Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013916

Physical Location & Seq

Genomic Coordinates Forward (+)

34799443 .. 34802086

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1157300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTATATCGCCGATATGGGTATTTGGGTATGGCTCTCTTATCTGGAAGGCTGGTTTTAACTACGATGAGCGCCTGGTCGGCTTCATCAAAGGCTATCGCCGTGTCTTCTACCAAGGCAGTACGGACCATAGAGGGACGCCTGAATATCCAGGAAGAACAGTCACATTGGAACCTGCAGAAGGAGAAGTCTGTTGGGGAGTTGCCTACAAGATCTCAAACAAGGAAGATCAAGAAGTTGCTATAACGTATTTAGAAGTGAGGGAGAAGCAGTATGACAAGAAGGCTTATCTTGATTTCTTCACCGATCCAATGGCGACAACTGCAGCTGTTTCAGGTGTAATGGTATACATCGCCTCTCCGGACAAGAAACATAATGTGAACTACTTGGGTCCTGCATCCACTGAAGAGATTTCCAAACAAATTGTTCAGGCTGAAGGCCCCTCGGGGCCTAATAGAGACTACCTTTTCCGCCTTGAAGAGGCACTTCTTCAACTAGGATGCAAGGACAGACATGTATTGGATCTTGCAAACGAAGTGAGGCGCATCCTGTCGGAGAGGGAGCTGACTTCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

193

Amino Acids

21.74

Weight (kDa)

