Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012605

Physical Location & Seq

Genomic Coordinates Forward (+)

16944215 .. 16946338

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G186400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGCTCTCCCTGAGAATAACTAAAAATGGAGCTCTCACGCATTCTTCAATTCTCTTCAAAATTCTCATACCCTTTTCCCAATTTTCTCCGTTTTCTTCTAAATCCAATCCAAAATCCACAACCCAGAATCACATTACCACAATCCCAAGAAAATCCACTACAAGAAGACCCATTTCTCTCGCTGCACCAGTTCCACGTGTTCCAGACACAGTAAGTGCTTCTATTGTCAATTCAGTATGCTCTTTACTCTCTAAAGATACCCATGAAATCACAAGCATTGATAGTTTGTTGAAAAACTTCAAAAAAACGTTGAGCTCAGAACTTGTGCTTCAAATTTTGATGAATTATAAGCAGTTGGGTAGGAGTAAAACCTTGCAGTTCTTTTCTTGGGCTGGATTTCAAATGCGTTTTCAGTTTGATGACTGTGTGGTTGAGTACATGGCTGATTTCTTAGGTAGGAGGAAGCTCTTTGATGATATGAAGTGTCTTCTTTTGACTGTGTCCTCGCACAAGGGTCGAGTTTCCTGTCGGTCTGTGTCCATTTGTATTAGGTTTCTGGGTAGGCAAGGGAGGATTAAAGAAGCCCTTTGCGTGTTTGAAGAAATGGAATCAAAATTTGGGTGTAAACCTGATAATCTTGTGTACAATAATATGCTCTACGTGCTTTGTAAGAAGGAGTCATCTGGGCATTTAATTGATTTTGCACTGGCAGTTTTTCGGAGAATCGAATCCCCTGATACATATTCGTATAGTAACATGCTCGTTGGTTTATGTAAATTTGGTAGATTTGAGACTGCCGTTGAAGTTTTTGGTGATATGTGTAAGTCTGGCTTGGTTCCTACTCGGTCTGCAGTGAATGTTCTTATTGGAGATTTGTGTTTATTTAGTGCGAAAGAAGGAGCTGTTGAGAAAGTAAGAGTGAAAGATCCTTATAGAACTTTTACAATTTTAGTTCCTAAAGTTGGTGGAAACAGGGATGCTATACAGCCTGCAGTTGGAGTGTTTTGGGAAGTTTATAAATTGGGTTTATTACCTAGCGCATTTGTCATAATCCGGCTTATATCGGGCCTTTGTCAACTGGGAAAAGCGGAAGAGGCTGTCAAGGTCTTGAAGGCCGTTGAGGGTAAGAAGCTGAGTTGTGTCGAAGAGGGCTACTGCATTGTGATGAAGGCTTTGTGTGAGCACTGTTACGTTGATGAAGCTTGCAATTTGTTTGGGAGGATGCTCTCCCACTCCATGAAACCAAAGTTGGCTGTTTATAATCATGTTATCACTATGCTATGCAAATTAGGGAATGTGGATGATGCTGAGAGGGTCTTTAAGATAATGAACAAGAATAGATGTCTTCCAGATGGTATGACCTATTCTGCGCTGATCCATGCTTATTGCGAAGCTAGAAATTGGGAAACTGCTTATGGCTTATTGATAGAAATGCTTGGGTTGGGCTGCTCGCCACATTTTCACACTTATAGGTTAGTTGACAAAATTTTGAGGGAAAATGGGCAGATGGATTTGTGTCTTAAATTGGAAAGGAAGTTGGAAACCCTGACGTTGCAGAAGCTGTGTAAAGATGGCCAGTTAGAAGCTGCATATGAGAAACTAAAATCAATGATTGAAAAGGGATTTTACCCACCAGTTTACGTGAGGGATGCTTTTCAGAATGCGTTCCGAAGGTATGGAAAATCGAAAATAGCTCAGGAATTGCTAGAGAAGATAGATGAAATAGATAGAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

