Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003434

Physical Location & Seq

Genomic Coordinates Reverse (-)

48336591 .. 48346157

Gene Structure 9567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32763

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2700 bp

ATGGTGATGGCTGAAACTGATGAGCTCAATGTGAATGGTCCCAAATCCCCGTGGAAGACTCCGGTCGCCGCCGAAGAAGCTCCCGTCAATGGCATGGGTGCCGAGTCCTGGCCTGCTCTGGCTGACGCCCAGGCCCAGGCCCAGGCCCATAGGTCCAAGACTCCCGACCTTGCCACTCCTCTGCCTCCTCCGGGATTAATCTCGCAGCAAAAGACGAATCGGCCTGGAAACTCTAACGCTTCGCACAAGCATTCATCGTCACAATATCAAAAGGCAGGCCCTAAACGCAATCCAAATGTTGCACCTCCTTTCCCAGTACCCTTACCTTACCATCAACCATCACTTCCACCTGTTTTTCATACTATGGTACATCCACCACACATTGCTGCTTCTGGTTATGCTTTCCAGCCATACCCTGGACCCATTGCAAATGTTGAAAATCATATAGCAAAATCTGGATCTGAGACCCCGGTGCAAGGTTTTGTGCAACCGGTTCAGCCCCACCCACGAGGTAATCCAAATGCTTATGGTGTCAATTTTTCTTCTAGAAGACCCAATATGCAAGAGCCTGGTGGGCCTGGTGGCCATTGGAATCATGCTTGGTATCAGCAACGACCATTCAATCCCAGAGAGAACATTCCTATGCAACAGGGGGTTGGACCTAGGCCTTTCTTGAGGCCTCCATTTTTTGGTCCAGCTCCAGGGTTCATGGTTGGCCCAACCATTCCAGGACCTGTCCCCATGTGCTATGTTCCAGTTCCGCCGACTGGTGCAATTAGGGGACCTCATCCTCCCCACTTTATGCCACATCCTTTAAATCCAGGGGCTCCATTACTACACCCGGAGACACATCCGGTGGCTTTGAGGGATAATATTATAAAACAAATAGAGTATTATTTTAGTGATGAAAATCTAAAGAATGACAAGTACCTAATTTCATTGATGGATGACCAAGGGTGGGTGCCAGTAACCACTATTGCTGACTTTAAAAGGGTTAAGAAAATGTGTACAGACATGGCATTTATTCTTGATTCACTGCTGGGTTCAGCTACCGTAGAAGTGCAGGGCAACAAGATACGGAGACGAGTTGAGTGGTCAAAGTGGATTGCAACTTCTACAGACTCTACATCAAAACCGGCCCAACTTGAACAGAGGTCTATCAATGTTTTAGAGAATAGTGATGCCAGTGGTGATGGAAGGACCACTTGCGAGGAGAATGTTGAATTTTCATCATGTGAAAAGAATTTGATGGAGGACAAGCCATCAAATACCGAACATGGCCTTGATACTCTTGACATTGATGGTAGATTACCAGAGTTGACTTGTAATAATGGTGATAAGATTCGAAAGTCTACTGCCAAATCAAATTTTAAGTCCTCATATCTTAAAACGAATCATTGCTCAGACTGCCCTGACCAATCCAAGGGAACTGAGCCTTCAGATATGGATATGAAGAATCTTGGTGGTCTGTCAAGTGATTTTGCAAACACATTTATGCTCGACGAAGAGCTAGAGCTTGAGCAGAAAATAATAAAAAAGGATGATCTCTATCCCAGTAGAAGGGTTGATGATGAAGATGATGAGATTGTCGTCCATGATCAGGATGTCCAGAGACTTGTAATTGTTACCAGGAATTGCAGAGTTGGTGAAGGATCTAAAACTGATGATAAGGAATCAAAAACCATTACCAATGAGCTCGCTTCTGCTATAAACGAAGGCCTTTATTTCTATGAGCAGGAACTGAAAACCAAGCGATCAAACCGTAAAAAGAACAACTCCAGTTACGAAAATAGAGATGCAGGCTCAAGAGTTTCAAATTTGGCCAAAGGATTTTCAAATTTGAAACGTGCTGAAATATCTGGCAGTAACAGTGGCACTGAAGAGTCTATAAGTGCTAATTCCCGAAAGAAGCATAGCAAAAACTTCCAAAATCAACAGTCATCCCATAGACAGCGATTCTTCTCGAGCAACTTTAGAAATTATGGAACCGGTCGGAACTCTCTAGGAATCATATCTGAAAGTCCACCAAGTAACTCAGTTGGATTTTTCTTTAGTTCCACACCACCTGAAAATCATGGTCCAAGATCTTCCAAGTTGAGTATTTCTCCCCATGGGGTTCTCTCAGGGAGCAGTCCGCCAGTGGGTTCTGTGCCAAAGTCATTTCCACCATTTCAGCATCCAAGTCATCAGCTTCTAGAAGAAAATGGTTTCAAACAGCAGAAGTACCTAAAGTATCACAAGCGGTGCCTAAATGACAGGAAGAAGTTGGGAATCGGTTGCAGTGAGGAAATGAATACTTTATATAGATTTTGGTCGTATTTCCTAAGAAACATGTTCAACTGCTCAATGTATGATGAGTTCCGGAAATATGCACTTGAAGACGCTGCTGCTAGCTATCATTATGGACTAGAGTGCCTATTCAGATTCTATAGTTATGGGTTGGAGAAGGAATTTAGAGATGACCTGTATGGTGACTTTGAACAGCTGACTCTGGAGTTTTACCATAAAGGAAATCTGTATGGCCTGGAAAAATATTGGGCATTTCATCATTATCGGGAAAAACGGGGTCAGAAGGAGCCTCTTAGAAAAAATCAAGAATTGGATCGATTGCTTAGGGAAGTATACCGTAGCTTGGATGATTTCCGTGCCAAAGAGAGGACTACAACGGCAATCACTACCATGAAAGAGAGGAGTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000932 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009266 GO:0009408 GO:0009628 GO:0009892 GO:0009987 GO:0010286 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0032991 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0050789 GO:0050896 GO:0060255 GO:0065007 GO:0071704 GO:0090304 GO:1901360 GO:1901361 GO:1901575 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

899

Amino Acids

101.33

Weight (kDa)

8.35

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
La	PF05383	292 - 346	4.1e-23	La domain
LARP1_HEAT	PF21071	726 - 873	3.1e-61	LARP1 HEAT repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21160 AT5G21160 AT5G21160
fragaria_vesca	FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710 FvH4_3g27710
malus_domestica	MD00G1106400.v1.1 MD11G1183000.v1.1
prunus_persica	Prupe.6G155800_v2.0.a1 Prupe.6G155800_v2.0.a1 Prupe.6G155800_v2.0.a1 Prupe.6G155800_v2.0.a1
pyrus_communis	pycom5153684g00350
rosa_chinensis	RchiOBHm_Chr5g0050001
rosa_laevigata	RLG00000034676
rosa_multiflora	Rmu_sc0000333.1_g000023
rosa_roxburghii	Rroxscaffold_1G00031150
rosa_rugosa	Rorug05G0256500
rosa_samantha	Rh5AG329600 Rh5BG340300 Rh5CG366300 Rh5DG352900
rosa_wichuraiana	Rw5G031120

