Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011547

Physical Location & Seq

Genomic Coordinates Forward (+)

13042310 .. 13043023

Gene Structure 714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1140400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGATCAAGCAGATGAGATTTGAGGACACGAGCCATGTTATTGACGTGCATTCGAAGATCAACCACATCAACATCTTGAACTTAGAGGCGGTTTCTTACGGCGAAAATCACATGTCATGGTCTTATCTAGTTTTCGAGTTTCCGAGCAATGGCTGCTTGAGGGGCTGCTTGTCTAGTCCATCTAGTCCTATCAAGTGGCATTGGCGAACACAAATAGCTTTCGATATTGCAACTGGACTACACTACTTACACTGTTGTACTTTCCCTTCTTGTGCTCACCTAGGCATAAACACTAGAAACATTTTTGTGACAGCAAATTGGAGGGCAAAGCTTTCGAACATTGGAACCATATCGGCTGAGGGATTTTCGGAAGGAAATGACAAAGGATGGGTTGCACCAGAGTACCTTCTACACCGATCAGCTTCTGAGAAGGTGGATATTTTTGCATTTGGAGTTGTTTTGCTTGAGCTCATCTCAGCAAGAGAGGACATTGATGGGAAGTCGTTTAAAGAGTCCATCAAATTTTTGGGAGGGGGTGCTAGCGAAGGCGGTTTCCTCGAACAACTTAGGAGCTTCATGGATCCACAGTTGGAGGATTATCCTCTTGCAGAGGCCTTATGCTTAGCTGTTTTAGCGAAGGCCTGTGTGGAGGACGATCCTCTCCATCGGCCATCCATCGATGACATCATGAAAGTGCTCGCAAGAATGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase_Tyr

Protein Analysis

238

Amino Acids

26.48

Weight (kDa)

5.66

Isoelectric Point (pI)

