Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000173.1

Orthogroup ID

OG0012605

Physical Location & Seq

Genomic Coordinates Forward (+)

128005 .. 129801

Gene Structure 1797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000173.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1797 bp

atgttgtctacatctaaacatggagctctcactctttcttcaattctcttcaaacatctcacaccccttacagcattttcaccattctcttcaaaacccaattcaaatttcacaaccccaaatcagattgccacaatcccaaaacaacccactgcaagaacaagagtcccacaggtttcagacccggtaagtgcttctgttgtcgattctgtatgttctttactttctagagaaaccgccagtgttgatagtttgttgagtggtttcaaacacgagttgagttcagaagtggtgcttcaagttttgatgaattataaggagctgggaaggagaaagacattggacttcttttcttgggctgggcttcaaatgcattttcagtttgaggactgtgtggttgagtacatggctgatttcttaggtaggaggaagctctttgatgacatcaagtgtcttttattgactgtgtccttgcacaagggtcgggtttcgtgtcgaacagtttcgacttgtattaggtttctgggtaggcaggggaggattaaagaggcactttgcgtgtttgaagaaatggaatctaaatttgggtgtaaacctgataatcttgtgtacaataatgtgctttatgtgctttgtaagaaggagtcatctgggcatttgattgattttgcgcttgcagtttttcggagaattgagtcccgtgatatgtattcgtatagtaatatgcttgttggtttgtgtaaatttggtagatttgagactgctgttgaagtttttggtgaaatgtgtgggactggtttggttcctactaggtctgcggtgaatgttcttattggagagttgtgtttattgagtgcgaaagaagcagctgttgctaaagtaagagtgaaaaatgttcgtaggccctttaagattttggttccaaatgtgcatgaaaagagcggtgctatccagcctgcacttggagtgttttgggaagtttataaactaggcttattacctagtacttttgtcataatccgacttctatcagagctttgtcaactgggaaaaatggaagaggctgttcgggtcttgaaggctgttgagggtaggaagcagagttgcgttgaggacggctactgcattgtgatgaagggattgtgtgaacactgctgtgttgaggaagctagtcatttgtttgggaggatgctctctcagggcatgaagccaaagttgactatttataattctattatttgcatgctatgcaaactagggaatttggatggtgctgaaagtgtctttaagatgatgaacaagaagagatgtcttccggatagttgtacttattctgcattggtccacgcttattgtaaagctggaaaatggaaagctgcttatgacttgatgatagaaatgctcggattgggctgctctccgccttttcacacttatagcttagtggataaacttttgagagaaaatgaacaaacagatttgtgttttaaattggaaaggaagttggaaacccagatcttgcagaagctatgcaaagatggtcaattagaggatgcatatgagaagctaaagtcaatgattgaaaaggggttttaccctccagtgtatgcaagagatgcttttaagaatgcatttcgaaagtatggaaaattaaatatagctcaggatttgttacagacgatagatgacatagacaacaatgaggagaaacaacttaccaatgaacctattgacagaagtattttccaccgtcaactgaagaagagtgagttcaaaaattctgatttcttactttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

598

Amino Acids

67.55

Weight (kDa)