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	878
AccB1I	GGYRCC	3 cut(s)	98, 961, 2244
AccB7I	CCANNNNNTGG	2 cut(s)	416, 689
AccI	GTMKAC	2 cut(s)	1352, 2622
AccIII	TCCGGA	1 cut(s)	2361
AciI	CCGC	4 cut(s)	69, 761, 2135, 2242
AclWI	GGATC	3 cut(s)	466, 1660, 2610
AcoI	YGGCCR	2 cut(s)	583, 1821
AcsI	RAATTY	6 cut(s)	1223, 1243, 1366, 1816, 1837, 2450
AcuI	CTGAAG	2 cut(s)	1422, 1899
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	5 cut(s)	318, 369, 929, 1009, 2225
AflIII	ACRYGT	1 cut(s)	2331
AgeI	ACCGGT	2 cut(s)	490, 1988
Alw21I	GWGCWC	2 cut(s)	27, 1698
Alw26I	GTCTC	4 cut(s)	458, 839, 1075, 1606
AlwI	GGATC	3 cut(s)	466, 1660, 2610
AlwNI	CAGNNNCTG	2 cut(s)	734, 1741
Ama87I	CYCGRG	1 cut(s)	1963
Aor13HI	TCCGGA	1 cut(s)	2361
ApeKI	GCWGC	4 cut(s)	205, 386, 2384, 2387
ApoI	RAATTY	6 cut(s)	1223, 1243, 1366, 1816, 1837, 2450
ArsI	GACNNNNNNTTYG	2 cut(s)	1358, 1390
AseI	ATTAAT	1 cut(s)	197
AsiGI	ACCGGT	2 cut(s)	490, 1988
AspA2I	CCTAGG	1 cut(s)	662
AsuC2I	CCSGG	3 cut(s)	192, 470, 842
AsuHPI	GGTGA	5 cut(s)	16, 1202, 1346, 1658, 2483
AsuII	TTCGAA	1 cut(s)	1345
AsuNHI	GCTAGC	1 cut(s)	2390
AvaI	CYCGRG	1 cut(s)	1963
AvaII	GGWCC	9 cut(s)	38, 153, 419, 659, 692, 731, 782, 1200, 2078
AvrII	CCTAGG	1 cut(s)	662
BalI	TGGCCA	2 cut(s)	585, 1823
BanI	GGYRCC	3 cut(s)	98, 961, 2244
BanII	GRGCYC	3 cut(s)	27, 829, 1698
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	3 cut(s)	62, 556, 2385
Bbv12I	GWGCWC	2 cut(s)	27, 1698
BbvI	GCAGC	4 cut(s)	217, 373, 2371, 2374
BccI	CCATC	7 cut(s)	339, 346, 937, 1187, 1243, 1270, 1295
BceAI	ACGGC	1 cut(s)	2682
BclI	TGATCA	1 cut(s)	1597
BcnI	CCSGG	3 cut(s)	192, 470, 842
BcoDI	GTCTC	4 cut(s)	458, 839, 1075, 1606
BfaI	CTAG	7 cut(s)	546, 663, 1511, 2003, 2195, 2391, 2408
BfmI	CTRYAG	2 cut(s)	1116, 2428
BglI	GCCNNNNNGGC	1 cut(s)	574
BglII	AGATCT	1 cut(s)	2084
BisI	GCNGC	5 cut(s)	69, 206, 387, 2385, 2388
BlnI	CCTAGG	1 cut(s)	662
BlsI	GCNGC	5 cut(s)	70, 207, 388, 2386, 2389
Bme18I	GGWCC	9 cut(s)	38, 153, 419, 659, 692, 731, 782, 1200, 2078
BmeT110I	CYCGRG	1 cut(s)	1963
BmiI	GGNNCC	9 cut(s)	40, 100, 421, 783, 828, 963, 1987, 2246, 2577
BmrI	ACTGGG	2 cut(s)	308, 1548