579

Amino Acids

65.34

Weight (kDa)

9.12

Isoelectric Point (pI)

30.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11480
malus_domestica	MD00G1189300.v1.1
prunus_persica	Prupe.1G186400_v2.0.a1
pyrus_communis	pycom13g28900
rosa_chinensis	RchiOBHm_Chr4g0408211
rosa_laevigata	RLG00000008662
rosa_multiflora	Rmu_sc0007120.1_g000004 Rmu_ssc0000173.1_g000026
rosa_roxburghii	Rroxscaffold_5G00352720
rosa_rugosa	Rorug04G0084200 Rorug04G0084300 Rorug04G0084400 Rorug04G0084500 Rorug04G0084600
rosa_samantha	Rh4AG149200 Rh4BG145800 Rh4CG156200 Rh4DG142200
rosa_wichuraiana	Rw4G012180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	348, 1017, 1260
AciI	CCGC	1 cut(s)	1088
AclI	AACGTT	1 cut(s)	308
AclWI	GGATC	2 cut(s)	920, 1369
AcoI	YGGCCR	1 cut(s)	1573
AcsI	RAATTY	5 cut(s)	60, 333, 614, 776, 1485
AcvI	CACGTG	1 cut(s)	197
AfaI	GTAC	2 cut(s)	437, 644
AfiI	CCNNNNNNNGG	2 cut(s)	962, 995
AflIII	ACRYGT	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	4 cut(s)	600, 632, 1232, 1264
Alw21I	GWGCWC	3 cut(s)	34, 317, 1185
Alw26I	GTCTC	1 cut(s)	785
AlwI	GGATC	2 cut(s)	920, 1369
AlwNI	CAGNNNCTG	1 cut(s)	1561
AoxI	GGCC	3 cut(s)	1066, 1113, 1573
ApeKI	GCWGC	3 cut(s)	182, 1446, 1586
ApoI	RAATTY	5 cut(s)	60, 333, 614, 776, 1485
Asp700I	GAANNNNTTC	2 cut(s)	296, 1664
AspLEI	GCGC	2 cut(s)	1040, 1372
AspS9I	GGNCC	1 cut(s)	1066
AsuHPI	GGTGA	1 cut(s)	824
BalI	TGGCCA	1 cut(s)	1575
BanII	GRGCYC	2 cut(s)	34, 317
BbrPI	CACGTG	1 cut(s)	197
BbsI	GAAGAC	3 cut(s)	172, 479, 1337
Bbv12I	GWGCWC	3 cut(s)	34, 317, 1185
BbvI	GCAGC	3 cut(s)	169, 1433, 1573
BccI	CCATC	3 cut(s)	1346, 1501, 1565
BceAI	ACGGC	2 cut(s)	782, 1100
BcgI	CGANNNNNNTGC	2 cut(s)	497, 531
BcoDI	GTCTC	1 cut(s)	785
BfaI	CTAG	3 cut(s)	1035, 1395, 1706
BfmI	CTRYAG	2 cut(s)	849, 990
BisI	GCNGC	3 cut(s)	183, 1447, 1587
BlsI	GCNGC	3 cut(s)	184, 1448, 1588
BmgT120I	GGNCC	1 cut(s)	1066
BmiI	GGNNCC	1 cut(s)	837
BmrI	ACTGGG	1 cut(s)	1088
BmsI	GCATC	4 cut(s)	967, 1212, 1294, 1639
BmuI	ACTGGG	1 cut(s)	1088
BpiI	GAAGAC	3 cut(s)	172, 479, 1337
Bpu10I	CCTNAGC	1 cut(s)	1695
BsaAI	YACGTR	3 cut(s)	197, 661, 1642
Bsc4I	CCNNNNNNNGG	2 cut(s)	962, 995
Bse1I	ACTGG	5 cut(s)	188, 711, 1083, 1576, 1634
BseGI	GGATG	4 cut(s)	982, 1227, 1306, 1654
