Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013916

Physical Location & Seq

Genomic Coordinates Reverse (-)

41412111 .. 41416778

Gene Structure 4668 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G500300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGCAGGCGCTGATAACCAGGTCTCTCTTTATTCCTACTCCACTGTGTCCTCCAATCGCATCAGCTTTATTTACCCAAAAAAACAGAACAAAAACAAAAACGCATCAGCTTTTCTCTAGAGAAGAGAAGACCCAACTCACTGTGGCCCACTCCGGTTGTGGAGGAAGTGAAGAGTTGAGAAAGAAATTGGATTGGAAAAGCTCAAAAATGATGTGGGTATTTGGGTATGGCTCTCTTATCTGGAAGGCTGGTTTTAACTACGATGAGCGCCTCGTCGGCTTCATCAAAGGCTATCGCCGTGTCTTCTACCAAGGCAGTACGGACCACAGAGGGACGCCTGAGTATCCAGGAAGAACAGTGACATTGGAACCTGCAGAGGGAGAAGTTTGTTGGGGAGTTGCCTACAGGATCTCAAATAAGGAAGATCAAGAAGTTGCTTTAACGTATTTAGAAGTGAGGGAGAAGCAGTATGACAAGAAGGCTTATCTTGATTTCTTCACCGAGCCAAATGCTACAACTCCAGCTGTTTCAGATGTAATGGTATACATTGCCTCTCCAGACAAGAAACATAATGTGAACTATTTGGGCCCTGCATCCATTGAAGAGATTGCCAAACAAATTATTCAAGCTGAAGGCCCCTCAGGGCCTAATAGAGACTACCTGTTCCAACTTGAAGAGGCCCTTCTTCAATTTGGATGCAAAGACGCTCATGTAATGGATCTTGCAAGCGAAGTGAGGCGCATCCTTTCAGAGAGGGAGCTGACTTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

259

Amino Acids

29.28

Weight (kDa)

