Rorug04G0084500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012605
Physical Location & Seq
Reverse (-)
12923576 .. 12924398
823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0084500.1

Sequence Viewer

Length: 342 bp
ATGATGAGAGCTCGTTTGCTCTGGTTCGCTCTCGGCTTCTCCTCCACCGGAGCTGCAATTTCTCACCTGATTTGGAGAGATCTTATTGTCGACCGCACCGCTCTCTCCTCTGATGTGATGCGAAAGTTTGCTGCTCTTGAAAGCAGAATCGTGAACCTGGAGCATTCTTATCAGAATCCCAATCCGGCTGCTCAGGTATCCAGGGATAGACACGATGCTGATATAGATTTCACGTGTTGGTTTTCGTGTACAAAACTCAGTGATCTGCCTGCATCGATGCTGTTTTGTGTGTGTGTGTATGAGTCTATTGGCACAAATGGAGGTGAAACTTTGATGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

113

Amino Acids

12.66

Weight (kDa)

5.82

Isoelectric Point (pI)

19.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 101
AccI GTMKAC 1 cut(s) 90
AciI CCGC 2 cut(s) 94, 99
AcvI CACGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 250
AflIII ACRYGT 1 cut(s) 233
AgsI TTSAA 1 cut(s) 140
AjnI CCWGG 2 cut(s) 156, 200
AluBI AGCT 2 cut(s) 11, 53
AluI AGCT 2 cut(s) 11, 53
Alw21I GWGCWC 1 cut(s) 13
ApeKI GCWGC 3 cut(s) 53, 131, 188
AsuHPI GGTGA 2 cut(s) 56, 335
BanII GRGCYC 1 cut(s) 13
BbrPI CACGTG 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 40, 118, 175
BccI CCATC 1 cut(s) 328
BciT130I CCWGG 2 cut(s) 158, 202
BciVI GTATCC 1 cut(s) 208
BfuI GTATCC 1 cut(s) 208
BglII AGATCT 1 cut(s) 79
BisI GCNGC 3 cut(s) 54, 132, 189
BlsI GCNGC 3 cut(s) 55, 133, 190
Bme1390I CCNGG 2 cut(s) 158, 202
BmrFI CCNGG 2 cut(s) 158, 202
BmsI GCATC 4 cut(s) 108, 205, 267, 281
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 47
BseBI CCWGG 2 cut(s) 158, 202
BseCI ATCGAT 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 201
BseMII CTCAG 2 cut(s) 206, 271
BseRI GAGGAG 2 cut(s) 31, 97
BseXI GCAGC 3 cut(s) 40, 118, 175
Bsh1285I CGRYCG 1 cut(s) 94
BshVI ATCGAT 1 cut(s) 275
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 13
BsiSI CCGG 2 cut(s) 48, 185
BsmI GAATGC 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 13
Bsp1407I TGTACA 1 cut(s) 248
Bsp143I GATC 2 cut(s) 79, 262
BspACI CCGC 2 cut(s) 94, 99
BspCNI CTCAG 2 cut(s) 205, 270
BspDI ATCGAT 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 101
BsrGI TGTACA 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 79, 262
Bst2UI CCWGG 2 cut(s) 158, 202
BstAUI TGTACA 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 192, 257
BstKTI GATC 2 cut(s) 82, 265
BstMBI GATC 2 cut(s) 79, 262
BstMCI CGRYCG 1 cut(s) 94
BstNI CCWGG 2 cut(s) 158, 202
BstSCI CCNGG 2 cut(s) 156, 200
BstV1I GCAGC 3 cut(s) 40, 118, 175
BstX2I RGATCY 1 cut(s) 79
BstYI RGATCY 1 cut(s) 79
Bsu15I ATCGAT 1 cut(s) 275
BsuI GTATCC 1 cut(s) 208
BsuTUI ATCGAT 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 265
Cac8I GCNNGC 1 cut(s) 270
