Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0013916

Physical Location & Seq

Genomic Coordinates Reverse (-)

39821984 .. 39823107

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0252200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTTCATCAACCACAGCAAATTTATCTGTTTTGCCTTGATCCTCATGTTGGGGGCCTGGTCTTCAGAAGCCACTTCTCGCAGCCTGCAAGATGCATTAATGTATGGGAGATACGAGCAATGGATGACTCGTTACGGACGCGTATACACTGACACTGATGAGAAGGAGAAGCGCTTCAAGATATTCAAGGAAAATGTAGCATTTATAGAATCTTCCAATGACAAAGCAAACAAACCTTACAAACTAAGTGTCAATGGATTTGCAGACCTTACAAATAAAGAGTTCACAGCCTCAAGAAATCGATTTAAGGCTCATGAATGTTCCACAAAGACCACTTCTTTCAAATATGAAAATGCCACTGTGCCATCAACAATGGACTGGAGACAGAAAGGAGCTGTTACCCCAATCAAGGACCAAGGACAATGTGGTTGTTGTTGGGCGTTCTCAGCAGTGGCAGCCATGGAAGGAATTACTCAACTCACAACTGGTAAACTGATTTCTTTGTCCGAGCAAGAGCTGGTTGACTGTGATGTTAATGGTGAAGACCAAGGCTGTGAGGGTGGCCTCATGGATGATGCCTTTCAGTTCATCAATCAAAACCATGGACTAAGTACCGAGGCCAATTATCCCTACACAGGTGTTGATGGTACATGCAATGCTAAGAAGGAAGCAAACCATGCAGCCTCGATAACTGGCCACGAAGATGTGCCTGCAAACAGTGAAAGCGCCCTACTTAATGCTGTTGCTAATCAACCTATTTCTGTTGCCATTGACGCCAGCGGATCTGATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACATGCGGAACGAGCCTAGACCATGGTGTTACCGCTGTTGGTTATGGTGTCAGAGATGATGGGACTAAGTATTGGTTGGTGAAGAACTCATGGGGGGCAGAATGGGGCGAACAAGGGTACATAAGAATGCAAAGAGATGTTGATGCGCCGGAAGGCCTCTGTGGTATTGCTATGGAAGCCTCTTATCCCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

340

Amino Acids

37.34

Weight (kDa)

4.91

Isoelectric Point (pI)