BseLI	CCNNNNNNNGG	2 cut(s)	962, 995
BseMII	CTCAG	4 cut(s)	330, 1124, 1299, 1709
BseNI	ACTGG	5 cut(s)	188, 711, 1083, 1576, 1634
BseXI	GCAGC	3 cut(s)	169, 1433, 1573
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	1068, 1115, 1575
BsiHKAI	GWGCWC	3 cut(s)	34, 317, 1185
BsiSI	CCGG	1 cut(s)	1054
BslI	CCNNNNNNNGG	2 cut(s)	962, 995
BsmAI	GTCTC	1 cut(s)	785
BsmI	GAATGC	2 cut(s)	40, 1666
BsnI	GGCC	3 cut(s)	1068, 1115, 1575
Bsp1286I	GDGCHC	3 cut(s)	34, 317, 1185
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	2 cut(s)	925, 1374
BspACI	CCGC	1 cut(s)	1088
BspANI	GGCC	3 cut(s)	1068, 1115, 1575
BspCNI	CTCAG	4 cut(s)	329, 1125, 1300, 1708
BspLI	GGNNCC	1 cut(s)	837
BspMAI	CTGCAG	2 cut(s)	853, 994
BspPI	GGATC	2 cut(s)	920, 1369
BsrGI	TGTACA	1 cut(s)	642
BsrI	ACTGG	5 cut(s)	188, 711, 1083, 1576, 1634
BssMI	GATC	2 cut(s)	925, 1374
Bst4CI	ACNGT	4 cut(s)	211, 425, 499, 1187
Bst6I	CTCTTC	3 cut(s)	59, 1086, 1140
BstAUI	TGTACA	1 cut(s)	642
BstBAI	YACGTR	3 cut(s)	197, 661, 1642
BstC8I	GCNNGC	3 cut(s)	990, 1204, 1451
BstDEI	CTNAG	7 cut(s)	11, 316, 451, 1133, 1308, 1695, 1734
BstF5I	GGATG	4 cut(s)	982, 1227, 1306, 1654
BstHHI	GCGC	2 cut(s)	1040, 1372
BstKTI	GATC	2 cut(s)	928, 1377
BstMAI	GTCTC	1 cut(s)	785
BstMBI	GATC	2 cut(s)	925, 1374
BstMWI	GCNNNNNNNGC	2 cut(s)	661, 1094
BstNSI	RCATGY	1 cut(s)	760
BstSFI	CTRYAG	2 cut(s)	849, 990
BstV1I	GCAGC	3 cut(s)	169, 1433, 1573
BstV2I	GAAGAC	3 cut(s)	172, 479, 1337
BstX2I	RGATCY	1 cut(s)	925
BstYI	RGATCY	1 cut(s)	925
BsuRI	GGCC	3 cut(s)	1068, 1115, 1575
BtsCI	GGATG	4 cut(s)	982, 1227, 1306, 1654
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	3 cut(s)	704, 858, 1183
Cac8I	GCNNGC	3 cut(s)	990, 1204, 1451
CaiI	CAGNNNCTG	1 cut(s)	1561
CfoI	GCGC	2 cut(s)	1040, 1372
Cfr13I	GGNCC	1 cut(s)	1066
Csp6I	GTAC	2 cut(s)	436, 643
CviAII	CATG	6 cut(s)	263, 439, 757, 1237, 1265, 1379
CviQI	GTAC	2 cut(s)	436, 643
DdeI	CTNAG	7 cut(s)	11, 316, 451, 1133, 1308, 1695, 1734
DpnI	GATC	2 cut(s)	927, 1376
DpnII	GATC	2 cut(s)	925, 1374
EaeI	YGGCCR	1 cut(s)	1573
Eam1104I	CTCTTC	3 cut(s)	59, 1086, 1140
EarI	CTCTTC	3 cut(s)	59, 1086, 1140
Ecl136II	GAGCTC	2 cut(s)	32, 315
Eco24I	GRGCYC	2 cut(s)	34, 317
Eco53kI	GAGCTC	2 cut(s)	32, 315