8.82

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012605)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g11480
malus_domestica	MD00G1189300.v1.1
prunus_persica	Prupe.1G186400_v2.0.a1
pyrus_communis	pycom13g28900
rosa_chinensis	RchiOBHm_Chr4g0408211
rosa_laevigata	RLG00000008662
rosa_multiflora	Rmu_sc0007120.1_g000004 Rmu_ssc0000173.1_g000026
rosa_roxburghii	Rroxscaffold_5G00352720
rosa_rugosa	Rorug04G0084200 Rorug04G0084300 Rorug04G0084400 Rorug04G0084500 Rorug04G0084600
rosa_samantha	Rh4AG149200 Rh4BG145800 Rh4CG156200 Rh4DG142200
rosa_wichuraiana	Rw4G012180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	315, 984, 1227
AccBSI	CCGCTC	1 cut(s)	942
AccI	GTMKAC	1 cut(s)	8
AccIII	TCCGGA	1 cut(s)	1315
AciI	CCGC	4 cut(s)	237, 818, 942, 1421
AcsI	RAATTY	5 cut(s)	106, 581, 743, 1261, 1777
AcuI	CTGAAG	1 cut(s)	1778
AfaI	GTAC	4 cut(s)	404, 611, 1006, 1327
AfiI	CCNNNNNNNGG	1 cut(s)	962
AjuI	GAANNNNNNNTTGG	4 cut(s)	92, 124, 567, 599
AleI	CACNNNNGTG	1 cut(s)	1155
Alw21I	GWGCWC	1 cut(s)	28
Alw26I	GTCTC	1 cut(s)	752
Aor13HI	TCCGGA	1 cut(s)	1315
AoxI	GGCC	1 cut(s)	902
ApeKI	GCWGC	3 cut(s)	866, 1376, 1413
ApoI	RAATTY	5 cut(s)	106, 581, 743, 1261, 1777
Asp700I	GAANNNNTTC	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	673
AspS9I	GGNCC	2 cut(s)	903, 1342
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	72, 791, 832
AsuII	TTCGAA	1 cut(s)	1636
AvaII	GGWCC	1 cut(s)	1342
BanII	GRGCYC	1 cut(s)	28
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	1304
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	3 cut(s)	878, 1363, 1400
BccI	CCATC	2 cut(s)	1262, 1532
BceAI	ACGGC	1 cut(s)	1132
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	6 cut(s)	228, 810, 989, 1002, 1170, 1256
BglII	AGATCT	1 cut(s)	1515
BisI	GCNGC	3 cut(s)	867, 1377, 1414
BlsI	GCNGC	3 cut(s)	868, 1378, 1415
BmcAI	AGTACT	1 cut(s)	1006
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	1342
BmgT120I	GGNCC	2 cut(s)	903, 1342
BmiI	GGNNCC	2 cut(s)	804, 921
BmrFI	CCNGG	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	1055
BmsI	GCATC	3 cut(s)	1179, 1543, 1606
BmuI	ACTGGG	1 cut(s)	1055
BpiI	GAAGAC	1 cut(s)	1304
BpmI	CTGGAG	1 cut(s)	1584
Bpu10I	CCTNAGC	1 cut(s)	1662
Bpu14I	TTCGAA	1 cut(s)	1636
BpuMI	CCSGG	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	1315
Bsc4I	CCNNNNNNNGG	1 cut(s)	962
Bse1I	ACTGG	4 cut(s)	240, 799, 1050, 1601
BseAI	TCCGGA	1 cut(s)	1315
BseGI	GGATG	3 cut(s)	1194, 1273, 1558