5.49

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ChaC	PF04752	6 - 182	9.5e-55	ChaC-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0013916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44790
fragaria_vesca	FvH4_2g26710
malus_domestica	MD00G1157300.v1.1
prunus_persica	Prupe.1G500300_v2.0.a1
pyrus_communis	pycom12654g00130
rosa_chinensis	RchiOBHm_Chr6g0295581
rosa_laevigata	RLG00000011787
rosa_multiflora	Rmu_sc0005000.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172350
rosa_rugosa	Rorug06G0252200 Rorug06G0252300 Rorug06G0252400
rosa_samantha	Rh6AG365400 Rh6BG373600 Rh6CG379900 Rh6DG366500
rosa_wichuraiana	Rw6G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	348
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	1 cut(s)	472
AclWI	GGATC	2 cut(s)	302, 531
AcuI	CTGAAG	3 cut(s)	426, 456, 555
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	182, 481
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	2 cut(s)	479, 494
AjnI	CCWGG	2 cut(s)	75, 151
AluBI	AGCT	2 cut(s)	329, 565
AluI	AGCT	2 cut(s)	329, 565
Alw26I	GTCTC	1 cut(s)	453
AlwI	GGATC	2 cut(s)	302, 531
Ama87I	CYCGRG	1 cut(s)	445
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	2 cut(s)	439, 449
ApeKI	GCWGC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	75, 546
AspS9I	GGNCC	4 cut(s)	127, 392, 440, 449
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	2 cut(s)	127, 392
BbsI	GAAGAC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	87
BciT130I	CCWGG	2 cut(s)	77, 153
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	1 cut(s)	497
BfmI	CTRYAG	2 cut(s)	177, 324
BfoI	RGCGCY	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	184
BglI	GCCNNNNNGGC	1 cut(s)	81
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	77, 153
Bme18I	GGWCC	2 cut(s)	127, 392
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	4 cut(s)	127, 392, 440, 449
BmiI	GGNNCC	4 cut(s)	174, 393, 442, 450
BmrFI	CCNGG	2 cut(s)	77, 153
BmsI	GCATC	3 cut(s)	407, 491, 555
BpiI	GAAGAC	1 cut(s)	100
BsaHI	GRCGYC	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	115, 444
BsaWI	WCCGGW	1 cut(s)	361
BsaXI	ACNNNNNCTCC	2 cut(s)	257, 287
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 481
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	2 cut(s)	77, 153
BseDI	CCNNGG	2 cut(s)	115, 444
BseGI	GGATG	3 cut(s)	398, 506, 546
BseLI	CCNNNNNNNGG	2 cut(s)	182, 481
BseXI	GCAGC	1 cut(s)	338
BshFI	GGCC	2 cut(s)	441, 451
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	182, 481
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	2 cut(s)	441, 451
BsoBI	CYCGRG	1 cut(s)	445
Bsp13I	TCCGGA	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	213, 229, 307, 523
BspACI	CCGC	1 cut(s)	472
BspANI	GGCC	2 cut(s)	441, 451
BspEI	TCCGGA	1 cut(s)	361
BspLI	GGNNCC	4 cut(s)	174, 393, 442, 450
BspMAI	CTGCAG	2 cut(s)	181, 328
BspMI	ACCTGC	1 cut(s)	184
BspPI	GGATC	2 cut(s)	302, 531
BssECI	CCNNGG	2 cut(s)	115, 444
BssMI	GATC	4 cut(s)	213, 229, 307, 523
BssNAI	GTATAC	1 cut(s)	349
BssNI	GRCGYC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	115
Bst1107I	GTATAC	1 cut(s)	349
Bst2UI	CCWGG	2 cut(s)	77, 153
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	402, 474
BstACI	GRCGYC	1 cut(s)	140
BstENI	CCTNNNNNAGG	2 cut(s)	180, 479
BstF5I	GGATG	3 cut(s)	398, 506, 546
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	75, 546
BstKTI	GATC	4 cut(s)	216, 232, 310, 526
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	4 cut(s)	213, 229, 307, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 323
BstNI	CCWGG	2 cut(s)	77, 153
BstNSI	RCATGY	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	75, 151
BstSFI	CTRYAG	2 cut(s)	177, 324
BstV1I	GCAGC	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	100
BstX2I	RGATCY	2 cut(s)	213, 523
BstYI	RGATCY	2 cut(s)	213, 523
BstZ17I	GTATAC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	441, 451
BtgZI	GCGATG	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	398, 506, 546
BtsIMutI	CAGTG	1 cut(s)	402
BveI	ACCTGC	1 cut(s)	184
CfoI	GCGC	2 cut(s)	75, 546
Cfr13I	GGNCC	4 cut(s)	127, 392, 440, 449
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	2 cut(s)	515, 576
CviQI	GTAC	1 cut(s)	123
DpnI	GATC	4 cut(s)	215, 231, 309, 525
DpnII	GATC	4 cut(s)	213, 229, 307, 523
Eam1104I	CTCTTC	2 cut(s)	402, 474
EarI	CTCTTC	2 cut(s)	402, 474
EciI	GGCGGA	1 cut(s)	461
Eco130I	CCWWGG	1 cut(s)	115
Eco47I	GGWCC	2 cut(s)	127, 392
Eco57I	CTGAAG	3 cut(s)	426, 456, 555
Eco88I	CYCGRG	1 cut(s)	445
EcoNI	CCTNNNNNAGG	2 cut(s)	180, 479
EcoO109I	RGGNCCY	3 cut(s)	392, 440, 449
EcoRII	CCWGG	2 cut(s)	75, 151
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
FaeI	CATG	2 cut(s)	518, 579
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	2 cut(s)	514, 575
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	3 cut(s)	385, 513, 533
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	1 cut(s)	497
GlaI	GCGC	2 cut(s)	74, 545
GluI	GCNGC	1 cut(s)	327
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	2 cut(s)	441, 451
HapII	CCGG	1 cut(s)	362
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	75, 546
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	518, 579
Hin6I	GCGC	2 cut(s)	73, 544
HinP1I	GCGC	2 cut(s)	73, 544
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	1 cut(s)	295
Hpy166II	GTNNAC	2 cut(s)	349, 382
Hpy188I	TCNGA	1 cut(s)	556
Hpy188III	TCNNGA	4 cut(s)	46, 233, 293, 362
Hpy8I	GTNNAC	2 cut(s)	349, 382
HpyAV	CCTTC	4 cut(s)	43, 176, 277, 431
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	5 cut(s)	179, 326, 398, 504, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 323
HpySE526I	ACGT	1 cut(s)	248
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	518, 579
HspAI	GCGC	2 cut(s)	73, 544
Kpn2I	TCCGGA	1 cut(s)	361
Kzo9I	GATC	4 cut(s)	213, 229, 307, 523
LmnI	GCTCC	1 cut(s)	562
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	3 cut(s)	407, 491, 555
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	4 cut(s)	215, 231, 309, 525
MboI	GATC	4 cut(s)	213, 229, 307, 523
MboII	GAAGA	7 cut(s)	100, 168, 239, 292, 419, 482, 491
MflI	RGATCY	2 cut(s)	213, 523
MluCI	AATT	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	534
MnlI	CCTC	7 cut(s)	128, 255, 367, 454, 475, 534, 552
MroI	TCCGGA	1 cut(s)	361
MseI	TTAA	1 cut(s)	60
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	2 cut(s)	77, 153
MvaI	CCWGG	2 cut(s)	77, 153
MwoI	GCNNNNNNNGC	2 cut(s)	81, 323
NdeII	GATC	4 cut(s)	213, 229, 307, 523
NlaIII	CATG	2 cut(s)	518, 579
NlaIV	GGNNCC	4 cut(s)	174, 393, 442, 450
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	518
PciI	ACATGT	1 cut(s)	514
PfoI	TCCNGGA	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	328
PpuMI	RGGWCCY	1 cut(s)	392
PscI	ACATGT	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	75, 151
PspGI	CCWGG	2 cut(s)	75, 151
PspN4I	GGNNCC	4 cut(s)	174, 393, 442, 450
PspPI	GGNCC	4 cut(s)	127, 392, 440, 449
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	2 cut(s)	181, 328
PsuI	RGATCY	2 cut(s)	213, 523
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	4 cut(s)	213, 229, 307, 523
Sau96I	GGNCC	4 cut(s)	127, 392, 440, 449
ScrFI	CCNGG	2 cut(s)	77, 153
SetI	ASST	6 cut(s)	178, 251, 331, 340, 468, 567
SfaNI	GCATC	3 cut(s)	407, 491, 555
SfcI	CTRYAG	2 cut(s)	177, 324
SinI	GGWCC	2 cut(s)	127, 392
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	1 cut(s)	472
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	2 cut(s)	75, 151
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	251
TasI	AATT	1 cut(s)	423
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	409
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	76
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	1 cut(s)	409
VpaK11BI	GGWCC	2 cut(s)	127, 392
XagI	CCTNNNNNAGG	2 cut(s)	180, 479
XceI	RCATGY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.