Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012605

Physical Location & Seq

Genomic Coordinates Forward (+)

45128918 .. 45130648

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1189300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1629 bp

ATGCTCTCTCGCAATAGAACCAAACATGGAGGACCTCTTATCCATTCGTCACTTCTCTTCAAACTCGTCACACATTTTTCTCCATTTTCTTCCAAACCCAATTCAAATTTCGCAACCCAGAATCAAATCGCTACAATCCCAAAAAAATTCACCACAAGAAGATCAATTCCACTCCCTGCAACAGTCCCACAAGCTCCAGACGCAGTAAGTTCTTCAATTGTCAGCTCAGTATGTTCTTTGCTCTCTAAAGATACCAATGAAAGCACAAGTATTGATATTTTGTTGAAAAAATTAAAAAAGAAGTTGAGTTCAGAACTTGTGCTGCAAATTTTGATGAATTATAAGCAATTGGGTAGGAGCAAGGCATTGGATTTCTTCTCTTGGGCTGGATTTCAGATGGGTTTTCGGTTCGATGACTGTGTGGTTGAGTACATGGCTGATTTCTTAGGTAGGAGGAAGCTTTTTGATGATATGAAGTGTCTTCTGTTGACTGTGTCCTCCCACAAGGGTCGAGTTTCATGTCGAGCTGTGTCCATTTGCATTAGGTTTCTGGGTAGGCAGGGGAGGATTAGAGAAGCCCTTTGTACGTTTGAAGAAATGGAATCAAAATTTGGTTGTAAACCTGATAATCTTGTGTACAATAATGTGCTCTACGTGCTTTGTAAGAAGGAATCGTCTGGCCATTTAATTGACTTTGCGCTTGCAGTTTTTCGGAGAATTGAATCACCTGATACTTATTCGTACGTGAATGCTCTTATTGGAGAGTTGTGTTCATTCAGTGCGAAAGAAGGAGCTGTTGGGAAAGTAAGAGTGAGAAATTCTTGTAGAAACTTTACGATTTTAGTTCCAAAAGTGGGTGGAAACAGTGATGCTATACAGCCTGCAGTTGGAATTTTTTGGGCAGTGTATAAAGTGGGATTATTACCCAGTACATTTGCCATAATCCAGCTTCTTTCGGGGCTTTGTCAACTGGGAAAAGTGGAAGAGGCTGTTGAGATTTTGAAGGCTGTTGAGGGTAAGAAGCTGAGCTGTGTTGGAGAGGGCTACTGTATTGTGATGAAGGCTTTGTGTTCACACGGTCACGTTGAGATAACTAGCCATATGTTTGGGAGGATGCTATCCCAAGGCATGAAACCAAAGTTGGCTGTTTATAATTCAATTATATGCATGCTGTGTAAACTAGGGAATTTGGATGATGCTGGAAGTGTCTTTAAGATGATGAACAAGAATAGATGTCTTCCGGATAGTATGACATATTCTGCGTTAATCCATGCTTATGGTGGAGCTAAAAATTGGGAAGCTTCTTATGGCTTATTGATAGAAATGCTTGGGTTGGGCTACTCTCCACATTTTCATACTTATAGATTAGTGGACAAAATTTTGAGGGAAAACGGGCAGATGGATACGTGTCTTAAGTTGGAAAGGAAGTTGGAAACACAGATGTTGCAGAAGCTCTGTAAAGATGGCCAGTTAGAGGCTGCACATGAGAAGCTAAAATCAATGATTGGAAAGGGGTTTCACCCACCAGCATACGTGAGACATTCTTTTGAGAATGCGTTCCGGAGGTATGGAAAATTGAAAATAGCTCAGGAATTGCTGCGGACGACAAGTGAAACTGACAGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

543

Amino Acids

60.57

Weight (kDa)

