Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011547

Physical Location & Seq

Genomic Coordinates Forward (+)

50146379 .. 50147137

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1205900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTTTACCTCTCCCTTCTAATCTTGGTTTCCCTAAGTTCAAGCTATGCTCAGCAGTTCTATGACCAATCTGATTGCGGTGTTGAGGCTAGCAATTCAGGCTCAAGATACATTTGCAATATGTTCCAAAATTCTTGCCAAACATTCTTGGTCTACAGAGCCAACCCGAATTTTCAAACTGTTTCGAATGTCTCAGACTTGTTTCGAATGGATTCTGATCAACTGCTTGGACTCAACAATCTCACATCTCCTTCTGAGGAACTGAAAGCAGGTAGGGAAGTTATTATTCCCATTAAATGTTCTTGCTCAGGTCAATATTTTCAGGCAAGTTTCAGCTACACGGTTTTGCAAAACACGTCATACTCCGAGGTTGCTTGTGGGGTTTTCGAAGGCTTGCTCAAGTCGTTTACACTCAAGGAGGAAAATATGTCCCAAGAAAACAAGCTTGTGGTTGGCACTGAGCTTCTTGTGCCTCTAAGATGTGCTTGTCCTGATAAGTTAGCTAGCAGTAGTGGAGTGAAGTACCTTGTGACCTACCCTCTCATAGAAGGCGACAGGCCAGTCATCTTAAGCCAGAAGTTTGGCATCTCTCCTGAAGATTTTTTATCAGTGAATCATTTAGCAAATGACGAAACTGTGTTTCCGAATACGACTGTTTTAGTTCCCTTGAGAGCAGCTCCGGAGTTAAACTTCAACATCCAATATTCTCCCCCTCCAGCTCCTACTCTTCTTCCCACAATTGCTGTGGAAAAAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase_Tyr

Protein Analysis

253

Amino Acids

27.79

Weight (kDa)

