Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005000.1

Orthogroup ID

OG0013916

Physical Location & Seq

Genomic Coordinates Reverse (-)

30951 .. 33208

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005000.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atggtcatctgggtatttggttatggttctttgatatggaaagccggctttaacttcgatgaacgcgtcgtcggattcatcaaagactatcgccgtgtcttctaccaaggcagtactgaccacagagggactcctgagtttccaggaagaacagtcacattggaacctgcagagggggaagtctgttggggagctgcctacaagatctcaaagaaggaagatcaagaaattgctttagaggtggactcttatcttaagcacttagaagtgagggagaagcagtatgacaagaaggcttatcttcatttctttactgagccgacagctacgactccagctctttcaggagtaatggtatatattgcctctccagataaaaagcttaatgtgaactacttgggtcctgcatccattgaagatattgccaaacagattgttcaggcaaaaggtccctcaggacctaatagagagtatctttttaaacttgaagaggcccttcttcaatttgaatgcaaagacaaacatgtatcggatcttgcaaacgaagtgaggcggatcatttcagagagggagctcactgcttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003839 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006518 GO:0006575 GO:0006749 GO:0006751 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016829 GO:0016840 GO:0016842 GO:0034641 GO:0042219 GO:0043171 GO:0043603 GO:0044237 GO:0044248 GO:0044273 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051187 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ChaC

Protein Analysis

195

Amino Acids

22.23

Weight (kDa)