9.4

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	180 - 222	8.9e-06	PPR repeat family
PPR_3	PF13812	372 - 428	2.3e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	376 - 407	6.7e-06	PPR repeat
PPR_2	PF13041	380 - 426	5.9e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11480
malus_domestica	MD00G1189300.v1.1
prunus_persica	Prupe.1G186400_v2.0.a1
pyrus_communis	pycom13g28900
rosa_chinensis	RchiOBHm_Chr4g0408211
rosa_laevigata	RLG00000008662
rosa_multiflora	Rmu_sc0007120.1_g000004 Rmu_ssc0000173.1_g000026
rosa_roxburghii	Rroxscaffold_5G00352720
rosa_rugosa	Rorug04G0084200 Rorug04G0084300 Rorug04G0084400 Rorug04G0084500 Rorug04G0084600
rosa_samantha	Rh4AG149200 Rh4BG145800 Rh4CG156200 Rh4DG142200
rosa_wichuraiana	Rw4G012180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	342, 1152
AccIII	TCCGGA	2 cut(s)	1240, 1560
AciI	CCGC	1 cut(s)	1600
AcoI	YGGCCR	2 cut(s)	679, 1465
AcsI	RAATTY	8 cut(s)	106, 146, 327, 608, 817, 891, 1186, 1377
AfaI	GTAC	5 cut(s)	431, 586, 638, 743, 931
AfiI	CCNNNNNNNGG	3 cut(s)	854, 887, 1474
AflII	CTTAAG	1 cut(s)	1412
AflIII	ACRYGT	1 cut(s)	1406
AgsI	TTSAA	9 cut(s)	61, 105, 216, 286, 593, 722, 1003, 1158, 1579
AjuI	GAANNNNNNNTTGG	8 cut(s)	92, 124, 594, 626, 780, 812, 1124, 1156
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	1 cut(s)	1531
Aor13HI	TCCGGA	2 cut(s)	1240, 1560
AoxI	GGCC	2 cut(s)	679, 1465
ApeKI	GCWGC	3 cut(s)	322, 1478, 1597
ApoI	RAATTY	8 cut(s)	106, 146, 327, 608, 817, 891, 1186, 1377
Asp700I	GAANNNNTTC	1 cut(s)	1556
AspLEI	GCGC	1 cut(s)	700
AspS9I	GGNCC	1 cut(s)	32
AsuHPI	GGTGA	3 cut(s)	142, 717, 1511
AvaII	GGWCC	1 cut(s)	32
BalI	TGGCCA	2 cut(s)	681, 1467
BbsI	GAAGAC	2 cut(s)	473, 1229
Bbv12I	GWGCWC	1 cut(s)	651
BbvI	GCAGC	3 cut(s)	309, 1465, 1584
BccI	CCATC	3 cut(s)	391, 1393, 1457
BciVI	GTATCC	1 cut(s)	1396
BcoDI	GTCTC	1 cut(s)	1531
BfaI	CTAG	2 cut(s)	1095, 1181
BfmI	CTRYAG	1 cut(s)	882
BfrI	CTTAAG	1 cut(s)	1412
BfuI	GTATCC	1 cut(s)	1396
BisI	GCNGC	3 cut(s)	323, 1479, 1598
BlpI	GCTNAGC	1 cut(s)	1025
BlsI	GCNGC	3 cut(s)	324, 1480, 1599
Bme18I	GGWCC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	32
BmrI	ACTGGG	2 cut(s)	921, 980
BmsI	GCATC	3 cut(s)	859, 1104, 1186
BmuI	ACTGGG	2 cut(s)	921, 980
BpiI	GAAGAC	2 cut(s)	473, 1229
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	1587
Bpu1102I	GCTNAGC	1 cut(s)	1025
BsaAI	YACGTR	4 cut(s)	655, 745, 1407, 1534
BsaJI	CCNNGG	1 cut(s)	1123
BsaWI	WCCGGW	2 cut(s)	1240, 1560