Eco72I	CACGTG	1 cut(s)	197
EcoICRI	GAGCTC	2 cut(s)	32, 315
EcoT38I	GRGCYC	2 cut(s)	34, 317
FaeI	CATG	6 cut(s)	266, 442, 760, 1240, 1268, 1382
FalI	AAGNNNNNCTT	4 cut(s)	570, 602, 815, 847
FatI	CATG	6 cut(s)	262, 438, 756, 1236, 1264, 1378
FauNDI	CATATG	1 cut(s)	1591
Fnu4HI	GCNGC	3 cut(s)	183, 1447, 1587
FokI	GGATG	4 cut(s)	989, 1234, 1313, 1661
FriOI	GRGCYC	2 cut(s)	34, 317
Fsp4HI	GCNGC	3 cut(s)	183, 1447, 1587
FspBI	CTAG	3 cut(s)	1035, 1395, 1706
GlaI	GCGC	2 cut(s)	1039, 1371
GluI	GCNGC	3 cut(s)	183, 1447, 1587
HaeIII	GGCC	3 cut(s)	1068, 1115, 1575
HapII	CCGG	1 cut(s)	1054
HhaI	GCGC	2 cut(s)	1040, 1372
Hin1II	CATG	6 cut(s)	266, 442, 760, 1240, 1268, 1382
Hin6I	GCGC	2 cut(s)	1038, 1370
HinP1I	GCGC	2 cut(s)	1038, 1370
HincII	GTYRAC	2 cut(s)	1076, 1480
HindII	GTYRAC	2 cut(s)	1076, 1480
HindIII	AAGCTT	1 cut(s)	1200
HinfI	GANTC	5 cut(s)	127, 608, 677, 723, 728
HpaII	CCGG	1 cut(s)	1054
HphI	GGTGA	1 cut(s)	824
Hpy166II	GTNNAC	5 cut(s)	626, 643, 1076, 1480, 1639
Hpy188I	TCNGA	4 cut(s)	319, 720, 1659, 1670
Hpy188III	TCNNGA	4 cut(s)	203, 1108, 1349, 1697
Hpy8I	GTNNAC	5 cut(s)	626, 643, 1076, 1480, 1639
HpyAV	CCTTC	5 cut(s)	667, 890, 1105, 1162, 1665
HpyCH4III	ACNGT	4 cut(s)	211, 425, 499, 1187
HpyCH4IV	ACGT	6 cut(s)	196, 308, 660, 1191, 1550, 1641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	661, 1094
HpyF3I	CTNAG	7 cut(s)	11, 316, 451, 1133, 1308, 1695, 1734
HpySE526I	ACGT	6 cut(s)	196, 308, 660, 1191, 1550, 1641
Hsp92II	CATG	6 cut(s)	266, 442, 760, 1240, 1268, 1382
HspAI	GCGC	2 cut(s)	1038, 1370
Kzo9I	GATC	2 cut(s)	925, 1374
LmnI	GCTCC	2 cut(s)	29, 899
Lsp1109I	GCAGC	3 cut(s)	169, 1433, 1573
LweI	GCATC	4 cut(s)	967, 1212, 1294, 1639
MaeI	CTAG	3 cut(s)	1035, 1395, 1706
MaeII	ACGT	6 cut(s)	196, 308, 660, 1191, 1550, 1641
MaeIII	GTNAC	2 cut(s)	752, 1187
MalI	GATC	2 cut(s)	927, 1376
MboI	GATC	2 cut(s)	925, 1374
MflI	RGATCY	1 cut(s)	925
MhlI	GDGCHC	3 cut(s)	34, 317, 1185
MlsI	TGGCCA	1 cut(s)	1575
MluNI	TGGCCA	1 cut(s)	1575
MlyI	GAGTC	1 cut(s)	686
MmeI	TCCRAC	2 cut(s)	976, 1518
Mox20I	TGGCCA	1 cut(s)	1575
MroXI	GAANNNNTTC	2 cut(s)	296, 1664
MscI	TGGCCA	1 cut(s)	1575
MseI	TTAA	4 cut(s)	576, 692, 1320, 1521
MslI	CAYNNNNRTG	1 cut(s)	1163
