 172, 202, 244, 310, 667, 2437, 2440
BccI	CCATC	7 cut(s)	363, 946, 960, 1253, 1294, 1316, 1775
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	5 cut(s)	124, 711, 738, 1914, 2591
BclI	TGATCA	1 cut(s)	1663
BcnI	CCSGG	1 cut(s)	831
BcoDI	GTCTC	5 cut(s)	94, 476, 1672, 2173, 2649
BfaI	CTAG	8 cut(s)	306, 564, 804, 1334, 1568, 1763, 2013, 2069
BfmI	CTRYAG	4 cut(s)	1062, 1125, 2368, 2494
BfrI	CTTAAG	1 cut(s)	682
BfuAI	ACCTGC	1 cut(s)	751
BlnI	CCTAGG	1 cut(s)	305
Bme1390I	CCNGG	6 cut(s)	124, 711, 738, 831, 1914, 2591
Bme18I	GGWCC	7 cut(s)	40, 668, 701, 740, 791, 970, 2144
BmgBI	CACGTC	1 cut(s)	1094
BmiI	GGNNCC	8 cut(s)	41, 64, 792, 837, 971, 972, 1404, 2312
BmrFI	CCNGG	6 cut(s)	124, 711, 738, 831, 1914, 2591
BmrI	ACTGGG	1 cut(s)	785
BmsI	GCATC	7 cut(s)	154, 622, 826, 1346, 1852, 2251, 2437
BmtI	GCTAGC	1 cut(s)	1766
BmuI	ACTGGG	1 cut(s)	785
BoxI	GACNNNNGTC	1 cut(s)	86
BpiI	GAAGAC	3 cut(s)	86, 574, 1096
BplI	GAGNNNNNCTC	2 cut(s)	2155, 2187
Bpu10I	CCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	4 cut(s)	1595, 1855, 2014, 2279
BpuMI	CCSGG	1 cut(s)	831
BsaBI	GATNNNNATC	1 cut(s)	918
BsaI	GGTCTC	2 cut(s)	94, 476
BsaWI	WCCGGW	2 cut(s)	85, 2659
Bsc4I	CCNNNNNNNGG	9 cut(s)	218, 406, 437, 452, 710, 776, 967, 1444, 2207
Bse1I	ACTGG	8 cut(s)	338, 509, 764, 780, 1462, 2059, 2204, 2752
Bse3DI	GCAATG	3 cut(s)	984, 1219, 1417
Bse8I	GATNNNNATC	1 cut(s)	918
BseAI	TCCGGA	1 cut(s)	2659
BseBI	CCWGG	5 cut(s)	124, 711, 738, 1914, 2591
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	9 cut(s)	218, 406, 437, 452, 710, 776, 967, 1444, 2207
BseMI	GCAATG	3 cut(s)	984, 1219, 1417
BseNI	ACTGG	8 cut(s)	338, 509, 764, 780, 1462, 2059, 2204, 2752
BseRI	GAGGAG	1 cut(s)	2163
BseSI	GKGCMC	1 cut(s)	66
BseXI	GCAGC	8 cut(s)	154, 172, 202, 244, 310, 667, 2437, 2440
BseYI	CCCAGC	1 cut(s)	1048
BsgI	GTGCAG	5 cut(s)	236, 309, 674, 729, 1091
Bsh1236I	CGCG	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	2310
BsiSI	CCGG	4 cut(s)	86, 830, 1624, 2660
BslFI	GGGAC	6 cut(s)	53, 55, 804, 890, 956, 1993
BslI	CCNNNNNNNGG	9 cut(s)	218, 406, 437, 452, 710, 776, 967, 1444, 2207
BsmAI	GTCTC	5 cut(s)	94, 476, 1672, 2173, 2649
BsmFI	GGGAC	6 cut(s)	53, 55, 804, 890, 956, 1993
BsmI	GAATGC	2 cut(s)	277, 732
Bso31I	GGTCTC	2 cut(s)	94, 476
Bsp120I	GGGCCC	1 cut(s)	62
Bsp1286I	GDGCHC	3 cut(s)	66, 838, 1055