Bsc4I	CCNNNNNNNGG	3 cut(s)	854, 887, 1474
Bse1I	ACTGG	3 cut(s)	927, 975, 1468
BseAI	TCCGGA	2 cut(s)	1240, 1560
BseDI	CCNNGG	1 cut(s)	1123
BseGI	GGATG	2 cut(s)	1119, 1198
BseLI	CCNNNNNNNGG	3 cut(s)	854, 887, 1474
BseMII	CTCAG	3 cut(s)	240, 1016, 1601
BseNI	ACTGG	3 cut(s)	927, 975, 1468
BseXI	GCAGC	3 cut(s)	309, 1465, 1584
BsgI	GTGCAG	1 cut(s)	1464
BshFI	GGCC	2 cut(s)	681, 1467
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	2 cut(s)	1241, 1561
BsiWI	CGTACG	1 cut(s)	741
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	3 cut(s)	854, 887, 1474
BsmAI	GTCTC	1 cut(s)	1531
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	2 cut(s)	754, 1558
BsnI	GGCC	2 cut(s)	681, 1467
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp13I	TCCGGA	2 cut(s)	1240, 1560
Bsp1407I	TGTACA	1 cut(s)	636
Bsp143I	GATC	1 cut(s)	161
Bsp1720I	GCTNAGC	1 cut(s)	1025
BspACI	CCGC	1 cut(s)	1600
BspANI	GGCC	2 cut(s)	681, 1467
BspCNI	CTCAG	3 cut(s)	239, 1017, 1600
BspEI	TCCGGA	2 cut(s)	1240, 1560
BspMAI	CTGCAG	1 cut(s)	886
BspTI	CTTAAG	1 cut(s)	1412
BsrGI	TGTACA	1 cut(s)	636
BsrI	ACTGG	3 cut(s)	927, 975, 1468
BssECI	CCNNGG	1 cut(s)	1123
BssMI	GATC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	1123
Bst4CI	ACNGT	6 cut(s)	184, 419, 493, 866, 1049, 1079
Bst6I	CTCTTC	2 cut(s)	62, 978
BstAFI	CTTAAG	1 cut(s)	1412
BstAUI	TGTACA	1 cut(s)	636
BstBAI	YACGTR	4 cut(s)	655, 745, 1407, 1534
BstC8I	GCNNGC	3 cut(s)	702, 882, 1169
BstDEI	CTNAG	5 cut(s)	226, 445, 1025, 1587, 1626
BstF5I	GGATG	2 cut(s)	1119, 1198
BstHHI	GCGC	1 cut(s)	700
BstKTI	GATC	1 cut(s)	164
BstMAI	GTCTC	1 cut(s)	1531
BstMBI	GATC	1 cut(s)	161
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 655
BstNSI	RCATGY	1 cut(s)	1171
BstSFI	CTRYAG	1 cut(s)	882
BstV1I	GCAGC	3 cut(s)	309, 1465, 1584
BstV2I	GAAGAC	2 cut(s)	473, 1229
BstXI	CCANNNNNNTGG	2 cut(s)	1106, 1277
BsuI	GTATCC	1 cut(s)	1396
BsuRI	GGCC	2 cut(s)	681, 1467
BtsCI	GGATG	2 cut(s)	1119, 1198
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	3 cut(s)	784, 871, 909
Cac8I	GCNNGC	3 cut(s)	702, 882, 1169
CfoI	GCGC	1 cut(s)	700
Cfr13I	GGNCC	1 cut(s)	32
CseI	GACGC	1 cut(s)	209
Csp6I	GTAC	5 cut(s)	430, 585, 637, 742, 930
CviAII	CATG	7 cut(s)	26, 433, 519, 1129, 1168, 1271, 1484
CviQI	GTAC	5 cut(s)	430, 585, 637, 742, 930
DdeI	CTNAG	5 cut(s)	226, 445, 1025, 1587, 1626
DpnI	GATC	1 cut(s)	163
DpnII	GATC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	679, 1465
Eam1104I	CTCTTC	2 cut(s)	62, 978
EarI	CTCTTC	2 cut(s)	62, 978
