Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0013916

Physical Location & Seq

Genomic Coordinates Reverse (-)

12594002 .. 12596577

Gene Structure 2576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00172350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCTACGACTCCAGCTCTTTCAGGAGTAATGGTATACATTGCCTCTCCAGATAAAAAGCTTAATGTGAACTATTTGGGTCCTGCATCCATTGAAGATATTGCCAAACAGATTGTTCAGGCGAAAGGTCCCTCAGGACGTAATAGAGAGTATCTTTTTAAACTTGAAGAGGCCCTTCTTCAATTTGAATGCAAAGACAAACATGTATCGGATCTTGCAAACGAAGTGAGGCGGATCATTTCAGAGGGGAGCTCACTGCTTCATGAGGCCGGGAACAAATGGGAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

96

Amino Acids

10.69

Weight (kDa)

6.73

Isoelectric Point (pI)

45.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ChaC	PF04752	9 - 78	2.8e-15	ChaC-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44790
fragaria_vesca	FvH4_2g26710
malus_domestica	MD00G1157300.v1.1
prunus_persica	Prupe.1G500300_v2.0.a1
pyrus_communis	pycom12654g00130
rosa_chinensis	RchiOBHm_Chr6g0295581
rosa_laevigata	RLG00000011787
rosa_multiflora	Rmu_sc0005000.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172350
rosa_rugosa	Rorug06G0252200 Rorug06G0252300 Rorug06G0252400
rosa_samantha	Rh6AG365400 Rh6BG373600 Rh6CG379900 Rh6DG366500
rosa_wichuraiana	Rw6G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	2 cut(s)	219, 242
AflIII	ACRYGT	1 cut(s)	202
AgsI	TTSAA	4 cut(s)	95, 167, 182, 188
AluBI	AGCT	3 cut(s)	17, 61, 252
AluI	AGCT	3 cut(s)	17, 61, 252
Alw21I	GWGCWC	1 cut(s)	254
AlwI	GGATC	2 cut(s)	219, 242
AoxI	GGCC	2 cut(s)	171, 267
AspS9I	GGNCC	3 cut(s)	80, 128, 172
AsuC2I	CCSGG	1 cut(s)	271
AvaII	GGWCC	2 cut(s)	80, 128
AxyI	CCTNAGG	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	2 cut(s)	80, 128
BmgT120I	GGNCC	3 cut(s)	80, 128, 172
BmiI	GGNNCC	2 cut(s)	81, 130
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	95
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpmI	CTGGAG	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	271
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bse21I	CCTNAGG	1 cut(s)	133
Bse3DI	GCAATG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	173, 269
BsiHKAI	GWGCWC	1 cut(s)	254
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	114
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	173, 269
Bsp1286I	GDGCHC	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	211, 234
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	2 cut(s)	173, 269
BspCNI	CTCAG	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	81, 130
BspPI	GGATC	2 cut(s)	219, 242
BsrDI	GCAATG	1 cut(s)	39
BssMI	GATC	2 cut(s)	211, 234
BssNAI	GTATAC	1 cut(s)	37
Bst1107I	GTATAC	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	162
BstDEI	CTNAG	1 cut(s)	133
BstF5I	GGATG	1 cut(s)	86
BstKTI	GATC	2 cut(s)	214, 237
BstMBI	GATC	2 cut(s)	211, 234
BstNSI	RCATGY	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	269
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BstZ17I	GTATAC	1 cut(s)	37
Bsu36I	CCTNAGG	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	173, 269
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	254
BtsIMutI	CAGTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	3 cut(s)	80, 128, 172
CviAII	CATG	2 cut(s)	203, 263
CviJI	RGCY	6 cut(s)	5, 17, 61, 173, 252, 269
CviKI_1	RGCY	6 cut(s)	5, 17, 61, 173, 252, 269
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	2 cut(s)	213, 236
DpnII	GATC	2 cut(s)	211, 234
DraI	TTTAAA	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
EciI	GGCGGA	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	252
Eco24I	GRGCYC	1 cut(s)	254
Eco47I	GGWCC	2 cut(s)	80, 128
Eco53kI	GAGCTC	1 cut(s)	252
Eco81I	CCTNAGG	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	252
EcoO109I	RGGNCCY	3 cut(s)	80, 128, 172
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	2 cut(s)	206, 266
FaiI	YATR	3 cut(s)	37, 204, 264
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	114
FatI	CATG	2 cut(s)	202, 262
FblI	GTMKAC	1 cut(s)	36
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	1 cut(s)	254
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	173, 269
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	2 cut(s)	206, 266
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	270
Hpy166II	GTNNAC	2 cut(s)	37, 70
Hpy188I	TCNGA	2 cut(s)	211, 244
Hpy188III	TCNNGA	4 cut(s)	24, 50, 135, 263
Hpy8I	GTNNAC	2 cut(s)	37, 70
HpyAV	CCTTC	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	86, 192, 218
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	206, 266
Kzo9I	GATC	2 cut(s)	211, 234
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	7 cut(s)	9, 27, 63, 96, 104, 120, 283
LweI	GCATC	1 cut(s)	95
MaeII	ACGT	1 cut(s)	139
MalI	GATC	2 cut(s)	213, 236
MboI	GATC	2 cut(s)	211, 234
MboII	GAAGA	3 cut(s)	107, 170, 179
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	254
MluCI	AATT	1 cut(s)	182
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	6 cut(s)	55, 142, 163, 222, 238, 259
MseI	TTAA	2 cut(s)	63, 159
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	211, 234
NlaIII	CATG	2 cut(s)	206, 266
NlaIV	GGNNCC	2 cut(s)	81, 130
NspI	RCATGY	1 cut(s)	206
PagI	TCATGA	1 cut(s)	262
PciI	ACATGT	1 cut(s)	202
PctI	GAATGC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
PpuMI	RGGWCCY	2 cut(s)	80, 128
PscI	ACATGT	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	254
Psp5II	RGGWCCY	2 cut(s)	80, 128
PspN4I	GGNNCC	2 cut(s)	81, 130
PspPI	GGNCC	3 cut(s)	80, 128, 172
PspPPI	RGGWCCY	2 cut(s)	80, 128
PsuI	RGATCY	1 cut(s)	211
SacI	GAGCTC	1 cut(s)	254
SaqAI	TTAA	2 cut(s)	63, 159
Sau3AI	GATC	2 cut(s)	211, 234
Sau96I	GGNCC	3 cut(s)	80, 128, 172
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	1 cut(s)	254
SetI	ASST	5 cut(s)	19, 63, 130, 142, 254
SfaNI	GCATC	1 cut(s)	95
SinI	GGWCC	2 cut(s)	80, 128
Sse9I	AATT	1 cut(s)	182
SsiI	CCGC	1 cut(s)	232
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	269
TaiI	ACGT	1 cut(s)	142
TasI	AATT	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	63, 159
Tru9I	TTAA	2 cut(s)	63, 159
TscAI	CASTG	1 cut(s)	261
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	2 cut(s)	80, 128
XceI	RCATGY	1 cut(s)	206
XmiI	GTMKAC	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.