BseLI	CCNNNNNNNGG	1 cut(s)	962
BseMII	CTCAG	2 cut(s)	1211, 1676
BseNI	ACTGG	4 cut(s)	240, 799, 1050, 1601
BseRI	GAGGAG	1 cut(s)	1718
BseXI	GCAGC	3 cut(s)	878, 1363, 1400
BseYI	CCCAGC	2 cut(s)	322, 359
BsgI	GTGCAG	1 cut(s)	942
BshFI	GGCC	1 cut(s)	904
BsiHKAI	GWGCWC	1 cut(s)	28
BsiSI	CCGG	2 cut(s)	185, 1316
BslFI	GGGAC	3 cut(s)	152, 682, 805
BslI	CCNNNNNNNGG	1 cut(s)	962
BsmAI	GTCTC	1 cut(s)	752
BsmFI	GGGAC	3 cut(s)	152, 682, 805
BsmI	GAATGC	1 cut(s)	1633
BsnI	GGCC	1 cut(s)	904
Bsp119I	TTCGAA	1 cut(s)	1636
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp13I	TCCGGA	1 cut(s)	1315
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	1 cut(s)	1515
BspACI	CCGC	4 cut(s)	237, 818, 942, 1421
BspANI	GGCC	1 cut(s)	904
BspCNI	CTCAG	2 cut(s)	1210, 1675
BspEI	TCCGGA	1 cut(s)	1315
BspLI	GGNNCC	2 cut(s)	804, 921
BspT104I	TTCGAA	1 cut(s)	1636
BsrBI	CCGCTC	1 cut(s)	942
BsrGI	TGTACA	1 cut(s)	609
BsrI	ACTGG	4 cut(s)	240, 799, 1050, 1601
BssMI	GATC	1 cut(s)	1515
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst4CI	ACNGT	4 cut(s)	392, 466, 502, 1751
Bst6I	CTCTTC	5 cut(s)	53, 94, 1053, 1298, 1757
BstAPI	GCANNNNNTGC	3 cut(s)	872, 1248, 1616
BstAUI	TGTACA	1 cut(s)	609
BstBI	TTCGAA	1 cut(s)	1636
BstC8I	GCNNGC	3 cut(s)	675, 957, 1244
BstDEI	CTNAG	4 cut(s)	418, 1197, 1441, 1662
BstF5I	GGATG	3 cut(s)	1194, 1273, 1558
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	1 cut(s)	1518
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	1 cut(s)	1515
BstMWI	GCNNNNNNNGC	6 cut(s)	370, 628, 863, 872, 1248, 1616
BstNSI	RCATGY	1 cut(s)	1246
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	878, 1363, 1400
BstV2I	GAAGAC	1 cut(s)	1304
BstX2I	RGATCY	1 cut(s)	1515
BstYI	RGATCY	1 cut(s)	1515
BsuRI	GGCC	1 cut(s)	904
BtsCI	GGATG	3 cut(s)	1194, 1273, 1558
BtsI	GCAGTG	2 cut(s)	150, 1150
BtsIMutI	CAGTG	4 cut(s)	150, 247, 1150, 1608
Cac8I	GCNNGC	3 cut(s)	675, 957, 1244
CfoI	GCGC	1 cut(s)	673
Cfr13I	GGNCC	2 cut(s)	903, 1342
Csp6I	GTAC	4 cut(s)	403, 610, 1005, 1326
CspCI	CAANNNNNGTGG	2 cut(s)	1334, 1369
CviAII	CATG	5 cut(s)	20, 406, 932, 1204, 1243
CviQI	GTAC	4 cut(s)	403, 610, 1005, 1326
DdeI	CTNAG	4 cut(s)	418, 1197, 1441, 1662
DpnI	GATC	1 cut(s)	1517
DpnII	GATC	1 cut(s)	1515
DraI	TTTAAA	1 cut(s)	1489
Eam1104I	CTCTTC	5 cut(s)	53, 94, 1053, 1298, 1757
EarI	CTCTTC	5 cut(s)	53, 94, 1053, 1298, 1757
EciI	GGCGGA	1 cut(s)	1410
Ecl136II	GAGCTC	1 cut(s)	26
Eco24I	GRGCYC	1 cut(s)	28
Eco47I	GGWCC	1 cut(s)	1342