Eco130I	CCWWGG	1 cut(s)	1123
Eco47I	GGWCC	1 cut(s)	32
EcoO109I	RGGNCCY	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	1123
EcoT22I	ATGCAT	1 cut(s)	1169
ErhI	CCWWGG	1 cut(s)	1123
FaeI	CATG	7 cut(s)	29, 436, 522, 1132, 1171, 1274, 1487
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	7 cut(s)	25, 432, 518, 1128, 1167, 1270, 1483
FauNDI	CATATG	1 cut(s)	1101
Fnu4HI	GCNGC	3 cut(s)	323, 1479, 1598
FokI	GGATG	2 cut(s)	1126, 1205
Fsp4HI	GCNGC	3 cut(s)	323, 1479, 1598
FspBI	CTAG	2 cut(s)	1095, 1181
GlaI	GCGC	1 cut(s)	699
GluI	GCNGC	3 cut(s)	323, 1479, 1598
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	2 cut(s)	681, 1467
HapII	CCGG	2 cut(s)	1241, 1561
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	700
Hin1II	CATG	7 cut(s)	29, 436, 522, 1132, 1171, 1274, 1487
Hin6I	GCGC	1 cut(s)	698
HinP1I	GCGC	1 cut(s)	698
HincII	GTYRAC	2 cut(s)	489, 968
HindII	GTYRAC	2 cut(s)	489, 968
HindIII	AAGCTT	2 cut(s)	458, 1299
HinfI	GANTC	4 cut(s)	121, 602, 671, 722
HpaII	CCGG	2 cut(s)	1241, 1561
HphI	GGTGA	3 cut(s)	142, 717, 1511
Hpy166II	GTNNAC	7 cut(s)	489, 620, 637, 968, 1073, 1178, 1372
Hpy188I	TCNGA	3 cut(s)	313, 396, 714
Hpy188III	TCNNGA	4 cut(s)	197, 1241, 1561, 1589
Hpy8I	GTNNAC	7 cut(s)	489, 620, 637, 968, 1073, 1178, 1372
HpyAV	CCTTC	4 cut(s)	661, 782, 997, 1054
HpyCH4III	ACNGT	6 cut(s)	184, 419, 493, 866, 1049, 1079
HpyCH4IV	ACGT	6 cut(s)	587, 654, 744, 1083, 1406, 1533
HpyCH4V	TGCA	8 cut(s)	179, 325, 540, 704, 884, 1167, 1447, 1481
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 655
HpyF3I	CTNAG	5 cut(s)	226, 445, 1025, 1587, 1626
HpySE526I	ACGT	6 cut(s)	587, 654, 744, 1083, 1406, 1533
Hsp92II	CATG	7 cut(s)	29, 436, 522, 1132, 1171, 1274, 1487
HspAI	GCGC	1 cut(s)	698
Kpn2I	TCCGGA	2 cut(s)	1240, 1560
Kzo9I	GATC	1 cut(s)	161
LmnI	GCTCC	4 cut(s)	199, 357, 791, 1283
Lsp1109I	GCAGC	3 cut(s)	309, 1465, 1584
LweI	GCATC	3 cut(s)	859, 1104, 1186
MaeI	CTAG	2 cut(s)	1095, 1181
MaeII	ACGT	6 cut(s)	587, 654, 744, 1083, 1406, 1533
MaeIII	GTNAC	3 cut(s)	48, 67, 1079
MalI	GATC	1 cut(s)	163
MboI	GATC	1 cut(s)	161
MboII	GAAGA	9 cut(s)	49, 81, 171, 204, 367, 473, 605, 995, 1229
MfeI	CAATTG	2 cut(s)	216, 347
MhlI	GDGCHC	1 cut(s)	651
MlsI	TGGCCA	2 cut(s)	681, 1467
MluNI	TGGCCA	2 cut(s)	681, 1467
MmeI	TCCRAC	4 cut(s)	868, 1015, 1398, 1410
Mox20I	TGGCCA	2 cut(s)	681, 1467
Mph1103I	ATGCAT	1 cut(s)	1169
MroI	TCCGGA	2 cut(s)	1240, 1560
MroXI	GAANNNNTTC	1 cut(s)	1556
MscI	TGGCCA	2 cut(s)	681, 1467