BmsI	GCATC	3 cut(s)	1171, 1786, 2185
BmtI	GCTAGC	1 cut(s)	2394
BmuI	ACTGGG	2 cut(s)	308, 1548
BoxI	GACNNNNGTC	1 cut(s)	62
BpiI	GAAGAC	3 cut(s)	62, 556, 2385
BplI	GAGNNNNNCTC	2 cut(s)	2089, 2121
BpmI	CTGGAG	3 cut(s)	684, 1762, 2513
Bpu10I	CCTNAGC	1 cut(s)	2612
Bpu14I	TTCGAA	1 cut(s)	1345
BpuEI	CTTGAG	3 cut(s)	694, 1538, 1789
BpuMI	CCSGG	3 cut(s)	192, 470, 842
Bsa29I	ATCGAT	1 cut(s)	2605
BsaBI	GATNNNNATC	2 cut(s)	909, 1548
BsaHI	GRCGYC	1 cut(s)	126
BsaI	GGTCTC	1 cut(s)	458
BsaWI	WCCGGW	5 cut(s)	61, 490, 853, 1988, 2361
Bse118I	RCCGGY	3 cut(s)	490, 1135, 1988
Bse1I	ACTGG	8 cut(s)	314, 755, 772, 965, 1185, 1554, 1779, 2138
Bse3DI	GCAATG	3 cut(s)	381, 423, 1396
Bse8I	GATNNNNATC	2 cut(s)	909, 1548
BseAI	TCCGGA	1 cut(s)	2361
BseCI	ATCGAT	1 cut(s)	2605
BseJI	GATNNNNATC	2 cut(s)	909, 1548
BseMI	GCAATG	3 cut(s)	381, 423, 1396
BseMII	CTCAG	5 cut(s)	453, 1416, 1422, 2049, 2136
BseNI	ACTGG	8 cut(s)	314, 755, 772, 965, 1185, 1554, 1779, 2138
BseRI	GAGGAG	3 cut(s)	168, 177, 1226
BseXI	GCAGC	4 cut(s)	217, 373, 2371, 2374
BseYI	CCCAGC	1 cut(s)	1039
BsgI	GTGCAG	1 cut(s)	1082
Bsh1285I	CGRYCG	2 cut(s)	66, 1993
BshNI	GGYRCC	3 cut(s)	98, 961, 2244
BshTI	ACCGGT	2 cut(s)	490, 1988
BshVI	ATCGAT	1 cut(s)	2605
BsiEI	CGRYCG	2 cut(s)	66, 1993
BsiHKAI	GWGCWC	2 cut(s)	27, 1698
BsiHKCI	CYCGRG	1 cut(s)	1963
BsiSI	CCGG	9 cut(s)	62, 191, 470, 491, 842, 854, 1136, 1989, 2362
BslFI	GGGAC	3 cut(s)	24, 722, 795
BsmAI	GTCTC	4 cut(s)	458, 839, 1075, 1606
BsmBI	CGTCTC	1 cut(s)	1075
BsmFI	GGGAC	3 cut(s)	24, 722, 795
BsmI	GAATGC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	458
BsoBI	CYCGRG	1 cut(s)	1963
Bsp119I	TTCGAA	1 cut(s)	1345
Bsp1286I	GDGCHC	3 cut(s)	27, 829, 1698
Bsp13I	TCCGGA	1 cut(s)	2361
Bsp1407I	TGTACA	1 cut(s)	1007
Bsp143I	GATC	7 cut(s)	458, 1543, 1597, 1652, 1754, 2084, 2602
Bsp19I	CCATGG	1 cut(s)	2110
BspACI	CCGC	4 cut(s)	69, 761, 2135, 2242
BspCNI	CTCAG	5 cut(s)	454, 1415, 1423, 2048, 2135
BspDI	ATCGAT	1 cut(s)	2605
BspEI	TCCGGA	1 cut(s)	2361
BspLI	GGNNCC	9 cut(s)	40, 100, 421, 783, 828, 963, 1987, 2246, 2577
BspOI	GCTAGC	1 cut(s)	2394
BspPI	GGATC	3 cut(s)	466, 1660, 2610
BspQI	GCTCTTC	1 cut(s)	1500
BspT104I	TTCGAA	1 cut(s)	1345