Eco53kI	GAGCTC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	1778
EcoICRI	GAGCTC	1 cut(s)	26
EcoO109I	RGGNCCY	1 cut(s)	903
EcoT22I	ATGCAT	3 cut(s)	375, 1558, 1633
EcoT38I	GRGCYC	1 cut(s)	28
FaeI	CATG	5 cut(s)	23, 409, 935, 1207, 1246
FalI	AAGNNNNNCTT	6 cut(s)	279, 311, 537, 569, 1603, 1635
FaqI	GGGAC	3 cut(s)	152, 682, 805
FatI	CATG	5 cut(s)	19, 405, 931, 1203, 1242
FauNDI	CATATG	1 cut(s)	1558
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	3 cut(s)	867, 1377, 1414
FokI	GGATG	3 cut(s)	1201, 1280, 1565
FriOI	GRGCYC	1 cut(s)	28
Fsp4HI	GCNGC	3 cut(s)	867, 1377, 1414
FspBI	CTAG	6 cut(s)	228, 810, 989, 1002, 1170, 1256
GlaI	GCGC	1 cut(s)	672
GluI	GCNGC	3 cut(s)	867, 1377, 1414
GsaI	CCCAGC	2 cut(s)	326, 363
GsuI	CTGGAG	1 cut(s)	1584
HaeIII	GGCC	1 cut(s)	904
HapII	CCGG	2 cut(s)	185, 1316
HhaI	GCGC	1 cut(s)	673
Hin1II	CATG	5 cut(s)	23, 409, 935, 1207, 1246
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	3 cut(s)	1043, 1218, 1754
HindII	GTYRAC	3 cut(s)	1043, 1218, 1754
HinfI	GANTC	5 cut(s)	165, 206, 575, 644, 695
HpaII	CCGG	2 cut(s)	185, 1316
HphI	GGTGA	3 cut(s)	72, 791, 832
Hpy166II	GTNNAC	8 cut(s)	9, 593, 610, 1043, 1148, 1218, 1345, 1754
Hpy188I	TCNGA	8 cut(s)	126, 181, 286, 687, 1022, 1033, 1406, 1783
Hpy188III	TCNNGA	4 cut(s)	228, 1075, 1316, 1664
Hpy8I	GTNNAC	8 cut(s)	9, 593, 610, 1043, 1148, 1218, 1345, 1754
HpyAV	CCTTC	4 cut(s)	321, 634, 1072, 1129
HpyCH4III	ACNGT	4 cut(s)	392, 466, 502, 1751
HpyF10VI	GCNNNNNNNGC	6 cut(s)	370, 628, 863, 872, 1248, 1616
HpyF3I	CTNAG	4 cut(s)	418, 1197, 1441, 1662
Hsp92II	CATG	5 cut(s)	23, 409, 935, 1207, 1246
HspAI	GCGC	1 cut(s)	671
Kpn2I	TCCGGA	1 cut(s)	1315
Kzo9I	GATC	1 cut(s)	1515
LmnI	GCTCC	2 cut(s)	23, 319
Lsp1109I	GCAGC	3 cut(s)	878, 1363, 1400
LweI	GCATC	3 cut(s)	1179, 1543, 1606
MaeI	CTAG	6 cut(s)	228, 810, 989, 1002, 1170, 1256
MaeIII	GTNAC	1 cut(s)	1671
MalI	GATC	1 cut(s)	1517
MbiI	CCGCTC	1 cut(s)	942
MboI	GATC	1 cut(s)	1515
MboII	GAAGA	9 cut(s)	30, 40, 81, 578, 1070, 1304, 1315, 1771, 1774
MflI	RGATCY	1 cut(s)	1515
MhlI	GDGCHC	1 cut(s)	28
MlyI	GAGTC	3 cut(s)	174, 653, 704
MmeI	TCCRAC	2 cut(s)	1045, 1485
Mph1103I	ATGCAT	3 cut(s)	375, 1558, 1633
MroI	TCCGGA	1 cut(s)	1315
MroXI	GAANNNNTTC	1 cut(s)	502
MseI	TTAA	7 cut(s)	543, 909, 1287, 1488, 1623, 1652, 1795
MslI	CAYNNNNRTG	2 cut(s)	1130, 1155
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	2 cut(s)	185, 1316
MspR9I	CCNGG	1 cut(s)	185
Mva1269I	GAATGC	1 cut(s)	1633
MwoI	GCNNNNNNNGC	6 cut(s)	370, 628, 863, 872, 1248, 1616