Msp20I	TGGCCA	1 cut(s)	1575
MspI	CCGG	1 cut(s)	1054
Mva1269I	GAATGC	2 cut(s)	40, 1666
MwoI	GCNNNNNNNGC	2 cut(s)	661, 1094
NdeI	CATATG	1 cut(s)	1591
NdeII	GATC	2 cut(s)	925, 1374
NlaIII	CATG	6 cut(s)	266, 442, 760, 1240, 1268, 1382
NlaIV	GGNNCC	1 cut(s)	837
NspI	RCATGY	1 cut(s)	760
PctI	GAATGC	2 cut(s)	40, 1666
PdmI	GAANNNNTTC	2 cut(s)	296, 1664
PfeI	GAWTC	4 cut(s)	127, 608, 723, 728
PflFI	GACNNNGTC	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	184, 1448, 1588
PleI	GAGTC	1 cut(s)	685
PmaCI	CACGTG	1 cut(s)	197
PmlI	CACGTG	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	685
Ppu21I	YACGTR	3 cut(s)	197, 661, 1642
PsiI	TTATAA	3 cut(s)	348, 1017, 1260
Psp124BI	GAGCTC	2 cut(s)	34, 317
Psp1406I	AACGTT	1 cut(s)	308
PspCI	CACGTG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	837
PspPI	GGNCC	1 cut(s)	1066
PstI	CTGCAG	2 cut(s)	853, 994
PstNI	CAGNNNCTG	1 cut(s)	1561
PsuI	RGATCY	1 cut(s)	925
PsyI	GACNNNGTC	1 cut(s)	499
RsaI	GTAC	2 cut(s)	437, 644
RsaNI	GTAC	2 cut(s)	436, 643
RseI	CAYNNNNRTG	1 cut(s)	1163
SacI	GAGCTC	2 cut(s)	34, 317
SaqAI	TTAA	4 cut(s)	576, 692, 1320, 1521
SatI	GCNGC	3 cut(s)	183, 1447, 1587
Sau3AI	GATC	2 cut(s)	925, 1374
Sau96I	GGNCC	1 cut(s)	1066
SchI	GAGTC	1 cut(s)	686
SduI	GDGCHC	3 cut(s)	34, 317, 1185
SfaNI	GCATC	4 cut(s)	967, 1212, 1294, 1639
SfcI	CTRYAG	2 cut(s)	849, 990
SmiMI	CAYNNNNRTG	1 cut(s)	1163
SsiI	CCGC	1 cut(s)	1088
SspMI	CTAG	3 cut(s)	1035, 1395, 1706
SstI	GAGCTC	2 cut(s)	34, 317
TaaI	ACNGT	4 cut(s)	211, 425, 499, 1187
TaiI	ACGT	6 cut(s)	199, 311, 663, 1194, 1553, 1644
TaqI	TCGA	4 cut(s)	517, 726, 1143, 1685
TaqII	GACCGA	2 cut(s)	519, 834
TatI	WGTACW	2 cut(s)	435, 642
TfiI	GAWTC	4 cut(s)	127, 608, 723, 728
Tru1I	TTAA	4 cut(s)	576, 692, 1320, 1521
Tru9I	TTAA	4 cut(s)	576, 692, 1320, 1521
TscAI	CASTG	3 cut(s)	711, 858, 1190
TseI	GCWGC	3 cut(s)	182, 1446, 1586
TspDTI	ATGAA	8 cut(s)	279, 356, 494, 1181, 1212, 1253, 1343, 1734
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	3 cut(s)	711, 858, 1190
Tth111I	GACNNNGTC	1 cut(s)	499
XapI	RAATTY	5 cut(s)	60, 333, 614, 776, 1485
XceI	RCATGY	1 cut(s)	760
XmnI	GAANNNNTTC	2 cut(s)	296, 1664
XspI	CTAG	3 cut(s)	1035, 1395, 1706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.