BspT107I	GGYRCC	3 cut(s)	98, 961, 2244
BspTNI	GGTCTC	1 cut(s)	458
BsrDI	GCAATG	3 cut(s)	381, 423, 1396
BsrFI	RCCGGY	3 cut(s)	490, 1135, 1988
BsrGI	TGTACA	1 cut(s)	1007
BsrI	ACTGG	8 cut(s)	314, 755, 772, 965, 1185, 1554, 1779, 2138
BssAI	RCCGGY	3 cut(s)	490, 1135, 1988
BssMI	GATC	7 cut(s)	458, 1543, 1597, 1652, 1754, 2084, 2602
BssNAI	GTATAC	1 cut(s)	2623
BssNI	GRCGYC	1 cut(s)	126
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	4 cut(s)	662, 952, 1422, 2110
Bst1107I	GTATAC	1 cut(s)	2623
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	5 cut(s)	1054, 1763, 1871, 1938, 2627
Bst6I	CTCTTC	2 cut(s)	1500, 1875
BstACI	GRCGYC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	1007
BstBI	TTCGAA	1 cut(s)	1345
BstC8I	GCNNGC	5 cut(s)	114, 277, 1698, 1801, 2392
BstDEI	CTNAG	8 cut(s)	462, 1402, 1431, 2035, 2122, 2324, 2582, 2612
BstDSI	CCRYGG	2 cut(s)	50, 2110
BstKTI	GATC	7 cut(s)	461, 1546, 1600, 1655, 1757, 2087, 2605
BstMAI	GTCTC	4 cut(s)	458, 839, 1075, 1606
BstMBI	GATC	7 cut(s)	458, 1543, 1597, 1652, 1754, 2084, 2602
BstMCI	CGRYCG	2 cut(s)	66, 1993
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 285, 574, 1407
BstNSI	RCATGY	1 cut(s)	2335
BstPAI	GACNNNNGTC	1 cut(s)	62
BstSFI	CTRYAG	2 cut(s)	1116, 2428
BstV1I	GCAGC	4 cut(s)	217, 373, 2371, 2374
BstV2I	GAAGAC	3 cut(s)	62, 556, 2385
BstX2I	RGATCY	3 cut(s)	458, 1652, 2084
BstYI	RGATCY	3 cut(s)	458, 1652, 2084
BstZ17I	GTATAC	1 cut(s)	2623
Bsu15I	ATCGAT	1 cut(s)	2605
BsuTUI	ATCGAT	1 cut(s)	2605
BtgI	CCRYGG	2 cut(s)	50, 2110
BtsI	GCAGTG	2 cut(s)	1034, 2287
BtsIMutI	CAGTG	6 cut(s)	1034, 1192, 1875, 1876, 2145, 2287
Cac8I	GCNNGC	5 cut(s)	114, 277, 1698, 1801, 2392
CaiI	CAGNNNCTG	2 cut(s)	734, 1741
Cfr10I	RCCGGY	3 cut(s)	490, 1135, 1988
ClaI	ATCGAT	1 cut(s)	2605
CseI	GACGC	2 cut(s)	134, 2390
Csp6I	GTAC	5 cut(s)	317, 368, 928, 1008, 2224
CspAI	ACCGGT	2 cut(s)	490, 1988
CviQI	GTAC	5 cut(s)	317, 368, 928, 1008, 2224
DdeI	CTNAG	8 cut(s)	462, 1402, 1431, 2035, 2122, 2324, 2582, 2612
DpnI	GATC	7 cut(s)	460, 1545, 1599, 1654, 1756, 2086, 2604
DpnII	GATC	7 cut(s)	458, 1543, 1597, 1652, 1754, 2084, 2602
DraI	TTTAAA	2 cut(s)	816, 988