NciI	CCSGG	1 cut(s)	185
NdeI	CATATG	1 cut(s)	1558
NdeII	GATC	1 cut(s)	1515
NlaIII	CATG	5 cut(s)	23, 409, 935, 1207, 1246
NlaIV	GGNNCC	2 cut(s)	804, 921
NsiI	ATGCAT	3 cut(s)	375, 1558, 1633
NspI	RCATGY	1 cut(s)	1246
NspV	TTCGAA	1 cut(s)	1636
OliI	CACNNNNGTG	1 cut(s)	1155
PaeI	GCATGC	1 cut(s)	1246
PctI	GAATGC	1 cut(s)	1633
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	206, 575
PflFI	GACNNNGTC	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	868, 1378, 1415
PleI	GAGTC	3 cut(s)	173, 652, 703
PpsI	GAGTC	3 cut(s)	173, 652, 703
PsiI	TTATAA	3 cut(s)	315, 984, 1227
Psp124BI	GAGCTC	1 cut(s)	28
PspFI	CCCAGC	2 cut(s)	322, 359
PspN4I	GGNNCC	2 cut(s)	804, 921
PspPI	GGNCC	2 cut(s)	903, 1342
PsuI	RGATCY	1 cut(s)	1515
PsyI	GACNNNGTC	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	869
RsaI	GTAC	4 cut(s)	404, 611, 1006, 1327
RsaNI	GTAC	4 cut(s)	403, 610, 1005, 1326
RseI	CAYNNNNRTG	2 cut(s)	1130, 1155
SacI	GAGCTC	1 cut(s)	28
SaqAI	TTAA	7 cut(s)	543, 909, 1287, 1488, 1623, 1652, 1795
SatI	GCNGC	3 cut(s)	867, 1377, 1414
Sau3AI	GATC	1 cut(s)	1515
Sau96I	GGNCC	2 cut(s)	903, 1342
ScaI	AGTACT	1 cut(s)	1006
SchI	GAGTC	3 cut(s)	174, 653, 704
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	28
SfaNI	GCATC	3 cut(s)	1179, 1543, 1606
SfuI	TTCGAA	1 cut(s)	1636
SinI	GGWCC	1 cut(s)	1342
SmiMI	CAYNNNNRTG	2 cut(s)	1130, 1155
SphI	GCATGC	1 cut(s)	1246
SsiI	CCGC	4 cut(s)	237, 818, 942, 1421
SspMI	CTAG	6 cut(s)	228, 810, 989, 1002, 1170, 1256
SstI	GAGCTC	1 cut(s)	28
StyD4I	CCNGG	1 cut(s)	183
TaaI	ACNGT	4 cut(s)	392, 466, 502, 1751
TaqI	TCGA	4 cut(s)	204, 496, 506, 1636
TatI	WGTACW	4 cut(s)	402, 609, 1004, 1325
TfiI	GAWTC	2 cut(s)	206, 575
Tru1I	TTAA	7 cut(s)	543, 909, 1287, 1488, 1623, 1652, 1795
Tru9I	TTAA	7 cut(s)	543, 909, 1287, 1488, 1623, 1652, 1795
TscAI	CASTG	4 cut(s)	157, 247, 1157, 1608
TseI	GCWGC	3 cut(s)	866, 1376, 1413
TspDTI	ATGAA	7 cut(s)	323, 948, 1148, 1220, 1310, 1482, 1737
TspRI	CASTG	4 cut(s)	157, 247, 1157, 1608
Tth111I	GACNNNGTC	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	1342
XapI	RAATTY	5 cut(s)	106, 581, 743, 1261, 1777
XbaI	TCTAGA	1 cut(s)	227
XceI	RCATGY	1 cut(s)	1246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	959
XmiI	GTMKAC	1 cut(s)	8
XmnI	GAANNNNTTC	1 cut(s)	502
XspI	CTAG	6 cut(s)	228, 810, 989, 1002, 1170, 1256
ZrmI	AGTACT	1 cut(s)	1006
Zsp2I	ATGCAT	3 cut(s)	375, 1558, 1633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.