18.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	4.2e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	122 - 339	3.8e-85	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44790
fragaria_vesca	FvH4_2g26710
malus_domestica	MD00G1157300.v1.1
prunus_persica	Prupe.1G500300_v2.0.a1
pyrus_communis	pycom12654g00130
rosa_chinensis	RchiOBHm_Chr6g0295581
rosa_laevigata	RLG00000011787
rosa_multiflora	Rmu_sc0005000.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172350
rosa_rugosa	Rorug06G0252200 Rorug06G0252300 Rorug06G0252400
rosa_samantha	Rh6AG365400 Rh6BG373600 Rh6CG379900 Rh6DG366500
rosa_wichuraiana	Rw6G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	144
AciI	CCGC	3 cut(s)	783, 831, 858
AclWI	GGATC	2 cut(s)	37, 793
AcoI	YGGCCR	1 cut(s)	697
AcsI	RAATTY	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	51
AcyI	GRCGYC	1 cut(s)	777
AfaI	GTAC	3 cut(s)	616, 652, 944
AfeI	AGCGCT	1 cut(s)	176
AfiI	CCNNNNNNNGG	3 cut(s)	52, 412, 638
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	4 cut(s)	181, 190, 346, 807
AjnI	CCWGG	1 cut(s)	59
AluBI	AGCT	2 cut(s)	398, 520
AluI	AGCT	2 cut(s)	398, 520
Alw26I	GTCTC	1 cut(s)	379
AlwI	GGATC	2 cut(s)	37, 793
Aor51HI	AGCGCT	1 cut(s)	176
AoxI	GGCC	5 cut(s)	57, 565, 621, 697, 979
ApeKI	GCWGC	3 cut(s)	84, 458, 683
ApoI	RAATTY	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AseI	ATTAAT	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	3 cut(s)	177, 731, 973
AspS9I	GGNCC	2 cut(s)	57, 415
AsuHPI	GGTGA	2 cut(s)	554, 916
AvaII	GGWCC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	699
BbsI	GAAGAC	2 cut(s)	57, 552
BbvI	GCAGC	3 cut(s)	96, 470, 695
BccI	CCATC	3 cut(s)	376, 641, 878
BciT130I	CCWGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	379
BfaI	CTAG	1 cut(s)	842
BfoI	RGCGCY	2 cut(s)	178, 732
BisI	GCNGC	3 cut(s)	85, 459, 684
BlsI	GCNGC	3 cut(s)	86, 460, 685
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	57, 415
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	3 cut(s)	85, 568, 958
BpiI	GAAGAC	2 cut(s)	57, 552
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	280
Bsa29I	ATCGAT	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	777
BsaJI	CCNNGG	6 cut(s)	418, 462, 550, 604, 618, 847
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 412, 638
Bse1I	ACTGG	3 cut(s)	386, 493, 700
Bse3DI	GCAATG	2 cut(s)	128, 664
BseBI	CCWGG	1 cut(s)	61
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	6 cut(s)	418, 462, 550, 604, 618, 847
BseGI	GGATG	2 cut(s)	132, 580
BseLI	CCNNNNNNNGG	3 cut(s)	52, 412, 638
BseMI	GCAATG	2 cut(s)	128, 664
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	3 cut(s)	386, 493, 700
BseXI	GCAGC	3 cut(s)	96, 470, 695
Bsh1236I	CGCG	1 cut(s)	144
BshFI	GGCC	5 cut(s)	59, 567, 623, 699, 981
BshVI	ATCGAT	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	974
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	3 cut(s)	52, 412, 638
BsmAI	GTCTC	1 cut(s)	379
BsmFI	GGGAC	1 cut(s)	901
BsmI	GAATGC	1 cut(s)	957
BsnI	GGCC	5 cut(s)	59, 567, 623, 699, 981
Bsp143I	GATC	2 cut(s)	42, 785
Bsp19I	CCATGG	3 cut(s)	462, 604, 847