4.7

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM1_NFP_LYK	PF23446	45 - 102	5.6e-22	NFP/LYK LysM1 domain
LysM2_CERK1_LYK3_4_5	PF23472	106 - 160	4.5e-19	LYK3/4/5 LysM2 domain
LysM3_LYK4_5	PF23473	175 - 223	6e-09	LYK4/5 LysM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31710
malus_domestica	MD00G1205900.v1.1 MD03G1121700.v1.1 MD11G1140300.v1.1 MD11G1140400.v1.1
prunus_persica	Prupe.6G104800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0058401
rosa_laevigata	RLG00000035042 RLG00000035217
rosa_multiflora	Rmu_sc0000367.1_g000110
rosa_roxburghii	Rroxscaffold_1G00022160 Rroxscaffold_1G00024260
rosa_rugosa	Rorug05G0313600.1
rosa_samantha	Rh5AG381100 Rh5BG378700 Rh5BG392700 Rh5CG416800 Rh5DG407900
rosa_wichuraiana	Rw5G034550 Rw5G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
Acc36I	ACCTGC	1 cut(s)	260
AccI	GTMKAC	1 cut(s)	153
AccIII	TCCGGA	1 cut(s)	679
AciI	CCGC	1 cut(s)	78
AcsI	RAATTY	2 cut(s)	130, 169
AcuI	CTGAAG	1 cut(s)	615
AfaI	GTAC	1 cut(s)	524
AflII	CTTAAG	1 cut(s)	568
AflIII	ACRYGT	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	42, 176, 694
AjiI	CACGTC	1 cut(s)	357
AluBI	AGCT	7 cut(s)	45, 336, 445, 463, 503, 677, 719
AluI	AGCT	7 cut(s)	45, 336, 445, 463, 503, 677, 719
Alw26I	GTCTC	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	679
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	1 cut(s)	674
ApoI	RAATTY	2 cut(s)	130, 169
Asp700I	GAANNNNTTC	1 cut(s)	211
AsuII	TTCGAA	3 cut(s)	185, 205, 387
AsuNHI	GCTAGC	2 cut(s)	89, 503
BbvI	GCAGC	1 cut(s)	686
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	2 cut(s)	90, 504
BfmI	CTRYAG	1 cut(s)	154
BfrI	CTTAAG	1 cut(s)	568
BfuAI	ACCTGC	1 cut(s)	260
BisI	GCNGC	1 cut(s)	675
BlpI	GCTNAGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	676
BmgBI	CACGTC	1 cut(s)	357
BmsI	GCATC	1 cut(s)	594
BmtI	GCTAGC	2 cut(s)	93, 507
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
BpmI	CTGGAG	1 cut(s)	699
Bpu10I	CCTNAGC	1 cut(s)	307
Bpu1102I	GCTNAGC	1 cut(s)	51
Bpu14I	TTCGAA	3 cut(s)	185, 205, 387
BpuEI	CTTGAG	4 cut(s)	88, 383, 398, 688
BsaBI	GATNNNNATC	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	679
Bse1I	ACTGG	1 cut(s)	560
Bse8I	GATNNNNATC	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	679
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	1 cut(s)	696
BseJI	GATNNNNATC	1 cut(s)	216
BseMII	CTCAG	5 cut(s)	65, 207, 246, 321, 450
BseNI	ACTGG	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	686
BshFI	GGCC	1 cut(s)	559
BsiSI	CCGG	1 cut(s)	680
BslFI	GGGAC	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	559
Bsp119I	TTCGAA	3 cut(s)	185, 205, 387
Bsp13I	TCCGGA	1 cut(s)	679
Bsp143I	GATC	1 cut(s)	217
Bsp1720I	GCTNAGC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	5 cut(s)	64, 206, 247, 320, 451
BspEI	TCCGGA	1 cut(s)	679
BspMI	ACCTGC	1 cut(s)	260
BspOI	GCTAGC	2 cut(s)	93, 507
BspT104I	TTCGAA	3 cut(s)	185, 205, 387
BspTI	CTTAAG	1 cut(s)	568
BsrI	ACTGG	1 cut(s)	560
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	4 cut(s)	181, 343, 637, 655
Bst6I	CTCTTC	1 cut(s)	732
BstAFI	CTTAAG	1 cut(s)	568
BstBI	TTCGAA	3 cut(s)	185, 205, 387
BstC8I	GCNNGC	3 cut(s)	91, 395, 505
BstDEI	CTNAG	7 cut(s)	35, 51, 193, 255, 307, 459, 476
BstF5I	GGATG	1 cut(s)	696
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	99, 469
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	686