Bsp13I	TCCGGA	1 cut(s)	2659
Bsp1407I	TGTACA	2 cut(s)	1016, 2532
Bsp143I	GATC	9 cut(s)	1328, 1402, 1414, 1597, 1663, 1718, 1820, 2632, 2668
Bsp19I	CCATGG	2 cut(s)	74, 387
BspEI	TCCGGA	1 cut(s)	2659
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	8 cut(s)	41, 64, 792, 837, 971, 972, 1404, 2312
BspMAI	CTGCAG	1 cut(s)	1129
BspMI	ACCTGC	1 cut(s)	751
BspOI	GCTAGC	1 cut(s)	1766
BspPI	GGATC	7 cut(s)	1336, 1397, 1410, 1422, 1726, 2640, 2676
BspQI	GCTCTTC	1 cut(s)	1557
BspT107I	GGYRCC	1 cut(s)	2310
BspTI	CTTAAG	1 cut(s)	682
BspTNI	GGTCTC	2 cut(s)	94, 476
BsrDI	GCAATG	3 cut(s)	984, 1219, 1417
BsrGI	TGTACA	2 cut(s)	1016, 2532
BsrI	ACTGG	8 cut(s)	338, 509, 764, 780, 1462, 2059, 2204, 2752
BssMI	GATC	9 cut(s)	1328, 1402, 1414, 1597, 1663, 1718, 1820, 2632, 2668
BssNAI	GTATAC	1 cut(s)	2689
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	8 cut(s)	74, 305, 387, 596, 961, 1161, 1398, 2147
Bst1107I	GTATAC	1 cut(s)	2689
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	5 cut(s)	124, 711, 738, 1914, 2591
Bst4CI	ACNGT	4 cut(s)	935, 1063, 1829, 2693
Bst6I	CTCTTC	3 cut(s)	1557, 1941, 2413
BstAFI	CTTAAG	1 cut(s)	682
BstAPI	GCANNNNNTGC	1 cut(s)	1124
BstAUI	TGTACA	2 cut(s)	1016, 2532
BstC8I	GCNNGC	9 cut(s)	62, 129, 207, 624, 1074, 1210, 1283, 1490, 1764
BstDSI	CCRYGG	2 cut(s)	74, 387
BstFNI	CGCG	1 cut(s)	209
BstHHI	GCGC	3 cut(s)	190, 211, 782
BstKTI	GATC	9 cut(s)	1331, 1405, 1417, 1600, 1666, 1721, 1823, 2635, 2671
BstMAI	GTCTC	5 cut(s)	94, 476, 1672, 2173, 2649
BstMBI	GATC	9 cut(s)	1328, 1402, 1414, 1597, 1663, 1718, 1820, 2632, 2668
BstMWI	GCNNNNNNNGC	3 cut(s)	619, 1124, 1428
BstNI	CCWGG	5 cut(s)	124, 711, 738, 1914, 2591
BstNSI	RCATGY	4 cut(s)	580, 1285, 1492, 2401
BstPAI	GACNNNNGTC	1 cut(s)	86
BstSCI	CCNGG	6 cut(s)	122, 709, 736, 829, 1912, 2589
BstSFI	CTRYAG	4 cut(s)	1062, 1125, 2368, 2494
BstSLI	GKGCMC	1 cut(s)	66
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	8 cut(s)	154, 172, 202, 244, 310, 667, 2437, 2440
BstV2I	GAAGAC	3 cut(s)	86, 574, 1096
BstX2I	RGATCY	2 cut(s)	1402, 1718
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstYI	RGATCY	2 cut(s)	1402, 1718
BstZ17I	GTATAC	1 cut(s)	2689
BtgI	CCRYGG	2 cut(s)	74, 387
BtgZI	GCGATG	1 cut(s)	927
BtrI	CACGTC	1 cut(s)	1094
BtsI	GCAGTG	4 cut(s)	1043, 1936, 2353, 2727
BtsIMutI	CAGTG	9 cut(s)	495, 773, 1043, 1305, 1936, 2211, 2353, 2686, 2727