EaeI	YGGCCR	2 cut(s)	583, 1821
Eam1104I	CTCTTC	2 cut(s)	1500, 1875
EarI	CTCTTC	2 cut(s)	1500, 1875
EciI	GGCGGA	2 cut(s)	750, 2124
Ecl136II	GAGCTC	2 cut(s)	25, 1696
Eco130I	CCWWGG	4 cut(s)	662, 952, 1422, 2110
Eco147I	AGGCCT	3 cut(s)	667, 679, 1719
Eco24I	GRGCYC	3 cut(s)	27, 829, 1698
Eco31I	GGTCTC	1 cut(s)	458
Eco47I	GGWCC	9 cut(s)	38, 153, 419, 659, 692, 731, 782, 1200, 2078
Eco53kI	GAGCTC	2 cut(s)	25, 1696
Eco57I	CTGAAG	2 cut(s)	1422, 1899
Eco88I	CYCGRG	1 cut(s)	1963
EcoICRI	GAGCTC	2 cut(s)	25, 1696
EcoO109I	RGGNCCY	3 cut(s)	278, 731, 782
EcoT14I	CCWWGG	4 cut(s)	662, 952, 1422, 2110
EcoT38I	GRGCYC	3 cut(s)	27, 829, 1698
ErhI	CCWWGG	4 cut(s)	662, 952, 1422, 2110
Esp3I	CGTCTC	1 cut(s)	1075
FalI	AAGNNNNNCTT	2 cut(s)	1189, 1221
FaqI	GGGAC	3 cut(s)	24, 722, 795
FbaI	TGATCA	1 cut(s)	1597
FblI	GTMKAC	2 cut(s)	1352, 2622
Fnu4HI	GCNGC	5 cut(s)	69, 206, 387, 2385, 2388
FriOI	GRGCYC	3 cut(s)	27, 829, 1698
Fsp4HI	GCNGC	5 cut(s)	69, 206, 387, 2385, 2388
FspBI	CTAG	7 cut(s)	546, 663, 1511, 2003, 2195, 2391, 2408
GluI	GCNGC	5 cut(s)	69, 206, 387, 2385, 2388
GsaI	CCCAGC	1 cut(s)	1043
GsuI	CTGGAG	3 cut(s)	684, 1762, 2513
HapII	CCGG	9 cut(s)	62, 191, 470, 491, 842, 854, 1136, 1989, 2362
HgaI	GACGC	2 cut(s)	134, 2390
Hin1I	GRCGYC	1 cut(s)	126
HincII	GTYRAC	1 cut(s)	1320
HindII	GTYRAC	1 cut(s)	1320
HpaII	CCGG	9 cut(s)	62, 191, 470, 491, 842, 854, 1136, 1989, 2362
HphI	GGTGA	5 cut(s)	16, 1202, 1346, 1658, 2483
Hpy166II	GTNNAC	5 cut(s)	1008, 1320, 1353, 2024, 2623
Hpy188I	TCNGA	7 cut(s)	463, 1405, 1441, 1995, 2017, 2423, 2571
Hpy8I	GTNNAC	5 cut(s)	1008, 1320, 1353, 2024, 2623
Hpy99I	CGWCG	1 cut(s)	1505
HpyAV	CCTTC	7 cut(s)	1191, 1446, 1554, 1643, 1709, 2440, 2566
HpyCH4III	ACNGT	5 cut(s)	1054, 1763, 1871, 1938, 2627
HpyCH4IV	ACGT	1 cut(s)	1846
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 285, 574, 1407
HpyF3I	CTNAG	8 cut(s)	462, 1402, 1431, 2035, 2122, 2324, 2582, 2612
HpySE526I	ACGT	1 cut(s)	1846
Hsp92I	GRCGYC	1 cut(s)	126
Kpn2I	TCCGGA	1 cut(s)	2361
Ksp22I	TGATCA	1 cut(s)	1597
Kzo9I	GATC	7 cut(s)	458, 1543, 1597, 1652, 1754, 2084, 2602
LguI	GCTCTTC	1 cut(s)	1500
LmnI	GCTCC	5 cut(s)	85, 703, 832, 2127, 2575