5.88

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G44790
fragaria_vesca	FvH4_2g26710
malus_domestica	MD00G1157300.v1.1
prunus_persica	Prupe.1G500300_v2.0.a1
pyrus_communis	pycom12654g00130
rosa_chinensis	RchiOBHm_Chr6g0295581
rosa_laevigata	RLG00000011787
rosa_multiflora	Rmu_sc0005000.1_g000008
rosa_roxburghii	Rroxscaffold_7G00172350
rosa_rugosa	Rorug06G0252200 Rorug06G0252300 Rorug06G0252400
rosa_samantha	Rh6AG365400 Rh6BG373600 Rh6CG379900 Rh6DG366500
rosa_wichuraiana	Rw6G031900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AccII	CGCG	1 cut(s)	66
AciI	CCGC	1 cut(s)	553
AclWI	GGATC	2 cut(s)	540, 563
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	173
AflII	CTTAAG	1 cut(s)	254
AflIII	ACRYGT	2 cut(s)	64, 523
AgsI	TTSAA	4 cut(s)	416, 488, 503, 509
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	5 cut(s)	194, 326, 338, 382, 574
AluI	AGCT	5 cut(s)	194, 326, 338, 382, 574
Alw21I	GWGCWC	1 cut(s)	576
AlwI	GGATC	2 cut(s)	540, 563
AoxI	GGCC	1 cut(s)	492
ApeKI	GCWGC	1 cut(s)	194
AspS9I	GGNCC	4 cut(s)	401, 449, 458, 493
AvaII	GGWCC	3 cut(s)	401, 449, 458
AxyI	CCTNAGG	1 cut(s)	454
BanII	GRGCYC	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	576
BbvI	GCAGC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	78
BciT130I	CCWGG	1 cut(s)	144
BfmI	CTRYAG	1 cut(s)	168
BfrI	CTTAAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	3 cut(s)	401, 449, 458
BmgT120I	GGNCC	4 cut(s)	401, 449, 458, 493
BmiI	GGNNCC	3 cut(s)	165, 402, 451
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	416
BpiI	GAAGAC	1 cut(s)	91
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BpmI	CTGGAG	2 cut(s)	318, 354
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	4 cut(s)	266, 296, 339, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	44
Bse21I	CCTNAGG	1 cut(s)	454
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	407
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	3 cut(s)	126, 306, 468
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	576
BsiSI	CCGG	1 cut(s)	45
BslFI	GGGAC	2 cut(s)	142, 435
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	2 cut(s)	142, 435
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	1 cut(s)	494
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	204, 220, 532, 555
BspACI	CCGC	1 cut(s)	553
BspANI	GGCC	1 cut(s)	494
BspCNI	CTCAG	3 cut(s)	127, 307, 467
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	1 cut(s)	584
BspLI	GGNNCC	3 cut(s)	165, 402, 451
BspMAI	CTGCAG	1 cut(s)	172
BspMI	ACCTGC	1 cut(s)	175
BspPI	GGATC	2 cut(s)	540, 563
BspTI	CTTAAG	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	4 cut(s)	204, 220, 532, 555
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	483
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	4 cut(s)	135, 262, 315, 454
BstF5I	GGATG	1 cut(s)	407
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	207, 223, 535, 558
BstMBI	GATC	4 cut(s)	204, 220, 532, 555
BstNI	CCWGG	1 cut(s)	144
BstNSI	RCATGY	1 cut(s)	527
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	2 cut(s)	204, 532
BstYI	RGATCY	2 cut(s)	204, 532
Bsu36I	CCTNAGG	1 cut(s)	454
BsuRI	GGCC	1 cut(s)	494
BtsCI	GGATG	1 cut(s)	407
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	46
CciI	TCATGA	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	4 cut(s)	401, 449, 458, 493
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	2 cut(s)	524, 585
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	4 cut(s)	135, 262, 315, 454
DpnI	GATC	4 cut(s)	206, 222, 534, 557
DpnII	GATC	4 cut(s)	204, 220, 532, 555
DraI	TTTAAA	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
EciI	GGCGGA	1 cut(s)	568
Ecl136II	GAGCTC	1 cut(s)	574
Eco130I	CCWWGG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	576
Eco47I	GGWCC	3 cut(s)	401, 449, 458
Eco53kI	GAGCTC	1 cut(s)	574
Eco81I	CCTNAGG	1 cut(s)	454
EcoICRI	GAGCTC	1 cut(s)	574
EcoO109I	RGGNCCY	4 cut(s)	401, 449, 458, 493
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	2 cut(s)	527, 588
FaiI	YATR	7 cut(s)	24, 37, 285, 358, 360, 525, 586
FalI	AAGNNNNNCTT	2 cut(s)	480, 512
FaqI	GGGAC	2 cut(s)	142, 435
FatI	CATG	2 cut(s)	523, 584
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	1 cut(s)	195
GluI	GCNGC	1 cut(s)	195
GsuI	CTGGAG	2 cut(s)	318, 354
HaeIII	GGCC	1 cut(s)	494
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	55
Hin1II	CATG	2 cut(s)	527, 588
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	4 cut(s)	75, 130, 245, 331
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	244, 391
Hpy188I	TCNGA	3 cut(s)	74, 532, 565
Hpy188III	TCNNGA	6 cut(s)	134, 224, 345, 371, 456, 585
Hpy8I	GTNNAC	2 cut(s)	244, 391
Hpy99I	CGWCG	2 cut(s)	71, 74
HpyAV	CCTTC	3 cut(s)	208, 286, 506
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4V	TGCA	4 cut(s)	170, 407, 513, 539
HpyF3I	CTNAG	4 cut(s)	135, 262, 315, 454
Hsp92II	CATG	2 cut(s)	527, 588
KroI	GCCGGC	1 cut(s)	44
KroNI	GCCGGC	1 cut(s)	46
Kzo9I	GATC	4 cut(s)	204, 220, 532, 555
LmnI	GCTCC	2 cut(s)	191, 571
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	1 cut(s)	416
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	4 cut(s)	206, 222, 534, 557
MboI	GATC	4 cut(s)	204, 220, 532, 555
MboII	GAAGA	7 cut(s)	91, 159, 230, 293, 428, 491, 500
MflI	RGATCY	2 cut(s)	204, 532
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	2 cut(s)	228, 503
MluI	ACGCGT	1 cut(s)	64
MlyI	GAGTC	3 cut(s)	124, 239, 325
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	9 cut(s)	119, 166, 232, 264, 376, 463, 484, 543, 561
MroNI	GCCGGC	1 cut(s)	44
MseI	TTAA	4 cut(s)	51, 255, 384, 480
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	66
NaeI	GCCGGC	1 cut(s)	46
NdeII	GATC	4 cut(s)	204, 220, 532, 555
NgoMIV	GCCGGC	1 cut(s)	44
NlaIII	CATG	2 cut(s)	527, 588
NlaIV	GGNNCC	3 cut(s)	165, 402, 451
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	527
PagI	TCATGA	1 cut(s)	584
PciI	ACATGT	1 cut(s)	523
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	515
PdiI	GCCGGC	1 cut(s)	46
PfeI	GAWTC	1 cut(s)	75
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	3 cut(s)	124, 239, 325
PpsI	GAGTC	3 cut(s)	124, 239, 325
PpuMI	RGGWCCY	3 cut(s)	401, 449, 458
PscI	ACATGT	1 cut(s)	523
Psp124BI	GAGCTC	1 cut(s)	576
Psp5II	RGGWCCY	3 cut(s)	401, 449, 458
Psp6I	CCWGG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	165, 402, 451
PspPI	GGNCC	4 cut(s)	401, 449, 458, 493
PspPPI	RGGWCCY	3 cut(s)	401, 449, 458
PstI	CTGCAG	1 cut(s)	172
PsuI	RGATCY	2 cut(s)	204, 532
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SacI	GAGCTC	1 cut(s)	576
SaqAI	TTAA	4 cut(s)	51, 255, 384, 480
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	4 cut(s)	204, 220, 532, 555
Sau96I	GGNCC	4 cut(s)	401, 449, 458, 493
ScaI	AGTACT	1 cut(s)	115
SchI	GAGTC	3 cut(s)	124, 239, 325
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	576
SetI	ASST	9 cut(s)	169, 196, 243, 328, 340, 384, 451, 463, 576
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	401, 449, 458
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	2 cut(s)	228, 503
SsiI	CCGC	1 cut(s)	553
SstI	GAGCTC	1 cut(s)	576
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	228, 503
TatI	WGTACW	1 cut(s)	113
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	4 cut(s)	51, 255, 384, 480
Tru9I	TTAA	4 cut(s)	51, 255, 384, 480
TscAI	CASTG	1 cut(s)	583
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	4 cut(s)	67, 75, 293, 573
TspRI	CASTG	1 cut(s)	583
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	3 cut(s)	401, 449, 458
XceI	RCATGY	1 cut(s)	527
ZrmI	AGTACT	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.