BveI	ACCTGC	1 cut(s)	751
Cac8I	GCNNGC	9 cut(s)	62, 129, 207, 624, 1074, 1210, 1283, 1490, 1764
CaiI	CAGNNNCTG	2 cut(s)	1124, 1807
CfoI	GCGC	3 cut(s)	190, 211, 782
CseI	GACGC	1 cut(s)	1755
Csp6I	GTAC	8 cut(s)	341, 347, 392, 1017, 2052, 2290, 2434, 2533
CviQI	GTAC	8 cut(s)	341, 347, 392, 1017, 2052, 2290, 2434, 2533
DpnI	GATC	9 cut(s)	1330, 1404, 1416, 1599, 1665, 1720, 1822, 2634, 2670
DpnII	GATC	9 cut(s)	1328, 1402, 1414, 1597, 1663, 1718, 1820, 2632, 2668
DraI	TTTAAA	4 cut(s)	825, 997, 1362, 2278
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
EaeI	YGGCCR	2 cut(s)	111, 1621
Eam1104I	CTCTTC	3 cut(s)	1557, 1941, 2413
EarI	CTCTTC	3 cut(s)	1557, 1941, 2413
Eco130I	CCWWGG	8 cut(s)	74, 305, 387, 596, 961, 1161, 1398, 2147
Eco147I	AGGCCT	2 cut(s)	1480, 2152
Eco24I	GRGCYC	3 cut(s)	66, 838, 1055
Eco31I	GGTCTC	2 cut(s)	94, 476
Eco47I	GGWCC	7 cut(s)	40, 668, 701, 740, 791, 970, 2144
Eco57I	CTGAAG	2 cut(s)	1479, 1503
EcoO109I	RGGNCCY	4 cut(s)	40, 302, 791, 970
EcoRII	CCWGG	5 cut(s)	122, 709, 736, 1912, 2589
EcoT14I	CCWWGG	8 cut(s)	74, 305, 387, 596, 961, 1161, 1398, 2147
EcoT38I	GRGCYC	3 cut(s)	66, 838, 1055
ErhI	CCWWGG	8 cut(s)	74, 305, 387, 596, 961, 1161, 1398, 2147
FalI	AAGNNNNNCTT	2 cut(s)	1213, 1245
FaqI	GGGAC	6 cut(s)	53, 55, 804, 890, 956, 1993
FauI	CCCGC	2 cut(s)	53, 214
FauNDI	CATATG	1 cut(s)	752
FbaI	TGATCA	1 cut(s)	1663
FblI	GTMKAC	2 cut(s)	197, 2688
FriOI	GRGCYC	3 cut(s)	66, 838, 1055
FspBI	CTAG	8 cut(s)	306, 564, 804, 1334, 1568, 1763, 2013, 2069
FspI	TGCGCA	1 cut(s)	189
GlaI	GCGC	3 cut(s)	189, 210, 781
GsaI	CCCAGC	1 cut(s)	1052
HapII	CCGG	4 cut(s)	86, 830, 1624, 2660
HgaI	GACGC	1 cut(s)	1755
HhaI	GCGC	3 cut(s)	190, 211, 782
Hin6I	GCGC	3 cut(s)	188, 209, 780
HinP1I	GCGC	3 cut(s)	188, 209, 780
HincII	GTYRAC	3 cut(s)	1140, 1374, 2624
HindII	GTYRAC	3 cut(s)	1140, 1374, 2624
HpaI	GTTAAC	1 cut(s)	1140
HpaII	CCGG	4 cut(s)	86, 830, 1624, 2660
HphI	GGTGA	5 cut(s)	16, 284, 1684, 1928, 2741
Hpy166II	GTNNAC	8 cut(s)	198, 1017, 1140, 1374, 2090, 2201, 2624, 2689
Hpy8I	GTNNAC	8 cut(s)	198, 1017, 1140, 1374, 2090, 2201, 2624, 2689
HpyAV	CCTTC	6 cut(s)	1215, 1478, 1503, 1709, 2163, 2506
HpyCH4III	ACNGT	4 cut(s)	935, 1063, 1829, 2693
HpyCH4IV	ACGT	1 cut(s)	1093
HpyF10VI	GCNNNNNNNGC	3 cut(s)	619, 1124, 1428
HpySE526I	ACGT	1 cut(s)	1093