6.97

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44790
fragaria_vesca	FvH4_2g26710
malus_domestica	MD00G1157300.v1.1
prunus_persica	Prupe.1G500300_v2.0.a1
pyrus_communis	pycom12654g00130
rosa_chinensis	RchiOBHm_Chr6g0295581
rosa_laevigata	RLG00000011787
rosa_multiflora	Rmu_sc0005000.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172350
rosa_rugosa	Rorug06G0252200 Rorug06G0252300 Rorug06G0252400
rosa_samantha	Rh6AG365400 Rh6BG373600 Rh6CG379900 Rh6DG366500
rosa_wichuraiana	Rw6G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	546
AclWI	GGATC	2 cut(s)	419, 729
AcuI	CTGAAG	1 cut(s)	654
AcyI	GRCGYC	1 cut(s)	338
AfaI	GTAC	1 cut(s)	322
AfiI	CCNNNNNNNGG	1 cut(s)	380
AgsI	TTSAA	5 cut(s)	605, 629, 677, 692, 771
AjnI	CCWGG	2 cut(s)	20, 349
AluBI	AGCT	6 cut(s)	68, 112, 204, 527, 632, 763
AluI	AGCT	6 cut(s)	68, 112, 204, 527, 632, 763
Alw26I	GTCTC	2 cut(s)	30, 651
AlwI	GGATC	2 cut(s)	419, 729
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	5 cut(s)	147, 589, 637, 647, 681
ApaI	GGGCCC	1 cut(s)	593
AspLEI	GCGC	4 cut(s)	7, 13, 273, 744
AspS9I	GGNCC	7 cut(s)	148, 325, 589, 590, 638, 647, 682
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	325
AxyI	CCTNAGG	1 cut(s)	643
BaeGI	GKGCMC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	593
BbsI	GAAGAC	2 cut(s)	137, 298
BceAI	ACGGC	1 cut(s)	285
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	2 cut(s)	22, 351
BciVI	GTATCC	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	30, 651
BfaI	CTAG	1 cut(s)	120
BfmI	CTRYAG	2 cut(s)	375, 406
BfoI	RGCGCY	2 cut(s)	14, 274
BfuAI	ACCTGC	1 cut(s)	382
BfuI	GTATCC	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	279
Bme1390I	CCNGG	2 cut(s)	22, 351
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	7 cut(s)	148, 325, 589, 590, 638, 647, 682
BmiI	GGNNCC	3 cut(s)	372, 591, 640
BmrFI	CCNGG	2 cut(s)	22, 351
BmsI	GCATC	5 cut(s)	71, 115, 605, 689, 753
BpiI	GAAGAC	2 cut(s)	137, 298
BpmI	CTGGAG	2 cut(s)	507, 543
BsaHI	GRCGYC	1 cut(s)	338
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	1 cut(s)	313
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	455, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse21I	CCTNAGG	1 cut(s)	643
Bse3DI	GCAATG	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	22, 351
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	3 cut(s)	596, 704, 744
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	549
BseMII	CTCAG	2 cut(s)	333, 657
BseSI	GKGCMC	1 cut(s)	593
BshFI	GGCC	5 cut(s)	149, 591, 639, 649, 683
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	349
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	2 cut(s)	30, 651
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	5 cut(s)	149, 591, 639, 649, 683
Bso31I	GGTCTC	1 cut(s)	30
Bsp120I	GGGCCC	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	3 cut(s)	411, 427, 721
BspANI	GGCC	5 cut(s)	149, 591, 639, 649, 683
BspCNI	CTCAG	2 cut(s)	334, 656
BspLI	GGNNCC	3 cut(s)	372, 591, 640
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	382
BspPI	GGATC	2 cut(s)	419, 729
BspTNI	GGTCTC	1 cut(s)	30
BsrDI	GCAATG	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	3 cut(s)	411, 427, 721
BssNAI	GTATAC	1 cut(s)	547
BssNI	GRCGYC	1 cut(s)	338
BssT1I	CCWWGG	1 cut(s)	313
Bst1107I	GTATAC	1 cut(s)	547
Bst2UI	CCWGG	2 cut(s)	22, 351
Bst4CI	ACNGT	3 cut(s)	48, 145, 361
Bst6I	CTCTTC	4 cut(s)	120, 168, 600, 672
BstACI	GRCGYC	1 cut(s)	338
BstC8I	GCNNGC	2 cut(s)	9, 730
BstDEI	CTNAG	2 cut(s)	342, 643
BstF5I	GGATG	3 cut(s)	596, 704, 744
BstH2I	RGCGCY	2 cut(s)	14, 274
BstHHI	GCGC	4 cut(s)	7, 13, 273, 744
BstKTI	GATC	3 cut(s)	414, 430, 724
BstMAI	GTCTC	2 cut(s)	30, 651
BstMBI	GATC	3 cut(s)	411, 427, 721
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstNI	CCWGG	2 cut(s)	22, 351
BstSCI	CCNGG	2 cut(s)	20, 349
BstSFI	CTRYAG	2 cut(s)	375, 406
BstSLI	GKGCMC	1 cut(s)	593
BstV2I	GAAGAC	2 cut(s)	137, 298
BstX2I	RGATCY	2 cut(s)	411, 721
BstYI	RGATCY	2 cut(s)	411, 721
BstZ17I	GTATAC	1 cut(s)	547
Bsu36I	CCTNAGG	1 cut(s)	643
BsuI	GTATCC	1 cut(s)	357
BsuRI	GGCC	5 cut(s)	149, 591, 639, 649, 683
BtsCI	GGATG	3 cut(s)	596, 704, 744