MseI	TTAA	5 cut(s)	293, 686, 1212, 1265, 1413
MslI	CAYNNNNRTG	1 cut(s)	1275
Msp20I	TGGCCA	2 cut(s)	681, 1467
MspCI	CTTAAG	1 cut(s)	1412
MspI	CCGG	2 cut(s)	1241, 1561
MunI	CAATTG	2 cut(s)	216, 347
Mva1269I	GAATGC	2 cut(s)	754, 1558
MwoI	GCNNNNNNNGC	2 cut(s)	200, 655
NdeI	CATATG	1 cut(s)	1101
NdeII	GATC	1 cut(s)	161
NlaIII	CATG	7 cut(s)	29, 436, 522, 1132, 1171, 1274, 1487
NmuCI	GTSAC	3 cut(s)	48, 67, 1079
NsiI	ATGCAT	1 cut(s)	1169
NspI	RCATGY	1 cut(s)	1171
PaeI	GCATGC	1 cut(s)	1171
PctI	GAATGC	2 cut(s)	754, 1558
PdmI	GAANNNNTTC	1 cut(s)	1556
PfeI	GAWTC	4 cut(s)	121, 602, 671, 722
Pfl23II	CGTACG	1 cut(s)	741
PflFI	GACNNNGTC	1 cut(s)	493
PkrI	GCNGC	3 cut(s)	324, 1480, 1599
Ppu21I	YACGTR	4 cut(s)	655, 745, 1407, 1534
PpuMI	RGGWCCY	1 cut(s)	32
PsiI	TTATAA	2 cut(s)	342, 1152
Psp5II	RGGWCCY	1 cut(s)	32
PspLI	CGTACG	1 cut(s)	741
PspPI	GGNCC	1 cut(s)	32
PspPPI	RGGWCCY	1 cut(s)	32
PstI	CTGCAG	1 cut(s)	886
PsyI	GACNNNGTC	1 cut(s)	493
RsaI	GTAC	5 cut(s)	431, 586, 638, 743, 931
RsaNI	GTAC	5 cut(s)	430, 585, 637, 742, 930
RseI	CAYNNNNRTG	1 cut(s)	1275
SaqAI	TTAA	5 cut(s)	293, 686, 1212, 1265, 1413
SatI	GCNGC	3 cut(s)	323, 1479, 1598
Sau3AI	GATC	1 cut(s)	161
Sau96I	GGNCC	1 cut(s)	32
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	3 cut(s)	859, 1104, 1186
SfcI	CTRYAG	1 cut(s)	882
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	1275
SmlI	CTYRAG	1 cut(s)	1412
SmoI	CTYRAG	1 cut(s)	1412
SphI	GCATGC	1 cut(s)	1171
SsiI	CCGC	1 cut(s)	1600
SspMI	CTAG	2 cut(s)	1095, 1181
StyI	CCWWGG	1 cut(s)	1123
TaaI	ACNGT	6 cut(s)	184, 419, 493, 866, 1049, 1079
TaiI	ACGT	6 cut(s)	590, 657, 747, 1086, 1409, 1536
TaqI	TCGA	3 cut(s)	411, 511, 523
TatI	WGTACW	3 cut(s)	429, 636, 929
TfiI	GAWTC	4 cut(s)	121, 602, 671, 722
Tru1I	TTAA	5 cut(s)	293, 686, 1212, 1265, 1413
Tru9I	TTAA	5 cut(s)	293, 686, 1212, 1265, 1413
TscAI	CASTG	3 cut(s)	784, 871, 909
TseFI	GTSAC	3 cut(s)	48, 67, 1079
TseI	GCWGC	3 cut(s)	322, 1478, 1597
Tsp45I	GTSAC	3 cut(s)	48, 67, 1079
TspDTI	ATGAA	9 cut(s)	273, 350, 488, 507, 762, 1073, 1145, 1235, 1343
TspRI	CASTG	3 cut(s)	784, 871, 909
Tth111I	GACNNNGTC	1 cut(s)	493
Vha464I	CTTAAG	1 cut(s)	1412
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	8 cut(s)	106, 146, 327, 608, 817, 891, 1186, 1377
XceI	RCATGY	1 cut(s)	1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1277
XmnI	GAANNNNTTC	1 cut(s)	1556
XspI	CTAG	2 cut(s)	1095, 1181
Zsp2I	ATGCAT	1 cut(s)	1169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.