HspAI	GCGC	3 cut(s)	188, 209, 780
KflI	GGGWCCC	1 cut(s)	970
Kpn2I	TCCGGA	1 cut(s)	2659
Ksp22I	TGATCA	1 cut(s)	1663
KspAI	GTTAAC	1 cut(s)	1140
Kzo9I	GATC	9 cut(s)	1328, 1402, 1414, 1597, 1663, 1718, 1820, 2632, 2668
LguI	GCTCTTC	1 cut(s)	1557
LmnI	GCTCC	2 cut(s)	841, 1198
Lsp1109I	GCAGC	8 cut(s)	154, 172, 202, 244, 310, 667, 2437, 2440
LweI	GCATC	7 cut(s)	154, 622, 826, 1346, 1852, 2251, 2437
MaeI	CTAG	8 cut(s)	306, 564, 804, 1334, 1568, 1763, 2013, 2069
MaeII	ACGT	1 cut(s)	1093
MaeIII	GTNAC	4 cut(s)	935, 1690, 2096, 2747
MalI	GATC	9 cut(s)	1330, 1404, 1416, 1599, 1665, 1720, 1822, 2634, 2670
MboI	GATC	9 cut(s)	1328, 1402, 1414, 1597, 1663, 1718, 1820, 2632, 2668
MflI	RGATCY	2 cut(s)	1402, 1718
MhlI	GDGCHC	3 cut(s)	66, 838, 1055
MlyI	GAGTC	8 cut(s)	76, 128, 1034, 1124, 1958, 1980, 2651, 2755
MmeI	TCCRAC	4 cut(s)	285, 433, 646, 2039
MroI	TCCGGA	1 cut(s)	2659
MslI	CAYNNNNRTG	6 cut(s)	447, 585, 650, 751, 1550, 2732
MspA1I	CMGCKG	2 cut(s)	116, 185
MspCI	CTTAAG	1 cut(s)	682
MspI	CCGG	4 cut(s)	86, 830, 1624, 2660
MspR9I	CCNGG	6 cut(s)	124, 711, 738, 831, 1914, 2591
Mva1269I	GAATGC	2 cut(s)	277, 732
MvaI	CCWGG	5 cut(s)	124, 711, 738, 1914, 2591
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	3 cut(s)	619, 1124, 1428
NciI	CCSGG	1 cut(s)	831
NcoI	CCATGG	2 cut(s)	74, 387
NdeI	CATATG	1 cut(s)	752
NdeII	GATC	9 cut(s)	1328, 1402, 1414, 1597, 1663, 1718, 1820, 2632, 2668
NheI	GCTAGC	1 cut(s)	1762
NlaIV	GGNNCC	8 cut(s)	41, 64, 792, 837, 971, 972, 1404, 2312
NmuCI	GTSAC	2 cut(s)	1690, 2747
NsbI	TGCGCA	1 cut(s)	189
NspI	RCATGY	4 cut(s)	580, 1285, 1492, 2401
PaeI	GCATGC	2 cut(s)	1285, 1492
PasI	CCCWGGG	1 cut(s)	710
PceI	AGGCCT	2 cut(s)	1480, 2152
PciI	ACATGT	1 cut(s)	2397
PciSI	GCTCTTC	1 cut(s)	1557
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	2 cut(s)	277, 732
PfeI	GAWTC	5 cut(s)	98, 601, 1121, 1513, 1739
PflMI	CCANNNNNTGG	3 cut(s)	406, 437, 452
PfoI	TCCNGGA	1 cut(s)	736
PleI	GAGTC	8 cut(s)	76, 127, 1034, 1124, 1957, 1980, 2650, 2754
PpsI	GAGTC	8 cut(s)	76, 127, 1034, 1124, 1957, 1980, 2650, 2754
PpuMI	RGGWCCY	3 cut(s)	40, 791, 970
PscI	ACATGT	1 cut(s)	2397
PshAI	GACNNNNGTC	1 cut(s)	86
PsiI	TTATAA	2 cut(s)	887, 2463
Psp5II	RGGWCCY	3 cut(s)	40, 791, 970
Psp6I	CCWGG	5 cut(s)	122, 709, 736, 1912, 2589
PspFI	CCCAGC	1 cut(s)	1048
PspGI	CCWGG	5 cut(s)	122, 709, 736, 1912, 2589