BtsIMutI	CAGTG	3 cut(s)	44, 141, 366
BveI	ACCTGC	1 cut(s)	382
Cac8I	GCNNGC	2 cut(s)	9, 730
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	4 cut(s)	7, 13, 273, 744
Cfr13I	GGNCC	7 cut(s)	148, 325, 589, 590, 638, 647, 682
CseI	GACGC	2 cut(s)	346, 716
CsiI	ACCWGGT	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	321
CspCI	CAANNNNNGTGG	2 cut(s)	140, 175
CviAII	CATG	2 cut(s)	713, 774
CviQI	GTAC	1 cut(s)	321
DdeI	CTNAG	2 cut(s)	342, 643
DpnI	GATC	3 cut(s)	413, 429, 723
DpnII	GATC	3 cut(s)	411, 427, 721
Eam1104I	CTCTTC	4 cut(s)	120, 168, 600, 672
EarI	CTCTTC	4 cut(s)	120, 168, 600, 672
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	654
Eco81I	CCTNAGG	1 cut(s)	643
EcoO109I	RGGNCCY	4 cut(s)	590, 638, 647, 682
EcoRII	CCWGG	2 cut(s)	20, 349
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	2 cut(s)	716, 777
FaiI	YATR	6 cut(s)	231, 474, 547, 573, 714, 775
FalI	AAGNNNNNCTT	2 cut(s)	669, 701
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	2 cut(s)	712, 773
FblI	GTMKAC	1 cut(s)	546
FokI	GGATG	3 cut(s)	583, 711, 731
FriOI	GRGCYC	1 cut(s)	593
FspBI	CTAG	1 cut(s)	120
GlaI	GCGC	4 cut(s)	6, 12, 272, 743
GsuI	CTGGAG	2 cut(s)	507, 543
HaeII	RGCGCY	2 cut(s)	14, 274
HaeIII	GGCC	5 cut(s)	149, 591, 639, 649, 683
HapII	CCGG	1 cut(s)	156
HgaI	GACGC	2 cut(s)	346, 716
HhaI	GCGC	4 cut(s)	7, 13, 273, 744
Hin1I	GRCGYC	1 cut(s)	338
Hin1II	CATG	2 cut(s)	716, 777
Hin6I	GCGC	4 cut(s)	5, 11, 271, 742
HinP1I	GCGC	4 cut(s)	5, 11, 271, 742
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	547, 580
Hpy188I	TCNGA	2 cut(s)	535, 754
Hpy188III	TCNNGA	5 cut(s)	120, 244, 431, 491, 560
Hpy8I	GTNNAC	2 cut(s)	547, 580
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	4 cut(s)	241, 475, 629, 695
HpyCH4III	ACNGT	3 cut(s)	48, 145, 361
HpyCH4IV	ACGT	1 cut(s)	446
HpyCH4V	TGCA	4 cut(s)	377, 596, 702, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	2 cut(s)	342, 643
HpySE526I	ACGT	1 cut(s)	446
Hsp92I	GRCGYC	1 cut(s)	338
Hsp92II	CATG	2 cut(s)	716, 777
HspAI	GCGC	4 cut(s)	5, 11, 271, 742
Kzo9I	GATC	3 cut(s)	411, 427, 721
LmnI	GCTCC	1 cut(s)	760
LweI	GCATC	5 cut(s)	71, 115, 605, 689, 753
MabI	ACCWGGT	1 cut(s)	20
MaeI	CTAG	1 cut(s)	120
MaeII	ACGT	1 cut(s)	446
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	413, 429, 723
MboI	GATC	3 cut(s)	411, 427, 721
MflI	RGATCY	2 cut(s)	411, 721
MhlI	GDGCHC	1 cut(s)	593
MluCI	AATT	3 cut(s)	188, 621, 692
MmeI	TCCRAC	1 cut(s)	694
MseI	TTAA	2 cut(s)	258, 443
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	1 cut(s)	156
MspR9I	CCNGG	2 cut(s)	22, 351
MvaI	CCWGG	2 cut(s)	22, 351
MwoI	GCNNNNNNNGC	1 cut(s)	279
NdeII	GATC	3 cut(s)	411, 427, 721
NlaIII	CATG	2 cut(s)	716, 777
NlaIV	GGNNCC	3 cut(s)	372, 591, 640
NmuCI	GTSAC	1 cut(s)	361
PfoI	TCCNGGA	1 cut(s)	349
Psp6I	CCWGG	2 cut(s)	20, 349
PspGI	CCWGG	2 cut(s)	20, 349
PspN4I	GGNNCC	3 cut(s)	372, 591, 640
PspOMI	GGGCCC	1 cut(s)	589
PspPI	GGNCC	7 cut(s)	148, 325, 589, 590, 638, 647, 682
PstI	CTGCAG	1 cut(s)	379
PstNI	CAGNNNCTG	1 cut(s)	13
PsuI	RGATCY	2 cut(s)	411, 721
PvuII	CAGCTG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	322
RsaNI	GTAC	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	258, 443
Sau3AI	GATC	3 cut(s)	411, 427, 721
Sau96I	GGNCC	7 cut(s)	148, 325, 589, 590, 638, 647, 682
ScrFI	CCNGG	2 cut(s)	22, 351
SduI	GDGCHC	1 cut(s)	593
SexAI	ACCWGGT	1 cut(s)	20
SfaNI	GCATC	5 cut(s)	71, 115, 605, 689, 753
SfcI	CTRYAG	2 cut(s)	375, 406
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	3 cut(s)	188, 621, 692
SspMI	CTAG	1 cut(s)	120
StyD4I	CCNGG	2 cut(s)	20, 349
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	48, 145, 361
TaiI	ACGT	1 cut(s)	449
TasI	AATT	3 cut(s)	188, 621, 692
Tru1I	TTAA	2 cut(s)	258, 443
Tru9I	TTAA	2 cut(s)	258, 443
TscAI	CASTG	3 cut(s)	51, 148, 366
TseFI	GTSAC	1 cut(s)	361
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	1 cut(s)	274
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	3 cut(s)	51, 148, 366
VpaK11BI	GGWCC	1 cut(s)	325
XbaI	TCTAGA	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	158
XmiI	GTMKAC	1 cut(s)	546
XspI	CTAG	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.