BspACI	CCGC	3 cut(s)	783, 831, 858
BspANI	GGCC	5 cut(s)	59, 567, 623, 699, 981
BspCNI	CTCAG	1 cut(s)	461
BspDI	ATCGAT	1 cut(s)	304
BspFNI	CGCG	1 cut(s)	144
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	58
BspPI	GGATC	2 cut(s)	37, 793
BsrDI	GCAATG	2 cut(s)	128, 664
BsrI	ACTGG	3 cut(s)	386, 493, 700
BssECI	CCNNGG	6 cut(s)	418, 462, 550, 604, 618, 847
BssMI	GATC	2 cut(s)	42, 785
BssNAI	GTATAC	1 cut(s)	148
BssNI	GRCGYC	1 cut(s)	777
BssT1I	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
Bst1107I	GTATAC	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	61
Bst4CI	ACNGT	3 cut(s)	364, 530, 722
BstACI	GRCGYC	1 cut(s)	777
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	3 cut(s)	89, 714, 781
BstDEI	CTNAG	5 cut(s)	248, 448, 611, 663, 891
BstDSI	CCRYGG	3 cut(s)	462, 604, 847
BstF5I	GGATG	2 cut(s)	132, 580
BstFNI	CGCG	1 cut(s)	144
BstH2I	RGCGCY	2 cut(s)	178, 732
BstHHI	GCGC	3 cut(s)	177, 731, 973
BstKTI	GATC	2 cut(s)	45, 788
BstMAI	GTCTC	1 cut(s)	379
BstMBI	GATC	2 cut(s)	42, 785
BstMWI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 837, 1001
BstNI	CCWGG	1 cut(s)	61
BstNSI	RCATGY	2 cut(s)	657, 831
BstSCI	CCNGG	1 cut(s)	59
BstUI	CGCG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	96, 470, 695
BstV2I	GAAGAC	2 cut(s)	57, 552
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
BstZ17I	GTATAC	1 cut(s)	148
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	5 cut(s)	59, 567, 623, 699, 981
BsuTUI	ATCGAT	1 cut(s)	304
BtgI	CCRYGG	3 cut(s)	462, 604, 847
BtsCI	GGATG	2 cut(s)	132, 580
BtsI	GCAGTG	2 cut(s)	459, 1014
BtsIMutI	CAGTG	6 cut(s)	150, 156, 360, 459, 727, 1014
Cac8I	GCNNGC	3 cut(s)	89, 714, 781
CciI	TCATGA	1 cut(s)	316
CfoI	GCGC	3 cut(s)	177, 731, 973
Cfr13I	GGNCC	2 cut(s)	57, 415
ClaI	ATCGAT	1 cut(s)	304
CseI	GACGC	2 cut(s)	150, 785
Csp6I	GTAC	3 cut(s)	615, 651, 943
CviQI	GTAC	3 cut(s)	615, 651, 943
DdeI	CTNAG	5 cut(s)	248, 448, 611, 663, 891
DpnI	GATC	2 cut(s)	44, 787
DpnII	GATC	2 cut(s)	42, 785
EaeI	YGGCCR	1 cut(s)	697
Eco130I	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
Eco147I	AGGCCT	1 cut(s)	981
Eco47I	GGWCC	1 cut(s)	415
Eco47III	AGCGCT	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	57
EcoRII	CCWGG	1 cut(s)	59
EcoT14I	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
EcoT22I	ATGCAT	1 cut(s)	100
ErhI	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
FaqI	GGGAC	1 cut(s)	901
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	3 cut(s)	85, 459, 684
FokI	GGATG	2 cut(s)	139, 587
Fsp4HI	GCNGC	3 cut(s)	85, 459, 684
FspBI	CTAG	1 cut(s)	842
GlaI	GCGC	3 cut(s)	176, 730, 972
GluI	GCNGC	3 cut(s)	85, 459, 684
GsuI	CTGGAG	1 cut(s)	403
HaeII	RGCGCY	2 cut(s)	178, 732
HaeIII	GGCC	5 cut(s)	59, 567, 623, 699, 981
HapII	CCGG	1 cut(s)	974
HgaI	GACGC	2 cut(s)	150, 785
HhaI	GCGC	3 cut(s)	177, 731, 973
Hin1I	GRCGYC	1 cut(s)	777
Hin6I	GCGC	3 cut(s)	175, 729, 971
HinP1I	GCGC	3 cut(s)	175, 729, 971
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	130, 212
HpaII	CCGG	1 cut(s)	974
HphI	GGTGA	2 cut(s)	554, 916
Hpy166II	GTNNAC	4 cut(s)	148, 288, 494, 526
Hpy188I	TCNGA	4 cut(s)	70, 511, 790, 878