BstXI	CCANNNNNNTGG	1 cut(s)	581
BsuRI	GGCC	1 cut(s)	559
BtrI	CACGTC	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	696
BtsIMutI	CAGTG	2 cut(s)	456, 615
BveI	ACCTGC	1 cut(s)	260
Cac8I	GCNNGC	3 cut(s)	91, 395, 505
Csp6I	GTAC	1 cut(s)	523
CspCI	CAANNNNNGTGG	1 cut(s)	726
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	7 cut(s)	35, 51, 193, 255, 307, 459, 476
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	732
EarI	CTCTTC	1 cut(s)	732
Eco57I	CTGAAG	1 cut(s)	615
FaiI	YATR	6 cut(s)	48, 63, 122, 361, 428, 545
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FaqI	GGGAC	1 cut(s)	415
FbaI	TGATCA	1 cut(s)	217
FblI	GTMKAC	1 cut(s)	153
Fnu4HI	GCNGC	1 cut(s)	675
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	1 cut(s)	675
FspBI	CTAG	2 cut(s)	90, 504
GluI	GCNGC	1 cut(s)	675
GsuI	CTGGAG	1 cut(s)	699
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	1 cut(s)	680
HindIII	AAGCTT	1 cut(s)	443
HinfI	GANTC	3 cut(s)	212, 231, 613
HpaII	CCGG	1 cut(s)	680
Hpy166II	GTNNAC	3 cut(s)	7, 154, 408
Hpy188I	TCNGA	6 cut(s)	73, 196, 217, 256, 367, 645
Hpy188III	TCNNGA	4 cut(s)	105, 491, 593, 680
Hpy8I	GTNNAC	3 cut(s)	7, 154, 408
HpyAV	CCTTC	4 cut(s)	26, 261, 383, 542
HpyCH4III	ACNGT	4 cut(s)	181, 343, 637, 655
HpyCH4IV	ACGT	1 cut(s)	356
HpyCH4V	TGCA	2 cut(s)	117, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	99, 469
HpyF3I	CTNAG	7 cut(s)	35, 51, 193, 255, 307, 459, 476
HpySE526I	ACGT	1 cut(s)	356
Kpn2I	TCCGGA	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	2 cut(s)	682, 724
Lsp1109I	GCAGC	1 cut(s)	686
LweI	GCATC	1 cut(s)	594
MaeI	CTAG	2 cut(s)	90, 504
MaeII	ACGT	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	529
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	3 cut(s)	608, 719, 722
MfeI	CAATTG	1 cut(s)	738
MluCI	AATT	4 cut(s)	94, 130, 169, 738
MlyI	GAGTC	1 cut(s)	225
MnlI	CCTC	8 cut(s)	20, 79, 250, 361, 412, 483, 549, 723
MroI	TCCGGA	1 cut(s)	679
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	3 cut(s)	294, 569, 686
MspCI	CTTAAG	1 cut(s)	568
MspI	CCGG	1 cut(s)	680
MunI	CAATTG	1 cut(s)	738
MwoI	GCNNNNNNNGC	2 cut(s)	99, 469
NdeII	GATC	1 cut(s)	217
NheI	GCTAGC	2 cut(s)	89, 503
NmuCI	GTSAC	1 cut(s)	529
NspV	TTCGAA	3 cut(s)	185, 205, 387
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	212, 613
PkrI	GCNGC	1 cut(s)	676
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
SaqAI	TTAA	3 cut(s)	294, 569, 686
SatI	GCNGC	1 cut(s)	675
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	225
SfaNI	GCATC	1 cut(s)	594
SfcI	CTRYAG	1 cut(s)	154
SfuI	TTCGAA	3 cut(s)	185, 205, 387
SmlI	CTYRAG	5 cut(s)	103, 398, 413, 568, 667
SmoI	CTYRAG	5 cut(s)	103, 398, 413, 568, 667
Sse9I	AATT	4 cut(s)	94, 130, 169, 738
SsiI	CCGC	1 cut(s)	78
SspI	AATATT	2 cut(s)	317, 704
SspMI	CTAG	2 cut(s)	90, 504
TaaI	ACNGT	4 cut(s)	181, 343, 637, 655
TaiI	ACGT	1 cut(s)	359
TaqI	TCGA	3 cut(s)	185, 205, 387
TasI	AATT	4 cut(s)	94, 130, 169, 738
TfiI	GAWTC	2 cut(s)	212, 613
Tru1I	TTAA	3 cut(s)	294, 569, 686
Tru9I	TTAA	3 cut(s)	294, 569, 686
TscAI	CASTG	2 cut(s)	463, 615
TseFI	GTSAC	1 cut(s)	529
TseI	GCWGC	1 cut(s)	674
Tsp45I	GTSAC	1 cut(s)	529
TspRI	CASTG	2 cut(s)	463, 615
Vha464I	CTTAAG	1 cut(s)	568
XapI	RAATTY	2 cut(s)	130, 169
XcmI	CCANNNNNNNNNTGG	1 cut(s)	742
XmiI	GTMKAC	1 cut(s)	153
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	2 cut(s)	90, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.