PspN4I	GGNNCC	8 cut(s)	41, 64, 792, 837, 971, 972, 1404, 2312
PspOMI	GGGCCC	1 cut(s)	62
PspPPI	RGGWCCY	3 cut(s)	40, 791, 970
PsrI	GAACNNNNNNTAC	2 cut(s)	2408, 2440
PstI	CTGCAG	1 cut(s)	1129
PstNI	CAGNNNCTG	2 cut(s)	1124, 1807
PsuI	RGATCY	2 cut(s)	1402, 1718
PvuII	CAGCTG	1 cut(s)	185
RsaI	GTAC	8 cut(s)	342, 348, 393, 1018, 2053, 2291, 2435, 2534
RsaNI	GTAC	8 cut(s)	341, 347, 392, 1017, 2052, 2290, 2434, 2533
RseI	CAYNNNNRTG	6 cut(s)	447, 585, 650, 751, 1550, 2732
SapI	GCTCTTC	1 cut(s)	1557
Sau3AI	GATC	9 cut(s)	1328, 1402, 1414, 1597, 1663, 1718, 1820, 2632, 2668
SchI	GAGTC	8 cut(s)	76, 128, 1034, 1124, 1958, 1980, 2651, 2755
ScrFI	CCNGG	6 cut(s)	124, 711, 738, 831, 1914, 2591
SduI	GDGCHC	3 cut(s)	66, 838, 1055
SfaNI	GCATC	7 cut(s)	154, 622, 826, 1346, 1852, 2251, 2437
SfcI	CTRYAG	4 cut(s)	1062, 1125, 2368, 2494
SinI	GGWCC	7 cut(s)	40, 668, 701, 740, 791, 970, 2144
SmiMI	CAYNNNNRTG	6 cut(s)	447, 585, 650, 751, 1550, 2732
SmlI	CTYRAG	5 cut(s)	682, 1574, 1870, 2029, 2294
SmoI	CTYRAG	5 cut(s)	682, 1574, 1870, 2029, 2294
SphI	GCATGC	2 cut(s)	1285, 1492
SseBI	AGGCCT	2 cut(s)	1480, 2152
SspI	AATATT	2 cut(s)	883, 2600
SspMI	CTAG	8 cut(s)	306, 564, 804, 1334, 1568, 1763, 2013, 2069
StuI	AGGCCT	2 cut(s)	1480, 2152
StyD4I	CCNGG	6 cut(s)	122, 709, 736, 829, 1912, 2589
StyI	CCWWGG	8 cut(s)	74, 305, 387, 596, 961, 1161, 1398, 2147
TaaI	ACNGT	4 cut(s)	935, 1063, 1829, 2693
TaiI	ACGT	1 cut(s)	1096
TaqI	TCGA	2 cut(s)	96, 242
TatI	WGTACW	2 cut(s)	1016, 2532
TauI	GCSGC	5 cut(s)	60, 116, 173, 817, 1153
TfiI	GAWTC	5 cut(s)	98, 601, 1121, 1513, 1739
TscAI	CASTG	9 cut(s)	495, 780, 1050, 1312, 1936, 2211, 2353, 2686, 2734
TseFI	GTSAC	2 cut(s)	1690, 2747
TseI	GCWGC	8 cut(s)	167, 185, 190, 232, 323, 655, 2450, 2453
Tsp45I	GTSAC	2 cut(s)	1690, 2747
TspGWI	ACGGA	2 cut(s)	94, 1984
TspRI	CASTG	9 cut(s)	495, 780, 1050, 1312, 1936, 2211, 2353, 2686, 2734
Van91I	CCANNNNNTGG	3 cut(s)	406, 437, 452
Vha464I	CTTAAG	1 cut(s)	682
VpaK11BI	GGWCC	7 cut(s)	40, 668, 701, 740, 791, 970, 2144
XapI	RAATTY	2 cut(s)	496, 1267
XceI	RCATGY	4 cut(s)	580, 1285, 1492, 2401
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434
XmaJI	CCTAGG	1 cut(s)	305
XmiI	GTMKAC	2 cut(s)	197, 2688
XspI	CTAG	8 cut(s)	306, 564, 804, 1334, 1568, 1763, 2013, 2069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.