Lsp1109I	GCAGC	4 cut(s)	217, 373, 2371, 2374
LweI	GCATC	3 cut(s)	1171, 1786, 2185
MaeI	CTAG	7 cut(s)	546, 663, 1511, 2003, 2195, 2391, 2408
MaeII	ACGT	1 cut(s)	1846
MaeIII	GTNAC	7 cut(s)	258, 967, 1624, 1781, 1865, 2030, 2471
MalI	GATC	7 cut(s)	460, 1545, 1599, 1654, 1756, 2086, 2604
MboI	GATC	7 cut(s)	458, 1543, 1597, 1652, 1754, 2084, 2602
MflI	RGATCY	3 cut(s)	458, 1652, 2084
MhlI	GDGCHC	3 cut(s)	27, 829, 1698
MlsI	TGGCCA	2 cut(s)	585, 1823
MluNI	TGGCCA	2 cut(s)	585, 1823
MlyI	GAGTC	6 cut(s)	52, 113, 154, 1115, 1892, 2482
MmeI	TCCRAC	4 cut(s)	637, 1973, 2020, 2421
Mox20I	TGGCCA	2 cut(s)	585, 1823
MroI	TCCGGA	1 cut(s)	2361
MscI	TGGCCA	2 cut(s)	585, 1823
MseI	TTAA	6 cut(s)	197, 815, 987, 996, 1371, 1386
MslI	CAYNNNNRTG	3 cut(s)	641, 1493, 2678
Msp20I	TGGCCA	2 cut(s)	585, 1823
MspA1I	CMGCKG	1 cut(s)	2485
MspI	CCGG	9 cut(s)	62, 191, 470, 491, 842, 854, 1136, 1989, 2362
Mva1269I	GAATGC	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	77, 285, 574, 1407
NciI	CCSGG	3 cut(s)	192, 470, 842
NcoI	CCATGG	1 cut(s)	2110
NdeII	GATC	7 cut(s)	458, 1543, 1597, 1652, 1754, 2084, 2602
NheI	GCTAGC	1 cut(s)	2390
NlaIV	GGNNCC	9 cut(s)	40, 100, 421, 783, 828, 963, 1987, 2246, 2577
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	2 cut(s)	258, 2471
NspI	RCATGY	1 cut(s)	2335
NspV	TTCGAA	1 cut(s)	1345
PaeR7I	CTCGAG	1 cut(s)	1963
PceI	AGGCCT	3 cut(s)	667, 679, 1719
PciI	ACATGT	1 cut(s)	2331
PciSI	GCTCTTC	1 cut(s)	1500
PctI	GAATGC	1 cut(s)	250
PflMI	CCANNNNNTGG	2 cut(s)	416, 689
PfoI	TCCNGGA	2 cut(s)	190, 727
PinAI	ACCGGT	2 cut(s)	490, 1988
PkrI	GCNGC	5 cut(s)	70, 207, 388, 2386, 2389
PleI	GAGTC	6 cut(s)	52, 112, 154, 1115, 1891, 2482
PpsI	GAGTC	6 cut(s)	52, 112, 154, 1115, 1891, 2482
PpuMI	RGGWCCY	2 cut(s)	731, 782
PscI	ACATGT	1 cut(s)	2331
PshAI	GACNNNNGTC	1 cut(s)	62
PshBI	ATTAAT	1 cut(s)	197
PsiI	TTATAA	1 cut(s)	878
Psp124BI	GAGCTC	2 cut(s)	27, 1698
Psp5II	RGGWCCY	2 cut(s)	731, 782
PspFI	CCCAGC	1 cut(s)	1039
PspN4I	GGNNCC	9 cut(s)	40, 100, 421, 783, 828, 963, 1987, 2246, 2577
PspPPI	RGGWCCY	2 cut(s)	731, 782
PsrI	GAACNNNNNNTAC	2 cut(s)	2342, 2374
PstNI	CAGNNNCTG	2 cut(s)	734, 1741