Hpy188III	TCNNGA	3 cut(s)	181, 297, 317
Hpy8I	GTNNAC	4 cut(s)	148, 288, 494, 526
HpyAV	CCTTC	4 cut(s)	160, 461, 661, 971
HpyCH4III	ACNGT	3 cut(s)	364, 530, 722
HpyCH4V	TGCA	8 cut(s)	91, 98, 266, 657, 683, 716, 955, 1019
HpyF10VI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 837, 1001
HpyF3I	CTNAG	5 cut(s)	248, 448, 611, 663, 891
Hsp92I	GRCGYC	1 cut(s)	777
HspAI	GCGC	3 cut(s)	175, 729, 971
Kzo9I	GATC	2 cut(s)	42, 785
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	3 cut(s)	96, 470, 695
LweI	GCATC	3 cut(s)	85, 568, 958
MaeI	CTAG	1 cut(s)	842
MaeIII	GTNAC	3 cut(s)	134, 400, 853
MalI	GATC	2 cut(s)	44, 787
MboI	GATC	2 cut(s)	42, 785
MboII	GAAGA	5 cut(s)	57, 207, 557, 716, 919
MflI	RGATCY	1 cut(s)	785
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	4 cut(s)	23, 471, 625, 797
MluI	ACGCGT	1 cut(s)	142
MluNI	TGGCCA	1 cut(s)	699
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	8 cut(s)	56, 304, 553, 578, 613, 697, 992, 1015
Mox20I	TGGCCA	1 cut(s)	699
Mph1103I	ATGCAT	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	699
MseI	TTAA	4 cut(s)	101, 309, 537, 738
MslI	CAYNNNNRTG	2 cut(s)	705, 950
Msp20I	TGGCCA	1 cut(s)	699
MspA1I	CMGCKG	2 cut(s)	783, 860
MspI	CCGG	1 cut(s)	974
MspR9I	CCNGG	1 cut(s)	61
Mva1269I	GAATGC	1 cut(s)	957
MvaI	CCWGG	1 cut(s)	61
MvnI	CGCG	1 cut(s)	144
MwoI	GCNNNNNNNGC	6 cut(s)	449, 458, 680, 776, 837, 1001
NcoI	CCATGG	3 cut(s)	462, 604, 847
NdeII	GATC	2 cut(s)	42, 785
NlaIV	GGNNCC	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	2 cut(s)	657, 831
PagI	TCATGA	1 cut(s)	316
PceI	AGGCCT	1 cut(s)	981
PctI	GAATGC	1 cut(s)	957
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	86, 460, 685
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	57, 415
PsuI	RGATCY	1 cut(s)	785
RsaI	GTAC	3 cut(s)	616, 652, 944
RsaNI	GTAC	3 cut(s)	615, 651, 943
RseI	CAYNNNNRTG	2 cut(s)	705, 950
SaqAI	TTAA	4 cut(s)	101, 309, 537, 738
SatI	GCNGC	3 cut(s)	85, 459, 684
Sau3AI	GATC	2 cut(s)	42, 785
Sau96I	GGNCC	2 cut(s)	57, 415
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	61
SetI	ASST	6 cut(s)	241, 273, 400, 522, 643, 760
SfaNI	GCATC	3 cut(s)	85, 568, 958
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	705, 950
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	4 cut(s)	23, 471, 625, 797
SseBI	AGGCCT	1 cut(s)	981
SsiI	CCGC	3 cut(s)	783, 831, 858
SspMI	CTAG	1 cut(s)	842
StuI	AGGCCT	1 cut(s)	981
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	5 cut(s)	418, 462, 550, 604, 847
TaaI	ACNGT	3 cut(s)	364, 530, 722
TaqI	TCGA	2 cut(s)	304, 689
TasI	AATT	4 cut(s)	23, 471, 625, 797
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	4 cut(s)	101, 309, 537, 738
Tru9I	TTAA	4 cut(s)	101, 309, 537, 738
TscAI	CASTG	6 cut(s)	157, 163, 367, 459, 727, 1021
TseI	GCWGC	3 cut(s)	84, 458, 683
TspDTI	ATGAA	3 cut(s)	333, 366, 580
TspGWI	ACGGA	1 cut(s)	153
TspRI	CASTG	6 cut(s)	157, 163, 367, 459, 727, 1021
VpaK11BI	GGWCC	1 cut(s)	415
VspI	ATTAAT	1 cut(s)	101
XapI	RAATTY	1 cut(s)	23
XceI	RCATGY	2 cut(s)	657, 831
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	842
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.