49.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	12 - 231	3.2e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	14 - 231	7.9e-16	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31710
malus_domestica	MD00G1205900.v1.1 MD03G1121700.v1.1 MD11G1140300.v1.1 MD11G1140400.v1.1
prunus_persica	Prupe.6G104800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0058401
rosa_laevigata	RLG00000035042 RLG00000035217
rosa_multiflora	Rmu_sc0000367.1_g000110
rosa_roxburghii	Rroxscaffold_1G00022160 Rroxscaffold_1G00024260
rosa_rugosa	Rorug05G0313600.1
rosa_samantha	Rh5AG381100 Rh5BG378700 Rh5BG392700 Rh5CG416800 Rh5DG407900
rosa_wichuraiana	Rw5G034550 Rw5G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	89, 549
AclWI	GGATC	3 cut(s)	575, 588, 650
AcoI	YGGCCR	1 cut(s)	668
AcsI	RAATTY	1 cut(s)	521
AfaI	GTAC	2 cut(s)	259, 404
AfiI	CCNNNNNNNGG	1 cut(s)	149
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	79
AjiI	CACGTC	1 cut(s)	46
AluBI	AGCT	6 cut(s)	218, 331, 422, 469, 573, 626
AluI	AGCT	6 cut(s)	218, 331, 422, 469, 573, 626
Alw21I	GWGCWC	3 cut(s)	277, 471, 699
AlwI	GGATC	3 cut(s)	575, 588, 650
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	3 cut(s)	612, 639, 668
ApeKI	GCWGC	2 cut(s)	153, 165
ApoI	RAATTY	1 cut(s)	521
AspA2I	CCTAGG	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	269
AsuII	TTCGAA	2 cut(s)	53, 335
AsuNHI	GCTAGC	1 cut(s)	539
AvrII	CCTAGG	1 cut(s)	280
BaeI	ACNNNNGTAYC	2 cut(s)	386, 419
BamHI	GGATCC	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	471
BarI	GAAGNNNNNNTAC	2 cut(s)	250, 282
BauI	CACGAG	1 cut(s)	28
Bbv12I	GWGCWC	3 cut(s)	277, 471, 699
BbvCI	CCTCAGC	1 cut(s)	357
BbvI	GCAGC	2 cut(s)	140, 152
BccI	CCATC	7 cut(s)	187, 381, 488, 524, 672, 679, 683
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	315, 349
BclI	TGATCA	1 cut(s)	3
BfaI	CTAG	6 cut(s)	128, 174, 183, 281, 294, 540
BisI	GCNGC	2 cut(s)	154, 166
BlnI	CCTAGG	1 cut(s)	280
BlpI	GCTNAGC	1 cut(s)	622
BlsI	GCNGC	2 cut(s)	155, 167
BmgBI	CACGTC	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	346, 582
BmtI	GCTAGC	1 cut(s)	543
BplI	GAGNNNNNCTC	2 cut(s)	458, 490
Bpu10I	CCTNAGC	1 cut(s)	357
Bpu1102I	GCTNAGC	1 cut(s)	622
Bpu14I	TTCGAA	2 cut(s)	53, 335
BpuEI	CTTGAG	2 cut(s)	178, 485
Bsa29I	ATCGAT	1 cut(s)	678
BsaJI	CCNNGG	1 cut(s)	280
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	154
BseCI	ATCGAT	1 cut(s)	678
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	2 cut(s)	392, 671
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	348, 417, 489
BseNI	ACTGG	1 cut(s)	238
BseXI	GCAGC	2 cut(s)	140, 152
BshFI	GGCC	3 cut(s)	614, 641, 670
BshVI	ATCGAT	1 cut(s)	678
BsiHKAI	GWGCWC	3 cut(s)	277, 471, 699
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	614, 641, 670
Bsp119I	TTCGAA	2 cut(s)	53, 335
Bsp1286I	GDGCHC	3 cut(s)	277, 471, 699
Bsp143I	GATC	5 cut(s)	3, 57, 416, 580, 655
Bsp1720I	GCTNAGC	1 cut(s)	622
BspACI	CCGC	2 cut(s)	89, 549
BspANI	GGCC	3 cut(s)	614, 641, 670
BspCNI	CTCAG	3 cut(s)	349, 418, 488
BspDI	ATCGAT	1 cut(s)	678
BspHI	TCATGA	1 cut(s)	687
BspLI	GGNNCC	2 cut(s)	346, 582
BspOI	GCTAGC	1 cut(s)	543
BspPI	GGATC	3 cut(s)	575, 588, 650
BspT104I	TTCGAA	2 cut(s)	53, 335
BsrDI	GCAATG	1 cut(s)	154
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	280
BssMI	GATC	5 cut(s)	3, 57, 416, 580, 655
BssSI	CACGAG	1 cut(s)	28
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	28
Bst4CI	ACNGT	2 cut(s)	254, 588
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstBI	TTCGAA	2 cut(s)	53, 335
BstC8I	GCNNGC	2 cut(s)	541, 699
BstDEI	CTNAG	6 cut(s)	82, 357, 426, 475, 566, 622
BstF5I	GGATG	2 cut(s)	392, 671
BstKTI	GATC	5 cut(s)	6, 60, 419, 583, 658
BstMBI	GATC	5 cut(s)	3, 57, 416, 580, 655
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 162, 632
BstNSI	RCATGY	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	140, 152
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
Bsu15I	ATCGAT	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	614, 641, 670
BsuTUI	ATCGAT	1 cut(s)	678
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	392, 671
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	2 cut(s)	541, 699