PsuI	RGATCY	3 cut(s)	458, 1652, 2084
PvuII	CAGCTG	1 cut(s)	2485
RsaI	GTAC	5 cut(s)	318, 369, 929, 1009, 2225
RsaNI	GTAC	5 cut(s)	317, 368, 928, 1008, 2224
RseI	CAYNNNNRTG	3 cut(s)	641, 1493, 2678
SacI	GAGCTC	2 cut(s)	27, 1698
SapI	GCTCTTC	1 cut(s)	1500
SaqAI	TTAA	6 cut(s)	197, 815, 987, 996, 1371, 1386
SatI	GCNGC	5 cut(s)	69, 206, 387, 2385, 2388
Sau3AI	GATC	7 cut(s)	458, 1543, 1597, 1652, 1754, 2084, 2602
SchI	GAGTC	6 cut(s)	52, 113, 154, 1115, 1892, 2482
SduI	GDGCHC	3 cut(s)	27, 829, 1698
SfaNI	GCATC	3 cut(s)	1171, 1786, 2185
SfcI	CTRYAG	2 cut(s)	1116, 2428
Sfr274I	CTCGAG	1 cut(s)	1963
SfuI	TTCGAA	1 cut(s)	1345
SinI	GGWCC	9 cut(s)	38, 153, 419, 659, 692, 731, 782, 1200, 2078
SlaI	CTCGAG	1 cut(s)	1963
SmiMI	CAYNNNNRTG	3 cut(s)	641, 1493, 2678
SmlI	CTYRAG	4 cut(s)	673, 1517, 1804, 1963
SmoI	CTYRAG	4 cut(s)	673, 1517, 1804, 1963
SseBI	AGGCCT	3 cut(s)	667, 679, 1719
SsiI	CCGC	4 cut(s)	69, 761, 2135, 2242
SspI	AATATT	2 cut(s)	874, 2534
SspMI	CTAG	7 cut(s)	546, 663, 1511, 2003, 2195, 2391, 2408
SstI	GAGCTC	2 cut(s)	27, 1698
StuI	AGGCCT	3 cut(s)	667, 679, 1719
StyI	CCWWGG	4 cut(s)	662, 952, 1422, 2110
TaaI	ACNGT	5 cut(s)	1054, 1763, 1871, 1938, 2627
TaiI	ACGT	1 cut(s)	1849
TaqI	TCGA	4 cut(s)	1345, 1500, 1964, 2605
TatI	WGTACW	1 cut(s)	1007
TauI	GCSGC	1 cut(s)	71
Tru1I	TTAA	6 cut(s)	197, 815, 987, 996, 1371, 1386
Tru9I	TTAA	6 cut(s)	197, 815, 987, 996, 1371, 1386
TscAI	CASTG	6 cut(s)	1041, 1192, 1876, 1882, 2145, 2287
TseFI	GTSAC	2 cut(s)	258, 2471
TseI	GCWGC	4 cut(s)	205, 386, 2384, 2387
Tsp45I	GTSAC	2 cut(s)	258, 2471
TspGWI	ACGGA	2 cut(s)	1093, 2633
TspRI	CASTG	6 cut(s)	1041, 1192, 1876, 1882, 2145, 2287
Van91I	CCANNNNNTGG	2 cut(s)	416, 689
VpaK11BI	GGWCC	9 cut(s)	38, 153, 419, 659, 692, 731, 782, 1200, 2078
VspI	ATTAAT	1 cut(s)	197
XapI	RAATTY	6 cut(s)	1223, 1243, 1366, 1816, 1837, 2450
XbaI	TCTAGA	2 cut(s)	545, 2194
XceI	RCATGY	1 cut(s)	2335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	413
XhoI	CTCGAG	1 cut(s)	1963
XmaJI	CCTAGG	1 cut(s)	662
XmiI	GTMKAC	2 cut(s)	1352, 2622
XspI	CTAG	7 cut(s)	546, 663, 1511, 2003, 2195, 2391, 2408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.