ClaI ATCGAT 1 cut(s) 275
Csp6I GTAC 1 cut(s) 249
CviJI RGCY 4 cut(s) 11, 36, 53, 188
CviKI_1 RGCY 4 cut(s) 11, 36, 53, 188
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 2 cut(s) 192, 257
DpnI GATC 2 cut(s) 81, 264
DpnII GATC 2 cut(s) 79, 262
Ecl136II GAGCTC 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 11
Eco72I CACGTG 1 cut(s) 234
EcoICRI GAGCTC 1 cut(s) 11
EcoRII CCWGG 2 cut(s) 156, 200
EcoT38I GRGCYC 1 cut(s) 13
FaiI YATR 2 cut(s) 224, 300
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 3 cut(s) 54, 132, 189
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 3 cut(s) 54, 132, 189
GluI GCNGC 3 cut(s) 54, 132, 189
GsuI CTGGAG 1 cut(s) 179
HapII CCGG 2 cut(s) 48, 185
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 3 cut(s) 147, 175, 302
HpaII CCGG 2 cut(s) 48, 185
HphI GGTGA 2 cut(s) 56, 335
Hpy166II GTNNAC 3 cut(s) 91, 154, 249
Hpy188I TCNGA 3 cut(s) 112, 174, 341
Hpy188III TCNNGA 2 cut(s) 137, 151
Hpy8I GTNNAC 3 cut(s) 91, 154, 249
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 56, 272
HpyF3I CTNAG 2 cut(s) 192, 257
HpySE526I ACGT 1 cut(s) 233
Kzo9I GATC 2 cut(s) 79, 262
LmnI GCTCC 2 cut(s) 50, 160
Lsp1109I GCAGC 3 cut(s) 40, 118, 175
LweI GCATC 4 cut(s) 108, 205, 267, 281
MaeII ACGT 1 cut(s) 233
MalI GATC 2 cut(s) 81, 264
MbiI CCGCTC 1 cut(s) 101
MboI GATC 2 cut(s) 79, 262
MflI RGATCY 1 cut(s) 79
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 57
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 3 cut(s) 52, 118, 314
MspI CCGG 2 cut(s) 48, 185
MspR9I CCNGG 2 cut(s) 158, 202
Mva1269I GAATGC 1 cut(s) 163
MvaI CCWGG 2 cut(s) 158, 202
NdeII GATC 2 cut(s) 79, 262
NmeAIII GCCGAG 1 cut(s) 12
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 147, 175
PkrI GCNGC 3 cut(s) 55, 133, 190
PleI GAGTC 1 cut(s) 310
PmaCI CACGTG 1 cut(s) 234
PmlI CACGTG 1 cut(s) 234
PpsI GAGTC 1 cut(s) 310
Ppu21I YACGTR 1 cut(s) 234
Psp124BI GAGCTC 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 156, 200
PspCI CACGTG 1 cut(s) 234
PspGI CCWGG 2 cut(s) 156, 200
PsuI RGATCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
SacI GAGCTC 1 cut(s) 13
SalI GTCGAC 1 cut(s) 89
SatI GCNGC 3 cut(s) 54, 132, 189
Sau3AI GATC 2 cut(s) 79, 262
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 158, 202
SduI GDGCHC 1 cut(s) 13
SetI ASST 7 cut(s) 13, 55, 69, 159, 198, 236, 325
SfaNI GCATC 4 cut(s) 108, 205, 267, 281
Sse9I AATT 1 cut(s) 57
SsiI CCGC 2 cut(s) 94, 99
SstI GAGCTC 1 cut(s) 13
StyD4I CCNGG 2 cut(s) 156, 200
TaiI ACGT 1 cut(s) 236
TaqI TCGA 2 cut(s) 90, 275
TasI AATT 1 cut(s) 57
TatI WGTACW 1 cut(s) 248
TfiI GAWTC 2 cut(s) 147, 175
TscAI CASTG 1 cut(s) 265
TseI GCWGC 3 cut(s) 53, 131, 188
TspRI CASTG 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.