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	687
ClaI	ATCGAT	1 cut(s)	678
Csp6I	GTAC	2 cut(s)	258, 403
CviAII	CATG	5 cut(s)	35, 112, 117, 577, 688
CviQI	GTAC	2 cut(s)	258, 403
DdeI	CTNAG	6 cut(s)	82, 357, 426, 475, 566, 622
DpnI	GATC	5 cut(s)	5, 59, 418, 582, 657
DpnII	GATC	5 cut(s)	3, 57, 416, 580, 655
DraI	TTTAAA	1 cut(s)	508
EaeI	YGGCCR	1 cut(s)	668
Ecl136II	GAGCTC	1 cut(s)	469
Eco130I	CCWWGG	1 cut(s)	280
Eco147I	AGGCCT	2 cut(s)	614, 641
Eco24I	GRGCYC	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	469
EcoICRI	GAGCTC	1 cut(s)	469
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	471
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	5 cut(s)	38, 115, 120, 580, 691
FaiI	YATR	9 cut(s)	36, 113, 118, 287, 350, 578, 619, 689, 712
FatI	CATG	5 cut(s)	34, 111, 116, 576, 687
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	154, 166
FokI	GGATG	2 cut(s)	399, 658
FriOI	GRGCYC	1 cut(s)	471
Fsp4HI	GCNGC	2 cut(s)	154, 166
FspBI	CTAG	6 cut(s)	128, 174, 183, 281, 294, 540
GluI	GCNGC	2 cut(s)	154, 166
HaeIII	GGCC	3 cut(s)	614, 641, 670
Hin1II	CATG	5 cut(s)	38, 115, 120, 580, 691
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	1 cut(s)	512
HphI	GGTGA	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	144, 370, 427
Hpy188III	TCNNGA	2 cut(s)	76, 688
HpyAV	CCTTC	6 cut(s)	276, 365, 416, 424, 539, 631
HpyCH4III	ACNGT	2 cut(s)	254, 588
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	5 cut(s)	49, 230, 395, 446, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 162, 632
HpyF3I	CTNAG	6 cut(s)	82, 357, 426, 475, 566, 622
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	5 cut(s)	38, 115, 120, 580, 691
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 57, 416, 580, 655
LmnI	GCTCC	1 cut(s)	570
LpnPI	CCDG	3 cut(s)	219, 411, 655
Lsp1109I	GCAGC	2 cut(s)	140, 152
MaeI	CTAG	6 cut(s)	128, 174, 183, 281, 294, 540
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	5 cut(s)	5, 59, 418, 582, 657
MboI	GATC	5 cut(s)	3, 57, 416, 580, 655
MboII	GAAGA	1 cut(s)	67
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	3 cut(s)	277, 471, 699
MluCI	AATT	2 cut(s)	316, 521
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	570
MseI	TTAA	1 cut(s)	507
MslI	CAYNNNNRTG	2 cut(s)	305, 692
Mva1269I	GAATGC	1 cut(s)	49
MwoI	GCNNNNNNNGC	3 cut(s)	153, 162, 632
NdeII	GATC	5 cut(s)	3, 57, 416, 580, 655
NheI	GCTAGC	1 cut(s)	539
NlaIII	CATG	5 cut(s)	38, 115, 120, 580, 691
NlaIV	GGNNCC	2 cut(s)	346, 582
NmuCI	GTSAC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	115
NspV	TTCGAA	2 cut(s)	53, 335
PagI	TCATGA	1 cut(s)	687
PceI	AGGCCT	2 cut(s)	614, 641
PciI	ACATGT	1 cut(s)	111
PctI	GAATGC	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	155, 167
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PscI	ACATGT	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	471
PspN4I	GGNNCC	2 cut(s)	346, 582
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	2 cut(s)	259, 404
RsaNI	GTAC	2 cut(s)	258, 403
RseI	CAYNNNNRTG	2 cut(s)	305, 692
SacI	GAGCTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	2 cut(s)	154, 166
Sau3AI	GATC	5 cut(s)	3, 57, 416, 580, 655
SchI	GAGTC	1 cut(s)	521
SduI	GDGCHC	3 cut(s)	277, 471, 699
SfuI	TTCGAA	2 cut(s)	53, 335
SmiMI	CAYNNNNRTG	2 cut(s)	305, 692
SmlI	CTYRAG	2 cut(s)	157, 464
SmoI	CTYRAG	2 cut(s)	157, 464
Sse9I	AATT	2 cut(s)	316, 521
SseBI	AGGCCT	2 cut(s)	614, 641
SsiI	CCGC	2 cut(s)	89, 549
SspMI	CTAG	6 cut(s)	128, 174, 183, 281, 294, 540
SstI	GAGCTC	1 cut(s)	471
StuI	AGGCCT	2 cut(s)	614, 641
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	254, 588
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	6 cut(s)	53, 135, 222, 335, 558, 678
TasI	AATT	2 cut(s)	316, 521
TatI	WGTACW	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	153, 165
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	2 cut(s)	565, 704
TspRI	CASTG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	521
XceI	RCATGY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XmaJI	CCTAGG	1 cut(s)	280
XspI	CTAG	6 cut(s)	128, 174, 183, 281, 294, 540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.